Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS09255

Experiment: Anaerobic; copper (II) chloride 1 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS09245 and ABCV34_RS09250 are separated by 5 nucleotidesABCV34_RS09250 and ABCV34_RS09255 overlap by 34 nucleotidesABCV34_RS09255 and ABCV34_RS09260 overlap by 1 nucleotides ABCV34_RS09245: ABCV34_RS09245 - tRNA-Gln, at 1,980,261 to 1,980,337 _RS09245 ABCV34_RS09250: ABCV34_RS09250 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,980,343 to 1,981,350 _RS09250 ABCV34_RS09255: ABCV34_RS09255 - outer membrane lipoprotein LolB, at 1,981,317 to 1,981,961 _RS09255 ABCV34_RS09260: ABCV34_RS09260 - tetratricopeptide repeat protein, at 1,981,961 to 1,983,736 _RS09260 Position (kb) 1981 1982Strain fitness (log2 ratio) -3 -2 -1 0 1at 1982.181 kb on + strand, within ABCV34_RS09260at 1982.181 kb on + strand, within ABCV34_RS09260at 1982.182 kb on - strand, within ABCV34_RS09260

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; copper (II) chloride 1 uM
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1,982,181 + ABCV34_RS09260 0.12 -1.1
1,982,181 + ABCV34_RS09260 0.12 -2.1
1,982,182 - ABCV34_RS09260 0.12 -3.0

Or see this region's nucleotide sequence