Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS21190 and ECOLIN_RS21195 are separated by 7 nucleotides ECOLIN_RS21195 and ECOLIN_RS21200 overlap by 4 nucleotides ECOLIN_RS21200 and ECOLIN_RS21205 overlap by 11 nucleotides ECOLIN_RS21205 and ECOLIN_RS21210 are separated by 59 nucleotides
ECOLIN_RS21190: ECOLIN_RS21190 - multidrug efflux MFS transporter EmrD, at 4,255,295 to 4,256,479
_RS21190
ECOLIN_RS21195: ECOLIN_RS21195 - radical SAM protein, at 4,256,487 to 4,256,984
_RS21195
ECOLIN_RS21200: ECOLIN_RS21200 - DUF202 domain-containing protein, at 4,256,981 to 4,257,343
_RS21200
ECOLIN_RS21205: ECOLIN_RS21205 - YidH family protein, at 4,257,333 to 4,257,680
_RS21205
ECOLIN_RS21210: ECOLIN_RS21210 - sulfatase-like hydrolase/transferase, at 4,257,740 to 4,259,233
_RS21210
Position (kb) 4257
4258 Strain fitness (log2 ratio) -1
0
1
2
3 at 4256.575 kb on + strand, within ECOLIN_RS21195 at 4256.575 kb on + strand, within ECOLIN_RS21195 at 4256.575 kb on + strand, within ECOLIN_RS21195 at 4256.745 kb on - strand, within ECOLIN_RS21195 at 4256.855 kb on + strand, within ECOLIN_RS21195 at 4256.999 kb on - strand at 4257.003 kb on - strand at 4257.017 kb on + strand at 4257.017 kb on + strand at 4257.017 kb on + strand at 4257.017 kb on + strand at 4257.018 kb on - strand, within ECOLIN_RS21200 at 4257.018 kb on - strand, within ECOLIN_RS21200 at 4257.018 kb on - strand, within ECOLIN_RS21200 at 4257.018 kb on - strand, within ECOLIN_RS21200 at 4257.019 kb on + strand, within ECOLIN_RS21200 at 4257.019 kb on + strand, within ECOLIN_RS21200 at 4257.051 kb on - strand, within ECOLIN_RS21200 at 4257.144 kb on + strand, within ECOLIN_RS21200 at 4257.144 kb on + strand, within ECOLIN_RS21200 at 4257.197 kb on + strand, within ECOLIN_RS21200 at 4257.198 kb on - strand, within ECOLIN_RS21200 at 4257.287 kb on - strand, within ECOLIN_RS21200 at 4257.344 kb on - strand at 4257.475 kb on + strand, within ECOLIN_RS21205 at 4257.475 kb on + strand, within ECOLIN_RS21205 at 4257.476 kb on - strand, within ECOLIN_RS21205 at 4257.693 kb on + strand at 4257.734 kb on - strand at 4257.819 kb on + strand at 4257.933 kb on + strand, within ECOLIN_RS21210 at 4257.933 kb on + strand, within ECOLIN_RS21210 at 4257.933 kb on + strand, within ECOLIN_RS21210 at 4257.997 kb on + strand, within ECOLIN_RS21210 at 4257.998 kb on - strand, within ECOLIN_RS21210 at 4258.011 kb on - strand, within ECOLIN_RS21210 at 4258.030 kb on - strand, within ECOLIN_RS21210 at 4258.067 kb on - strand, within ECOLIN_RS21210 at 4258.152 kb on - strand, within ECOLIN_RS21210 at 4258.213 kb on + strand, within ECOLIN_RS21210 at 4258.329 kb on + strand, within ECOLIN_RS21210 at 4258.329 kb on + strand, within ECOLIN_RS21210 at 4258.329 kb on + strand, within ECOLIN_RS21210 at 4258.330 kb on - strand, within ECOLIN_RS21210 at 4258.330 kb on - strand, within ECOLIN_RS21210 at 4258.330 kb on - strand, within ECOLIN_RS21210 at 4258.330 kb on - strand, within ECOLIN_RS21210 at 4258.330 kb on - strand, within ECOLIN_RS21210 at 4258.357 kb on + strand, within ECOLIN_RS21210 at 4258.391 kb on - strand, within ECOLIN_RS21210 at 4258.393 kb on - strand, within ECOLIN_RS21210 at 4258.393 kb on - strand, within ECOLIN_RS21210 at 4258.393 kb on - strand, within ECOLIN_RS21210 at 4258.405 kb on + strand, within ECOLIN_RS21210 at 4258.405 kb on + strand, within ECOLIN_RS21210 at 4258.614 kb on + strand, within ECOLIN_RS21210 at 4258.622 kb on + strand, within ECOLIN_RS21210
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,256,575 + ECOLIN_RS21195 0.18 +2.8 4,256,575 + ECOLIN_RS21195 0.18 -0.2 4,256,575 + ECOLIN_RS21195 0.18 -0.5 4,256,745 - ECOLIN_RS21195 0.52 +0.7 4,256,855 + ECOLIN_RS21195 0.74 +3.2 4,256,999 - -1.0 4,257,003 - +0.2 4,257,017 + +1.0 4,257,017 + +0.6 4,257,017 + +0.2 4,257,017 + +0.4 4,257,018 - ECOLIN_RS21200 0.10 -0.0 4,257,018 - ECOLIN_RS21200 0.10 +1.1 4,257,018 - ECOLIN_RS21200 0.10 -0.3 4,257,018 - ECOLIN_RS21200 0.10 +0.3 4,257,019 + ECOLIN_RS21200 0.10 +0.1 4,257,019 + ECOLIN_RS21200 0.10 +0.2 4,257,051 - ECOLIN_RS21200 0.19 -0.2 4,257,144 + ECOLIN_RS21200 0.45 +0.6 4,257,144 + ECOLIN_RS21200 0.45 +0.8 4,257,197 + ECOLIN_RS21200 0.60 -0.0 4,257,198 - ECOLIN_RS21200 0.60 +0.8 4,257,287 - ECOLIN_RS21200 0.84 +0.5 4,257,344 - -0.0 4,257,475 + ECOLIN_RS21205 0.41 +0.2 4,257,475 + ECOLIN_RS21205 0.41 +0.4 4,257,476 - ECOLIN_RS21205 0.41 -0.0 4,257,693 + +0.2 4,257,734 - +0.1 4,257,819 + -0.4 4,257,933 + ECOLIN_RS21210 0.13 -0.1 4,257,933 + ECOLIN_RS21210 0.13 -0.0 4,257,933 + ECOLIN_RS21210 0.13 -0.6 4,257,997 + ECOLIN_RS21210 0.17 +0.3 4,257,998 - ECOLIN_RS21210 0.17 -1.0 4,258,011 - ECOLIN_RS21210 0.18 +0.3 4,258,030 - ECOLIN_RS21210 0.19 +0.2 4,258,067 - ECOLIN_RS21210 0.22 -0.0 4,258,152 - ECOLIN_RS21210 0.28 +0.2 4,258,213 + ECOLIN_RS21210 0.32 +0.2 4,258,329 + ECOLIN_RS21210 0.39 +0.2 4,258,329 + ECOLIN_RS21210 0.39 -0.8 4,258,329 + ECOLIN_RS21210 0.39 +0.3 4,258,330 - ECOLIN_RS21210 0.39 -0.2 4,258,330 - ECOLIN_RS21210 0.39 +0.1 4,258,330 - ECOLIN_RS21210 0.39 +1.1 4,258,330 - ECOLIN_RS21210 0.39 -1.5 4,258,330 - ECOLIN_RS21210 0.39 +0.3 4,258,357 + ECOLIN_RS21210 0.41 +0.1 4,258,391 - ECOLIN_RS21210 0.44 -0.1 4,258,393 - ECOLIN_RS21210 0.44 -0.2 4,258,393 - ECOLIN_RS21210 0.44 +0.9 4,258,393 - ECOLIN_RS21210 0.44 +2.6 4,258,405 + ECOLIN_RS21210 0.45 -0.1 4,258,405 + ECOLIN_RS21210 0.45 +0.2 4,258,614 + ECOLIN_RS21210 0.59 -0.1 4,258,622 + ECOLIN_RS21210 0.59 -0.4
Or see this region's nucleotide sequence