Experiment: Anaerobic; ammonium iron(II) sulfate 10 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04340 and ABCV34_RS04345 are separated by 18 nucleotides ABCV34_RS04345 and ABCV34_RS04350 overlap by 70 nucleotides ABCV34_RS04350 and ABCV34_RS04355 overlap by 14 nucleotides ABCV34_RS04355 and ABCV34_RS04360 are separated by 11 nucleotides
ABCV34_RS04340: ABCV34_RS04340 - homoserine kinase, at 947,341 to 948,315
_RS04340
ABCV34_RS04345: ABCV34_RS04345 - BPSS1780 family membrane protein, at 948,334 to 949,149
_RS04345
ABCV34_RS04350: ABCV34_RS04350 - DUF192 domain-containing protein, at 949,080 to 949,484
_RS04350
ABCV34_RS04355: ABCV34_RS04355 - type II secretion system F family protein, at 949,471 to 950,334
_RS04355
ABCV34_RS04360: ABCV34_RS04360 - type II secretion system F family protein, at 950,346 to 951,194
_RS04360
Position (kb) 949
950 Strain fitness (log2 ratio) -2
-1
0
1 at 948.107 kb on - strand, within ABCV34_RS04340 at 948.208 kb on + strand, within ABCV34_RS04340 at 948.308 kb on + strand at 948.655 kb on + strand, within ABCV34_RS04345 at 948.655 kb on + strand, within ABCV34_RS04345 at 948.655 kb on + strand, within ABCV34_RS04345 at 948.748 kb on + strand, within ABCV34_RS04345 at 948.748 kb on + strand, within ABCV34_RS04345 at 948.748 kb on + strand, within ABCV34_RS04345 at 948.748 kb on + strand, within ABCV34_RS04345 at 948.749 kb on - strand, within ABCV34_RS04345 at 948.749 kb on - strand, within ABCV34_RS04345 at 948.749 kb on - strand, within ABCV34_RS04345 at 948.749 kb on - strand, within ABCV34_RS04345 at 948.750 kb on + strand, within ABCV34_RS04345 at 948.751 kb on - strand, within ABCV34_RS04345 at 948.802 kb on + strand, within ABCV34_RS04345 at 948.802 kb on + strand, within ABCV34_RS04345 at 948.803 kb on - strand, within ABCV34_RS04345 at 948.803 kb on - strand, within ABCV34_RS04345 at 948.883 kb on + strand, within ABCV34_RS04345 at 948.883 kb on + strand, within ABCV34_RS04345 at 948.929 kb on - strand, within ABCV34_RS04345 at 949.061 kb on - strand, within ABCV34_RS04345 at 949.061 kb on - strand, within ABCV34_RS04345 at 949.081 kb on + strand at 949.082 kb on - strand at 949.147 kb on + strand at 949.248 kb on + strand, within ABCV34_RS04350 at 949.458 kb on + strand at 949.458 kb on + strand at 949.458 kb on + strand at 949.459 kb on - strand at 949.459 kb on - strand at 949.459 kb on - strand at 949.488 kb on + strand at 949.489 kb on - strand at 949.489 kb on - strand at 949.489 kb on - strand at 950.431 kb on + strand, within ABCV34_RS04360 at 950.431 kb on + strand, within ABCV34_RS04360 at 950.432 kb on - strand, within ABCV34_RS04360
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; ammonium iron(II) sulfate 10 uM remove 948,107 - ABCV34_RS04340 0.79 -2.2 948,208 + ABCV34_RS04340 0.89 -0.9 948,308 + -0.6 948,655 + ABCV34_RS04345 0.39 -1.5 948,655 + ABCV34_RS04345 0.39 -0.9 948,655 + ABCV34_RS04345 0.39 -1.9 948,748 + ABCV34_RS04345 0.51 -2.2 948,748 + ABCV34_RS04345 0.51 +0.1 948,748 + ABCV34_RS04345 0.51 -0.9 948,748 + ABCV34_RS04345 0.51 -1.9 948,749 - ABCV34_RS04345 0.51 -0.9 948,749 - ABCV34_RS04345 0.51 +0.1 948,749 - ABCV34_RS04345 0.51 -0.9 948,749 - ABCV34_RS04345 0.51 -0.9 948,750 + ABCV34_RS04345 0.51 -1.5 948,751 - ABCV34_RS04345 0.51 -1.5 948,802 + ABCV34_RS04345 0.57 -2.2 948,802 + ABCV34_RS04345 0.57 -1.9 948,803 - ABCV34_RS04345 0.57 -1.5 948,803 - ABCV34_RS04345 0.57 -1.5 948,883 + ABCV34_RS04345 0.67 -2.2 948,883 + ABCV34_RS04345 0.67 +0.1 948,929 - ABCV34_RS04345 0.73 -1.5 949,061 - ABCV34_RS04345 0.89 +0.1 949,061 - ABCV34_RS04345 0.89 -0.9 949,081 + -0.9 949,082 - -2.5 949,147 + -2.1 949,248 + ABCV34_RS04350 0.41 -2.0 949,458 + -0.7 949,458 + -2.2 949,458 + -1.6 949,459 - -0.2 949,459 - -1.9 949,459 - -2.2 949,488 + -0.1 949,489 - -1.1 949,489 - -2.1 949,489 - -1.7 950,431 + ABCV34_RS04360 0.10 -2.6 950,431 + ABCV34_RS04360 0.10 -1.1 950,432 - ABCV34_RS04360 0.10 -2.0
Or see this region's nucleotide sequence