Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08565

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08560 and ECOLIN_RS08565 are separated by 155 nucleotidesECOLIN_RS08565 and ECOLIN_RS08575 are separated by 361 nucleotides ECOLIN_RS08560: ECOLIN_RS08560 - acid resistance gamma-aminobutyrate antiporter GadC, at 1,682,683 to 1,684,218 _RS08560 ECOLIN_RS08565: ECOLIN_RS08565 - glutamate decarboxylase, at 1,684,374 to 1,685,774 _RS08565 ECOLIN_RS08575: ECOLIN_RS08575 - M16 family metallopeptidase, at 1,686,136 to 1,688,919 _RS08575 Position (kb) 1684 1685 1686Strain fitness (log2 ratio) -1 0 1at 1683.507 kb on + strand, within ECOLIN_RS08560at 1684.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,683,507 + ECOLIN_RS08560 0.54 -0.7
1,684,079 - -0.2

Or see this region's nucleotide sequence