Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS01995

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS01990 and ECOLIN_RS01995 are separated by 226 nucleotidesECOLIN_RS01995 and ECOLIN_RS02000 are separated by 525 nucleotides ECOLIN_RS01990: ECOLIN_RS01990 - reactive chlorine resistance oxidoreductase RclA, at 401,645 to 402,970 _RS01990 ECOLIN_RS01995: ECOLIN_RS01995 - reactive chlorine-specific transcriptional regulator RclR, at 403,197 to 404,051 _RS01995 ECOLIN_RS02000: ECOLIN_RS02000 - (Fe-S)-binding protein, at 404,577 to 405,296 _RS02000 Position (kb) 403 404 405Strain fitness (log2 ratio) -1 0 1at 402.231 kb on - strand, within ECOLIN_RS01990at 402.950 kb on - strandat 402.964 kb on + strandat 403.122 kb on + strandat 403.556 kb on + strand, within ECOLIN_RS01995at 403.556 kb on + strand, within ECOLIN_RS01995at 404.506 kb on - strandat 404.844 kb on + strand, within ECOLIN_RS02000at 404.844 kb on + strand, within ECOLIN_RS02000at 404.897 kb on + strand, within ECOLIN_RS02000at 404.927 kb on + strand, within ECOLIN_RS02000at 404.947 kb on + strand, within ECOLIN_RS02000at 404.947 kb on + strand, within ECOLIN_RS02000at 404.947 kb on + strand, within ECOLIN_RS02000at 405.029 kb on + strand, within ECOLIN_RS02000at 405.029 kb on + strand, within ECOLIN_RS02000

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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402,231 - ECOLIN_RS01990 0.44 -0.4
402,950 - -0.5
402,964 + +0.2
403,122 + +0.5
403,556 + ECOLIN_RS01995 0.42 -0.5
403,556 + ECOLIN_RS01995 0.42 -0.6
404,506 - -0.4
404,844 + ECOLIN_RS02000 0.37 +0.6
404,844 + ECOLIN_RS02000 0.37 -0.2
404,897 + ECOLIN_RS02000 0.44 +0.4
404,927 + ECOLIN_RS02000 0.49 +0.1
404,947 + ECOLIN_RS02000 0.51 +0.0
404,947 + ECOLIN_RS02000 0.51 -0.1
404,947 + ECOLIN_RS02000 0.51 -0.6
405,029 + ECOLIN_RS02000 0.63 +0.6
405,029 + ECOLIN_RS02000 0.63 -1.5

Or see this region's nucleotide sequence