Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12275

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS12265 and ECOLIN_RS12270 are separated by 81 nucleotidesECOLIN_RS12270 and ECOLIN_RS12275 are separated by 105 nucleotidesECOLIN_RS12275 and ECOLIN_RS12280 are separated by 47 nucleotides ECOLIN_RS12265: ECOLIN_RS12265 - lipid kinase YegS, at 2,433,193 to 2,434,092 _RS12265 ECOLIN_RS12270: ECOLIN_RS12270 - DeoR/GlpR family DNA-binding transcription regulator, at 2,434,174 to 2,434,947 _RS12270 ECOLIN_RS12275: ECOLIN_RS12275 - galactitol-1-phosphate 5-dehydrogenase, at 2,435,053 to 2,436,093 _RS12275 ECOLIN_RS12280: ECOLIN_RS12280 - PTS galactitol transporter subunit IIC, at 2,436,141 to 2,437,496 _RS12280 Position (kb) 2435 2436 2437Strain fitness (log2 ratio) -1 0 1at 2435.225 kb on + strand, within ECOLIN_RS12275at 2435.601 kb on + strand, within ECOLIN_RS12275at 2436.876 kb on - strand, within ECOLIN_RS12280at 2436.940 kb on + strand, within ECOLIN_RS12280

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,435,225 + ECOLIN_RS12275 0.17 -0.1
2,435,601 + ECOLIN_RS12275 0.53 +0.5
2,436,876 - ECOLIN_RS12280 0.54 +0.5
2,436,940 + ECOLIN_RS12280 0.59 +1.0

Or see this region's nucleotide sequence