Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12820

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS33440 and ECOLIN_RS12820 are separated by 894 nucleotidesECOLIN_RS12820 and ECOLIN_RS12825 are separated by 34 nucleotides ECOLIN_RS33440: ECOLIN_RS33440 - autotransporter outer membrane beta-barrel domain-containing protein, at 2,549,024 to 2,549,344 _RS33440 ECOLIN_RS12820: ECOLIN_RS12820 - nitrate/nitrite response regulator protein NarP, at 2,550,239 to 2,550,886 _RS12820 ECOLIN_RS12825: ECOLIN_RS12825 - cytochrome c-type biogenesis thiol:disulfide oxidoreductase CcmH, at 2,550,921 to 2,551,973 _RS12825 Position (kb) 2550 2551Strain fitness (log2 ratio) -1 0 1at 2549.670 kb on - strandat 2550.239 kb on - strandat 2550.969 kb on - strandat 2551.480 kb on + strand, within ECOLIN_RS12825at 2551.616 kb on - strand, within ECOLIN_RS12825

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,549,670 - -0.4
2,550,239 - -0.2
2,550,969 - +0.4
2,551,480 + ECOLIN_RS12825 0.53 -1.6
2,551,616 - ECOLIN_RS12825 0.66 +0.3

Or see this region's nucleotide sequence