Experiment: Anaerobic; copper (II) chloride 1 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02130 and ABCV34_RS02135 are separated by 35 nucleotides ABCV34_RS02135 and ABCV34_RS02140 overlap by 4 nucleotides ABCV34_RS02140 and ABCV34_RS02145 are separated by 0 nucleotides
ABCV34_RS02130: ABCV34_RS02130 - 30S ribosome-binding factor RbfA, at 479,191 to 479,601
_RS02130
ABCV34_RS02135: ABCV34_RS02135 - tRNA pseudouridine(55) synthase TruB, at 479,637 to 480,392
_RS02135
ABCV34_RS02140: ABCV34_RS02140 - translational GTPase TypA, at 480,389 to 482,209
_RS02140
ABCV34_RS02145: ABCV34_RS02145 - DMT family transporter, at 482,210 to 483,124
_RS02145
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 479.622 kb on + strand at 479.622 kb on + strand at 479.622 kb on + strand at 479.623 kb on - strand at 479.732 kb on + strand, within ABCV34_RS02135 at 479.732 kb on + strand, within ABCV34_RS02135 at 479.732 kb on + strand, within ABCV34_RS02135 at 479.732 kb on + strand, within ABCV34_RS02135 at 480.048 kb on + strand, within ABCV34_RS02135 at 480.048 kb on + strand, within ABCV34_RS02135 at 480.048 kb on + strand, within ABCV34_RS02135 at 480.048 kb on + strand, within ABCV34_RS02135 at 480.048 kb on + strand, within ABCV34_RS02135 at 480.048 kb on + strand, within ABCV34_RS02135 at 480.048 kb on + strand, within ABCV34_RS02135 at 480.048 kb on + strand, within ABCV34_RS02135 at 480.049 kb on - strand, within ABCV34_RS02135 at 480.049 kb on - strand, within ABCV34_RS02135 at 480.049 kb on - strand, within ABCV34_RS02135 at 480.049 kb on - strand, within ABCV34_RS02135 at 480.049 kb on - strand, within ABCV34_RS02135 at 480.049 kb on - strand, within ABCV34_RS02135 at 480.055 kb on - strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.174 kb on + strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.175 kb on - strand, within ABCV34_RS02135 at 480.326 kb on + strand at 480.334 kb on + strand at 480.335 kb on - strand at 482.162 kb on + strand at 482.253 kb on - strand at 482.271 kb on + strand at 482.271 kb on + strand at 482.297 kb on + strand at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.400 kb on + strand, within ABCV34_RS02145 at 482.401 kb on - strand, within ABCV34_RS02145 at 482.583 kb on + strand, within ABCV34_RS02145 at 482.583 kb on + strand, within ABCV34_RS02145 at 482.583 kb on + strand, within ABCV34_RS02145 at 482.593 kb on - strand, within ABCV34_RS02145 at 482.673 kb on - strand, within ABCV34_RS02145 at 482.673 kb on - strand, within ABCV34_RS02145 at 482.838 kb on + strand, within ABCV34_RS02145 at 482.838 kb on + strand, within ABCV34_RS02145 at 482.838 kb on + strand, within ABCV34_RS02145 at 482.838 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.934 kb on + strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.935 kb on - strand, within ABCV34_RS02145 at 482.978 kb on + strand, within ABCV34_RS02145 at 482.986 kb on - strand, within ABCV34_RS02145 at 483.178 kb on - strand at 483.192 kb on + strand at 483.192 kb on + strand at 483.193 kb on - strand at 483.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; copper (II) chloride 1 uM remove 479,622 + -1.5 479,622 + -0.2 479,622 + -1.4 479,623 - -2.1 479,732 + ABCV34_RS02135 0.13 -0.7 479,732 + ABCV34_RS02135 0.13 -1.2 479,732 + ABCV34_RS02135 0.13 -0.9 479,732 + ABCV34_RS02135 0.13 -2.0 480,048 + ABCV34_RS02135 0.54 -1.3 480,048 + ABCV34_RS02135 0.54 -1.2 480,048 + ABCV34_RS02135 0.54 +0.7 480,048 + ABCV34_RS02135 0.54 -1.3 480,048 + ABCV34_RS02135 0.54 -2.4 480,048 + ABCV34_RS02135 0.54 -1.0 480,048 + ABCV34_RS02135 0.54 -0.8 480,048 + ABCV34_RS02135 0.54 -0.7 480,049 - ABCV34_RS02135 0.54 -1.5 480,049 - ABCV34_RS02135 0.54 -2.3 480,049 - ABCV34_RS02135 0.54 +0.1 480,049 - ABCV34_RS02135 0.54 -2.1 480,049 - ABCV34_RS02135 0.54 -1.1 480,049 - ABCV34_RS02135 0.54 -1.9 480,055 - ABCV34_RS02135 0.55 +1.1 480,174 + ABCV34_RS02135 0.71 -1.0 480,174 + ABCV34_RS02135 0.71 -0.5 480,174 + ABCV34_RS02135 0.71 -0.9 480,174 + ABCV34_RS02135 0.71 -2.0 480,174 + ABCV34_RS02135 0.71 -1.1 480,174 + ABCV34_RS02135 0.71 -0.9 480,174 + ABCV34_RS02135 0.71 -1.3 480,174 + ABCV34_RS02135 0.71 -0.4 480,174 + ABCV34_RS02135 0.71 -1.4 480,174 + ABCV34_RS02135 0.71 -0.6 480,175 - ABCV34_RS02135 0.71 -0.6 480,175 - ABCV34_RS02135 0.71 -1.2 480,175 - ABCV34_RS02135 0.71 -1.5 480,175 - ABCV34_RS02135 0.71 -0.9 480,175 - ABCV34_RS02135 0.71 -0.4 480,175 - ABCV34_RS02135 0.71 -1.9 480,175 - ABCV34_RS02135 0.71 -1.5 480,175 - ABCV34_RS02135 0.71 -0.6 480,175 - ABCV34_RS02135 0.71 -3.5 480,175 - ABCV34_RS02135 0.71 -1.4 480,175 - ABCV34_RS02135 0.71 -3.8 480,326 + -1.4 480,334 + -2.6 480,335 - -2.2 482,162 + -1.5 482,253 - -3.2 482,271 + -2.8 482,271 + -1.5 482,297 + -2.0 482,400 + ABCV34_RS02145 0.21 -2.8 482,400 + ABCV34_RS02145 0.21 -2.7 482,400 + ABCV34_RS02145 0.21 -0.5 482,400 + ABCV34_RS02145 0.21 -3.7 482,400 + ABCV34_RS02145 0.21 +0.1 482,400 + ABCV34_RS02145 0.21 -2.1 482,401 - ABCV34_RS02145 0.21 -0.9 482,583 + ABCV34_RS02145 0.41 -2.2 482,583 + ABCV34_RS02145 0.41 -2.4 482,583 + ABCV34_RS02145 0.41 +0.1 482,593 - ABCV34_RS02145 0.42 -3.8 482,673 - ABCV34_RS02145 0.51 -1.5 482,673 - ABCV34_RS02145 0.51 +0.1 482,838 + ABCV34_RS02145 0.69 -2.2 482,838 + ABCV34_RS02145 0.69 -3.5 482,838 + ABCV34_RS02145 0.69 -2.7 482,838 + ABCV34_RS02145 0.69 -1.5 482,934 + ABCV34_RS02145 0.79 -1.8 482,934 + ABCV34_RS02145 0.79 -0.9 482,934 + ABCV34_RS02145 0.79 -2.2 482,934 + ABCV34_RS02145 0.79 -4.0 482,934 + ABCV34_RS02145 0.79 -2.7 482,934 + ABCV34_RS02145 0.79 +0.1 482,934 + ABCV34_RS02145 0.79 -1.3 482,934 + ABCV34_RS02145 0.79 -2.4 482,934 + ABCV34_RS02145 0.79 -3.0 482,934 + ABCV34_RS02145 0.79 -2.4 482,935 - ABCV34_RS02145 0.79 -1.7 482,935 - ABCV34_RS02145 0.79 -2.2 482,935 - ABCV34_RS02145 0.79 -2.2 482,935 - ABCV34_RS02145 0.79 -2.5 482,935 - ABCV34_RS02145 0.79 -0.4 482,935 - ABCV34_RS02145 0.79 -1.7 482,978 + ABCV34_RS02145 0.84 -2.0 482,986 - ABCV34_RS02145 0.85 -2.4 483,178 - -1.9 483,192 + -0.9 483,192 + -0.2 483,193 - -0.9 483,193 - -3.2
Or see this region's nucleotide sequence