Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS03115

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS03110 and ECOLIN_RS03115 overlap by 14 nucleotidesECOLIN_RS03115 and ECOLIN_RS03120 are separated by 149 nucleotides ECOLIN_RS03110: ECOLIN_RS03110 - bacteriophage adsorption protein NfrA, at 636,818 to 639,790 _RS03110 ECOLIN_RS03115: ECOLIN_RS03115 - 'cyclic di-3',5'-guanylate-activated glycosyltransferase NrfB' pseudo=_no_value transl_table=11, at 639,777 to 642,014 _RS03115 ECOLIN_RS03120: ECOLIN_RS03120 - Cu(+)/Ag(+) sensor histidine kinase CusS, at 642,164 to 643,606 _RS03120 Position (kb) 639 640 641 642 643Strain fitness (log2 ratio) -1 0 1 2at 638.841 kb on + strand, within ECOLIN_RS03110at 639.293 kb on + strand, within ECOLIN_RS03110at 639.649 kb on - strandat 640.217 kb on + strand, within ECOLIN_RS03115at 640.251 kb on - strand, within ECOLIN_RS03115at 640.960 kb on + strand, within ECOLIN_RS03115at 642.026 kb on - strandat 642.702 kb on + strand, within ECOLIN_RS03120

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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638,841 + ECOLIN_RS03110 0.68 +0.6
639,293 + ECOLIN_RS03110 0.83 +1.9
639,649 - +1.2
640,217 + ECOLIN_RS03115 0.20 +0.1
640,251 - ECOLIN_RS03115 0.21 +1.8
640,960 + ECOLIN_RS03115 0.53 +1.0
642,026 - -0.5
642,702 + ECOLIN_RS03120 0.37 -0.2

Or see this region's nucleotide sequence