Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS00180 and ECOLIN_RS00190 are separated by 260 nucleotides ECOLIN_RS00190 and ECOLIN_RS00195 are separated by 118 nucleotides ECOLIN_RS00195 and ECOLIN_RS00200 are separated by 5 nucleotides ECOLIN_RS00200 and ECOLIN_RS00205 are separated by 108 nucleotides
ECOLIN_RS00180: ECOLIN_RS00180 - carbamoyl-phosphate synthase large subunit, at 32,775 to 35,996
_RS00180
ECOLIN_RS00190: ECOLIN_RS00190 - carnitine metabolism transcriptional regulator CaiF, at 36,257 to 36,652
_RS00190
ECOLIN_RS00195: ECOLIN_RS00195 - carnitine operon protein CaiE, at 36,771 to 37,361
_RS00195
ECOLIN_RS00200: ECOLIN_RS00200 - crotonobetainyl-CoA hydratase, at 37,367 to 38,152
_RS00200
ECOLIN_RS00205: ECOLIN_RS00205 - crotonobetaine/carnitine-CoA ligase, at 38,261 to 39,814
_RS00205
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 35.789 kb on + strand at 35.789 kb on + strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.809 kb on - strand at 35.882 kb on + strand at 35.994 kb on + strand at 35.995 kb on - strand at 36.048 kb on + strand at 36.166 kb on + strand at 36.385 kb on + strand, within ECOLIN_RS00190 at 36.395 kb on + strand, within ECOLIN_RS00190 at 36.448 kb on + strand, within ECOLIN_RS00190 at 36.486 kb on + strand, within ECOLIN_RS00190 at 36.640 kb on + strand at 36.718 kb on - strand at 36.773 kb on - strand at 36.853 kb on - strand, within ECOLIN_RS00195 at 37.173 kb on - strand, within ECOLIN_RS00195 at 37.255 kb on + strand, within ECOLIN_RS00195 at 37.256 kb on - strand, within ECOLIN_RS00195 at 37.355 kb on - strand at 37.355 kb on - strand at 37.355 kb on - strand at 37.480 kb on - strand, within ECOLIN_RS00200 at 37.522 kb on - strand, within ECOLIN_RS00200 at 37.522 kb on - strand, within ECOLIN_RS00200 at 38.013 kb on - strand, within ECOLIN_RS00200 at 38.013 kb on - strand, within ECOLIN_RS00200 at 38.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 35,789 + -1.9 35,789 + -2.9 35,808 + +0.7 35,808 + -2.0 35,809 - -0.1 35,882 + -0.6 35,994 + -0.6 35,995 - +1.1 36,048 + -1.9 36,166 + +0.5 36,385 + ECOLIN_RS00190 0.32 -0.2 36,395 + ECOLIN_RS00190 0.35 +0.6 36,448 + ECOLIN_RS00190 0.48 -0.4 36,486 + ECOLIN_RS00190 0.58 +0.4 36,640 + -0.2 36,718 - +0.0 36,773 - +0.2 36,853 - ECOLIN_RS00195 0.14 +0.0 37,173 - ECOLIN_RS00195 0.68 -0.4 37,255 + ECOLIN_RS00195 0.82 +0.8 37,256 - ECOLIN_RS00195 0.82 +0.2 37,355 - -1.1 37,355 - -0.3 37,355 - +1.1 37,480 - ECOLIN_RS00200 0.14 -0.9 37,522 - ECOLIN_RS00200 0.20 -1.7 37,522 - ECOLIN_RS00200 0.20 -0.4 38,013 - ECOLIN_RS00200 0.82 +0.1 38,013 - ECOLIN_RS00200 0.82 -0.8 38,078 - +0.1
Or see this region's nucleotide sequence