Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS15195

Experiment: Anaerobic; copper (II) chloride 1 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic; copper (II) chloride 1 uM
3,224,900	+		ABCV34_RS15185	0.53	-2.9
3,224,900	+		ABCV34_RS15185	0.53	-1.8
3,224,901	-		ABCV34_RS15185	0.54	-0.5
3,224,912	+		ABCV34_RS15185	0.55	-2.3
3,224,913	-		ABCV34_RS15185	0.55	-2.5
3,225,016	+		ABCV34_RS15185	0.69	-2.6
3,225,016	+		ABCV34_RS15185	0.69	-1.9
3,225,016	+		ABCV34_RS15185	0.69	-1.3
3,225,016	+		ABCV34_RS15185	0.69	-1.9
3,225,016	+		ABCV34_RS15185	0.69	-2.3
3,225,016	+		ABCV34_RS15185	0.69	-2.2
3,225,017	-		ABCV34_RS15185	0.69	-2.1
3,225,017	-		ABCV34_RS15185	0.69	-1.6
3,225,017	-		ABCV34_RS15185	0.69	-2.1
3,225,170	+		ABCV34_RS15185	0.90	-1.4
3,225,171	-		ABCV34_RS15185	0.90	-2.0
3,225,171	-		ABCV34_RS15185	0.90	-1.1
3,225,171	-		ABCV34_RS15185	0.90	-2.3
3,225,171	-		ABCV34_RS15185	0.90	-1.9
3,225,171	-		ABCV34_RS15185	0.90	-2.5
3,225,171	-		ABCV34_RS15185	0.90	-2.6
3,225,171	-		ABCV34_RS15185	0.90	-2.1
3,225,171	-		ABCV34_RS15185	0.90	-0.9
3,225,171	-		ABCV34_RS15185	0.90	-1.8
3,225,319	-				-2.3
3,225,319	-				-1.1
3,225,319	-				-1.1
3,225,380	-		ABCV34_RS15190	0.21	-3.2
3,225,380	-		ABCV34_RS15190	0.21	-2.3
3,225,380	-		ABCV34_RS15190	0.21	-2.2
3,225,380	-		ABCV34_RS15190	0.21	-1.7
3,225,638	-		ABCV34_RS15190	0.78	-2.7
3,225,691	+		ABCV34_RS15190	0.90	-0.5
3,225,692	-				-1.1
3,225,692	-				-2.1
3,225,692	-				-1.7
3,225,692	-				-1.0
3,225,713	-				-1.6
3,225,862	-				-2.9
3,225,862	-				-3.6
3,225,862	-				-3.1
3,225,862	-				-4.0
3,225,862	-				-1.5
3,225,862	-				-2.1
3,225,862	-				-3.6
3,225,862	-				-1.3
3,225,862	-				-2.3
3,225,862	-				-2.9
3,225,862	-				-4.7
3,225,862	-				-3.9
3,225,862	-				-0.7
3,225,862	-				-4.6
3,225,976	-		ABCV34_RS15195	0.17	-3.3
3,225,976	-		ABCV34_RS15195	0.17	-3.0
3,226,191	+		ABCV34_RS15195	0.33	-0.1
3,226,192	-		ABCV34_RS15195	0.33	-2.1
3,226,200	+		ABCV34_RS15195	0.34	-1.1
3,226,201	-		ABCV34_RS15195	0.34	-1.7
3,226,201	-		ABCV34_RS15195	0.34	-3.0
3,226,248	+		ABCV34_RS15195	0.37	-0.1
3,226,248	+		ABCV34_RS15195	0.37	-2.1
3,226,249	-		ABCV34_RS15195	0.37	-2.1
3,226,249	-		ABCV34_RS15195	0.37	-2.9
3,226,548	+		ABCV34_RS15195	0.60	-2.7
3,226,549	-		ABCV34_RS15195	0.60	-2.6
3,226,549	-		ABCV34_RS15195	0.60	-3.6
3,226,575	+		ABCV34_RS15195	0.62	-3.3
3,226,576	-		ABCV34_RS15195	0.62	-2.1
3,226,623	+		ABCV34_RS15195	0.66	-2.9
3,226,624	-		ABCV34_RS15195	0.66	-3.7
3,226,933	-		ABCV34_RS15195	0.89	-1.3
3,226,933	-		ABCV34_RS15195	0.89	-1.6
3,226,933	-		ABCV34_RS15195	0.89	-2.9
3,226,933	-		ABCV34_RS15195	0.89	-2.6
3,226,933	-		ABCV34_RS15195	0.89	-2.5
3,226,933	-		ABCV34_RS15195	0.89	-3.3
3,226,933	-		ABCV34_RS15195	0.89	-2.9
3,226,979	-				-3.4
3,226,979	-				-3.3
3,226,979	-				-5.1
3,226,980	+				-2.9
3,226,980	+				-0.1
3,226,980	+				-1.1
3,226,980	+				-1.7
3,226,980	+				-1.1
3,226,980	+				-0.1
3,226,980	+				-1.1
3,226,980	+				-2.4
3,226,980	+				-1.1
3,226,980	+				-2.7
3,226,980	+				-2.7
3,226,980	+				-2.1
3,226,980	+				-1.1
3,226,980	+				-2.1
3,226,980	+				-1.7
3,226,980	+				-0.1
3,226,980	+				-1.7
3,226,980	+				-2.1
3,226,981	-				-4.3
3,226,981	-				-3.8
3,226,981	-				-2.0
3,226,981	-				-3.1
3,226,981	-				-2.8
3,226,981	-				-1.8
3,226,981	-				-3.0
3,226,981	-				-2.8
3,226,981	-				-2.1
3,226,981	-				-3.4
3,226,981	-				-2.2
3,226,981	-				-4.5
3,226,981	-				-3.1
3,226,981	-				-3.0
3,227,129	-		ABCV34_RS15200	0.18	-1.2
3,227,129	-		ABCV34_RS15200	0.18	-0.7
3,227,293	+		ABCV34_RS15200	0.57	-1.4
3,227,293	+		ABCV34_RS15200	0.57	-2.4
3,227,294	-		ABCV34_RS15200	0.57	-2.9
3,227,294	-		ABCV34_RS15200	0.57	-0.5
3,227,294	-		ABCV34_RS15200	0.57	-1.4
3,227,416	+		ABCV34_RS15200	0.86	-3.8
3,227,416	+		ABCV34_RS15200	0.86	-1.1
3,227,417	-		ABCV34_RS15200	0.86	-1.5
3,227,417	-		ABCV34_RS15200	0.86	-1.5
3,227,417	-		ABCV34_RS15200	0.86	-1.3
3,227,417	-		ABCV34_RS15200	0.86	-1.8
3,227,853	+		ABCV34_RS15205	0.19	-0.8