Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08595

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08590 and ECOLIN_RS08595 are separated by 51 nucleotidesECOLIN_RS08595 and ECOLIN_RS08600 are separated by 401 nucleotides ECOLIN_RS08590: ECOLIN_RS08590 - anaerobic sulfatase maturase, at 1,693,362 to 1,694,519 _RS08590 ECOLIN_RS08595: ECOLIN_RS08595 - sulfatase, at 1,694,571 to 1,696,253 _RS08595 ECOLIN_RS08600: ECOLIN_RS08600 - acid stress response transcriptional regulator YdeO, at 1,696,655 to 1,697,416 _RS08600 Position (kb) 1694 1695 1696 1697Strain fitness (log2 ratio) -2 -1 0 1at 1695.164 kb on + strand, within ECOLIN_RS08595at 1695.410 kb on - strand, within ECOLIN_RS08595

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,695,164 + ECOLIN_RS08595 0.35 -2.4
1,695,410 - ECOLIN_RS08595 0.50 +0.4

Or see this region's nucleotide sequence