Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS15875

Experiment: Anaerobic; copper (II) chloride 1 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic; copper (II) chloride 1 uM
3,355,972	-		ABCV34_RS15865	0.57	-1.7
3,356,277	+		ABCV34_RS15865	0.75	-2.1
3,356,386	+		ABCV34_RS15865	0.81	+0.3
3,356,387	-		ABCV34_RS15865	0.81	-3.3
3,356,387	-		ABCV34_RS15865	0.81	-1.1
3,356,387	-		ABCV34_RS15865	0.81	-3.6
3,356,387	-		ABCV34_RS15865	0.81	-1.1
3,356,415	+		ABCV34_RS15865	0.83	-3.0
3,356,415	+		ABCV34_RS15865	0.83	-2.4
3,356,415	+		ABCV34_RS15865	0.83	-1.1
3,356,416	-		ABCV34_RS15865	0.83	-2.1
3,356,416	-		ABCV34_RS15865	0.83	-1.7
3,356,416	-		ABCV34_RS15865	0.83	-1.7
3,356,416	-		ABCV34_RS15865	0.83	-4.2
3,356,416	-		ABCV34_RS15865	0.83	-0.9
3,356,416	-		ABCV34_RS15865	0.83	-2.7
3,356,493	+		ABCV34_RS15865	0.87	-1.7
3,356,493	+		ABCV34_RS15865	0.87	-0.1
3,356,657	+				-1.1
3,356,657	+				-0.1
3,356,658	-				-2.1
3,356,658	-				-2.3
3,356,748	+		ABCV34_RS15870	0.16	-1.3
3,356,749	-		ABCV34_RS15870	0.17	-2.9
3,356,749	-		ABCV34_RS15870	0.17	-1.5
3,356,762	+		ABCV34_RS15870	0.22	-1.4
3,356,762	+		ABCV34_RS15870	0.22	-0.7
3,356,762	+		ABCV34_RS15870	0.22	-2.0
3,356,763	-		ABCV34_RS15870	0.22	-1.7
3,356,795	+		ABCV34_RS15870	0.35	-2.1
3,356,795	+		ABCV34_RS15870	0.35	-2.4
3,356,795	+		ABCV34_RS15870	0.35	-0.7
3,356,795	+		ABCV34_RS15870	0.35	-1.7
3,356,795	+		ABCV34_RS15870	0.35	-1.1
3,356,796	-		ABCV34_RS15870	0.35	-0.1
3,356,796	-		ABCV34_RS15870	0.35	-1.9
3,356,846	-		ABCV34_RS15870	0.55	-0.1
3,356,988	+				-3.1
3,357,010	+				-3.7
3,357,011	-				-1.1
3,357,011	-				-1.7
3,357,038	+				-1.4
3,357,038	+				-2.5
3,357,038	+				-2.1
3,357,039	-				-0.8
3,357,039	-				-1.8
3,357,039	-				-1.7
3,357,039	-				-0.1
3,357,039	-				-2.4
3,357,039	-				-1.7
3,357,139	+		ABCV34_RS15875	0.20	-0.4
3,357,140	-		ABCV34_RS15875	0.20	-1.1
3,357,140	-		ABCV34_RS15875	0.20	-2.1
3,357,140	-		ABCV34_RS15875	0.20	-2.5
3,357,140	-		ABCV34_RS15875	0.20	-3.4
3,357,140	-		ABCV34_RS15875	0.20	-3.2
3,357,140	-		ABCV34_RS15875	0.20	+1.5
3,357,144	-		ABCV34_RS15875	0.21	-2.8
3,357,144	-		ABCV34_RS15875	0.21	-0.9
3,357,176	-		ABCV34_RS15875	0.24	-1.7
3,357,176	-		ABCV34_RS15875	0.24	-1.1
3,357,194	+		ABCV34_RS15875	0.26	-1.7
3,357,265	-		ABCV34_RS15875	0.34	-4.4
3,357,265	-		ABCV34_RS15875	0.34	-3.3
3,357,349	-		ABCV34_RS15875	0.43	-3.4
3,357,365	+		ABCV34_RS15875	0.45	-1.7
3,357,368	-		ABCV34_RS15875	0.45	-4.1
3,357,368	-		ABCV34_RS15875	0.45	-2.7
3,357,540	+		ABCV34_RS15875	0.64	-2.9
3,357,540	+		ABCV34_RS15875	0.64	-1.1
3,357,541	-		ABCV34_RS15875	0.64	-1.7
3,357,541	-		ABCV34_RS15875	0.64	-2.3
3,357,541	-		ABCV34_RS15875	0.64	-0.5
3,357,670	+		ABCV34_RS15875	0.78	-2.6
3,357,670	+		ABCV34_RS15875	0.78	-1.7
3,357,670	+		ABCV34_RS15875	0.78	-1.1
3,357,670	+		ABCV34_RS15875	0.78	-2.7
3,357,670	+		ABCV34_RS15875	0.78	-1.7
3,357,671	-		ABCV34_RS15875	0.78	-0.5
3,357,671	-		ABCV34_RS15875	0.78	-1.4
3,357,671	-		ABCV34_RS15875	0.78	-1.5
3,357,671	-		ABCV34_RS15875	0.78	-2.2
3,357,671	-		ABCV34_RS15875	0.78	-1.9
3,357,671	-		ABCV34_RS15875	0.78	-2.7
3,357,704	-		ABCV34_RS15875	0.81	-3.1
3,357,864	+				-2.7
3,357,864	+				-1.8
3,357,864	+				+0.5
3,357,864	+				-0.8
3,357,864	+				-0.8
3,357,865	-				-0.7
3,357,865	-				-1.8
3,357,865	-				-2.2
3,357,865	-				-0.7
3,357,865	-				-2.1
3,357,898	+				-4.6
3,357,898	+				-2.9
3,357,898	+				-2.3
3,357,898	+				-2.3
3,357,899	-				-0.6
3,358,069	-		ABCV34_RS15880	0.78	-2.1
3,358,069	-		ABCV34_RS15880	0.78	-2.7
3,358,069	-		ABCV34_RS15880	0.78	-1.0
3,358,115	+				-1.8
3,358,116	-				-2.7
3,358,116	-				-0.6
3,358,116	-				-1.2
3,358,116	-				-2.3
3,358,134	-				-0.6
3,358,161	+				-2.6
3,358,368	+				-2.1
3,358,368	+				-1.6
3,358,369	-				-2.9
3,358,369	-				-0.8
3,358,369	-				-1.6
3,358,369	-				-1.1
3,358,493	-				-1.6
3,358,570	+		ABCV34_RS15885	0.12	-2.1
3,358,685	+		ABCV34_RS15885	0.35	-1.5
3,358,756	+		ABCV34_RS15885	0.49	-2.0
3,358,756	+		ABCV34_RS15885	0.49	-1.9
3,358,756	+		ABCV34_RS15885	0.49	-1.4
3,358,757	-		ABCV34_RS15885	0.49	-1.6
3,358,798	+		ABCV34_RS15885	0.57	-1.5
3,358,799	-		ABCV34_RS15885	0.57	-2.9
3,358,860	+		ABCV34_RS15885	0.69	-1.0