Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS04610

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS04600 and ECOLIN_RS04605 are separated by 217 nucleotidesECOLIN_RS04605 and ECOLIN_RS04610 are separated by 125 nucleotidesECOLIN_RS04610 and ECOLIN_RS04615 overlap by 4 nucleotidesECOLIN_RS04615 and ECOLIN_RS04620 overlap by 4 nucleotides ECOLIN_RS04600: ECOLIN_RS04600 - arginine ABC transporter ATP-binding protein ArtP, at 929,811 to 930,539 _RS04600 ECOLIN_RS04605: ECOLIN_RS04605 - lipoprotein, at 930,757 to 931,272 _RS04605 ECOLIN_RS04610: ECOLIN_RS04610 - heavy metal-binding domain-containing protein, at 931,398 to 931,721 _RS04610 ECOLIN_RS04615: ECOLIN_RS04615 - N-acetylmuramoyl-L-alanine amidase AmiD, at 931,718 to 932,548 _RS04615 ECOLIN_RS04620: ECOLIN_RS04620 - NAD(P)-dependent oxidoreductase, at 932,545 to 933,558 _RS04620 Position (kb) 931 932Strain fitness (log2 ratio) -1 0 1at 930.570 kb on - strandat 930.660 kb on - strandat 930.945 kb on + strand, within ECOLIN_RS04605at 931.127 kb on + strand, within ECOLIN_RS04605at 931.673 kb on + strand, within ECOLIN_RS04610at 931.932 kb on - strand, within ECOLIN_RS04615at 932.153 kb on - strand, within ECOLIN_RS04615at 932.324 kb on + strand, within ECOLIN_RS04615at 932.629 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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930,570 - -0.8
930,660 - +0.5
930,945 + ECOLIN_RS04605 0.36 +0.4
931,127 + ECOLIN_RS04605 0.72 +0.1
931,673 + ECOLIN_RS04610 0.85 -1.5
931,932 - ECOLIN_RS04615 0.26 -0.4
932,153 - ECOLIN_RS04615 0.52 -0.0
932,324 + ECOLIN_RS04615 0.73 -0.0
932,629 + -0.7

Or see this region's nucleotide sequence