Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS09625

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS09620 and ECOLIN_RS09625 are separated by 100 nucleotidesECOLIN_RS09625 and ECOLIN_RS09630 are separated by 105 nucleotides ECOLIN_RS09620: ECOLIN_RS09620 - 6-phosphofructokinase II, at 1,893,778 to 1,894,707 _RS09620 ECOLIN_RS09625: ECOLIN_RS09625 - type V toxin-antitoxin system endoribonuclease antitoxin GhoS, at 1,894,808 to 1,895,098 _RS09625 ECOLIN_RS09630: ECOLIN_RS09630 - fructosamine kinase family protein, at 1,895,204 to 1,896,064 _RS09630 Position (kb) 1894 1895 1896Strain fitness (log2 ratio) -1 0 1at 1894.061 kb on + strand, within ECOLIN_RS09620at 1895.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,894,061 + ECOLIN_RS09620 0.30 -0.3
1,895,173 - -0.3

Or see this region's nucleotide sequence