Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02000

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS01995 and ECOLIN_RS02000 are separated by 525 nucleotidesECOLIN_RS02000 and ECOLIN_RS02005 are separated by 10 nucleotides ECOLIN_RS01995: ECOLIN_RS01995 - reactive chlorine-specific transcriptional regulator RclR, at 403,197 to 404,051 _RS01995 ECOLIN_RS02000: ECOLIN_RS02000 - (Fe-S)-binding protein, at 404,577 to 405,296 _RS02000 ECOLIN_RS02005: ECOLIN_RS02005 - LutB/LldF family L-lactate oxidation iron-sulfur protein, at 405,307 to 406,734 _RS02005 Position (kb) 404 405 406Strain fitness (log2 ratio) -2 -1 0 1at 404.506 kb on - strandat 404.844 kb on + strand, within ECOLIN_RS02000at 404.844 kb on + strand, within ECOLIN_RS02000at 404.897 kb on + strand, within ECOLIN_RS02000at 404.927 kb on + strand, within ECOLIN_RS02000at 404.947 kb on + strand, within ECOLIN_RS02000at 404.947 kb on + strand, within ECOLIN_RS02000at 404.947 kb on + strand, within ECOLIN_RS02000at 405.029 kb on + strand, within ECOLIN_RS02000at 405.029 kb on + strand, within ECOLIN_RS02000at 405.190 kb on + strand, within ECOLIN_RS02000at 405.303 kb on - strandat 405.908 kb on + strand, within ECOLIN_RS02005at 406.003 kb on - strand, within ECOLIN_RS02005at 406.011 kb on + strand, within ECOLIN_RS02005at 406.242 kb on + strand, within ECOLIN_RS02005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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404,506 - -0.4
404,844 + ECOLIN_RS02000 0.37 +0.6
404,844 + ECOLIN_RS02000 0.37 -0.2
404,897 + ECOLIN_RS02000 0.44 +0.4
404,927 + ECOLIN_RS02000 0.49 +0.1
404,947 + ECOLIN_RS02000 0.51 +0.0
404,947 + ECOLIN_RS02000 0.51 -0.1
404,947 + ECOLIN_RS02000 0.51 -0.6
405,029 + ECOLIN_RS02000 0.63 +0.6
405,029 + ECOLIN_RS02000 0.63 -1.5
405,190 + ECOLIN_RS02000 0.85 +0.0
405,303 - -0.2
405,908 + ECOLIN_RS02005 0.42 +0.6
406,003 - ECOLIN_RS02005 0.49 +0.6
406,011 + ECOLIN_RS02005 0.49 -2.3
406,242 + ECOLIN_RS02005 0.65 -1.2

Or see this region's nucleotide sequence