Experiment: Anaerobic; Cobalt chloride 2 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02770 and ABCV34_RS02775 are separated by 114 nucleotides ABCV34_RS02775 and ABCV34_RS02780 are separated by 72 nucleotides
ABCV34_RS02770: ABCV34_RS02770 - PDR/VanB family oxidoreductase, at 618,947 to 619,921
_RS02770
ABCV34_RS02775: ABCV34_RS02775 - ABC transporter substrate-binding protein, at 620,036 to 621,205
_RS02775
ABCV34_RS02780: ABCV34_RS02780 - aldo/keto reductase, at 621,278 to 622,276
_RS02780
Position (kb) 620
621
622 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 619.094 kb on + strand, within ABCV34_RS02770 at 619.095 kb on - strand, within ABCV34_RS02770 at 619.095 kb on - strand, within ABCV34_RS02770 at 619.095 kb on - strand, within ABCV34_RS02770 at 619.095 kb on - strand, within ABCV34_RS02770 at 619.106 kb on + strand, within ABCV34_RS02770 at 619.106 kb on + strand, within ABCV34_RS02770 at 619.107 kb on - strand, within ABCV34_RS02770 at 619.107 kb on - strand, within ABCV34_RS02770 at 619.304 kb on - strand, within ABCV34_RS02770 at 619.364 kb on + strand, within ABCV34_RS02770 at 619.364 kb on + strand, within ABCV34_RS02770 at 619.364 kb on + strand, within ABCV34_RS02770 at 619.364 kb on + strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.538 kb on + strand, within ABCV34_RS02770 at 619.539 kb on - strand, within ABCV34_RS02770 at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.049 kb on + strand at 620.050 kb on - strand at 620.050 kb on - strand at 620.192 kb on + strand, within ABCV34_RS02775 at 620.192 kb on + strand, within ABCV34_RS02775 at 620.193 kb on - strand, within ABCV34_RS02775 at 620.193 kb on - strand, within ABCV34_RS02775 at 620.441 kb on + strand, within ABCV34_RS02775 at 620.441 kb on + strand, within ABCV34_RS02775 at 620.441 kb on + strand, within ABCV34_RS02775 at 620.452 kb on + strand, within ABCV34_RS02775 at 620.452 kb on + strand, within ABCV34_RS02775 at 620.452 kb on + strand, within ABCV34_RS02775 at 620.453 kb on - strand, within ABCV34_RS02775 at 620.453 kb on - strand, within ABCV34_RS02775 at 620.453 kb on - strand, within ABCV34_RS02775 at 620.453 kb on - strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.544 kb on - strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.654 kb on + strand, within ABCV34_RS02775 at 620.654 kb on + strand, within ABCV34_RS02775 at 620.654 kb on + strand, within ABCV34_RS02775 at 620.654 kb on + strand, within ABCV34_RS02775 at 620.800 kb on + strand, within ABCV34_RS02775 at 620.861 kb on + strand, within ABCV34_RS02775 at 620.862 kb on - strand, within ABCV34_RS02775 at 620.862 kb on - strand, within ABCV34_RS02775 at 620.910 kb on - strand, within ABCV34_RS02775 at 620.922 kb on - strand, within ABCV34_RS02775 at 621.116 kb on + strand at 621.116 kb on + strand at 621.116 kb on + strand at 621.117 kb on - strand at 621.117 kb on - strand at 621.117 kb on - strand at 621.118 kb on + strand at 621.118 kb on + strand at 621.118 kb on + strand at 621.118 kb on + strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.203 kb on + strand at 621.204 kb on - strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.241 kb on + strand at 621.241 kb on + strand at 621.242 kb on - strand at 621.242 kb on - strand at 621.242 kb on - strand at 621.242 kb on - strand at 621.242 kb on - strand at 621.265 kb on + strand at 621.277 kb on + strand at 621.277 kb on + strand at 621.277 kb on + strand at 621.278 kb on - strand at 621.354 kb on - strand at 621.613 kb on + strand, within ABCV34_RS02780 at 621.614 kb on - strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.635 kb on + strand, within ABCV34_RS02780 at 621.635 kb on + strand, within ABCV34_RS02780 at 621.635 kb on + strand, within ABCV34_RS02780 at 621.636 kb on - strand, within ABCV34_RS02780 at 621.636 kb on - strand, within ABCV34_RS02780 at 621.800 kb on + strand, within ABCV34_RS02780 at 621.800 kb on + strand, within ABCV34_RS02780 at 621.801 kb on - strand, within ABCV34_RS02780 at 621.801 kb on - strand, within ABCV34_RS02780 at 621.801 kb on - strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; Cobalt chloride 2 uM remove 619,094 + ABCV34_RS02770 0.15 -2.0 619,095 - ABCV34_RS02770 0.15 -2.1 619,095 - ABCV34_RS02770 0.15 -1.5 619,095 - ABCV34_RS02770 0.15 -2.3 619,095 - ABCV34_RS02770 0.15 -1.2 619,106 + ABCV34_RS02770 0.16 -1.9 619,106 + ABCV34_RS02770 0.16 -0.6 619,107 - ABCV34_RS02770 0.16 -2.9 619,107 - ABCV34_RS02770 0.16 -3.9 619,304 - ABCV34_RS02770 0.37 -1.1 619,364 + ABCV34_RS02770 0.43 -0.8 619,364 + ABCV34_RS02770 0.43 -1.1 619,364 + ABCV34_RS02770 0.43 -1.4 619,364 + ABCV34_RS02770 0.43 -1.2 619,365 - ABCV34_RS02770 0.43 -1.3 619,365 - ABCV34_RS02770 0.43 -1.5 619,365 - ABCV34_RS02770 0.43 -1.0 619,365 - ABCV34_RS02770 0.43 -2.4 619,365 - ABCV34_RS02770 0.43 -1.5 619,365 - ABCV34_RS02770 0.43 -1.5 619,365 - ABCV34_RS02770 0.43 -1.0 619,365 - ABCV34_RS02770 0.43 +0.2 619,365 - ABCV34_RS02770 0.43 -1.6 619,365 - ABCV34_RS02770 0.43 -0.3 619,517 + ABCV34_RS02770 0.58 -1.6 619,517 + ABCV34_RS02770 0.58 -1.0 619,517 + ABCV34_RS02770 0.58 -1.1 619,517 + ABCV34_RS02770 0.58 -2.1 619,517 + ABCV34_RS02770 0.58 -1.2 619,517 + ABCV34_RS02770 0.58 -1.4 619,517 + ABCV34_RS02770 0.58 -0.8 619,517 + ABCV34_RS02770 0.58 -1.2 619,518 - ABCV34_RS02770 0.59 -1.8 619,518 - ABCV34_RS02770 0.59 -0.2 619,518 - ABCV34_RS02770 0.59 -1.9 619,518 - ABCV34_RS02770 0.59 -1.8 619,518 - ABCV34_RS02770 0.59 -2.0 619,518 - ABCV34_RS02770 0.59 -1.6 619,518 - ABCV34_RS02770 0.59 -2.5 619,538 + ABCV34_RS02770 0.61 -1.7 619,539 - ABCV34_RS02770 0.61 -1.5 619,832 + +0.2 619,832 + -0.5 619,832 + -2.1 619,832 + -1.0 619,832 + -0.9 619,832 + -1.8 619,832 + -1.6 619,833 - -2.0 619,833 - -1.8 619,833 - -1.8 619,833 - -1.8 619,833 - -0.4 619,833 - -1.5 619,833 - -1.9 620,033 + -1.1 620,033 + -1.8 620,033 + -1.3 620,033 + -1.0 620,033 + -1.6 620,033 + -1.0 620,033 + -1.8 620,033 + -0.8 620,033 + -3.0 620,033 + -0.6 620,033 + -0.9 620,033 + -1.3 620,033 + -0.9 620,033 + -1.0 620,033 + -1.6 620,033 + -3.3 620,033 + +1.2 620,033 + +0.6 620,034 - -0.6 620,034 - -2.3 620,034 - -0.9 620,034 - -1.0 620,034 - -1.1 620,034 - -0.9 620,034 - -1.7 620,034 - -2.4 620,034 - -4.4 620,034 - -1.9 620,034 - -1.5 620,034 - -1.4 620,034 - -1.6 620,049 + -1.4 620,050 - +0.6 620,050 - -1.6 620,192 + ABCV34_RS02775 0.13 -0.9 620,192 + ABCV34_RS02775 0.13 -1.4 620,193 - ABCV34_RS02775 0.13 +0.0 620,193 - ABCV34_RS02775 0.13 -0.7 620,441 + ABCV34_RS02775 0.35 -1.5 620,441 + ABCV34_RS02775 0.35 -0.9 620,441 + ABCV34_RS02775 0.35 -0.9 620,452 + ABCV34_RS02775 0.36 -2.0 620,452 + ABCV34_RS02775 0.36 -1.4 620,452 + ABCV34_RS02775 0.36 +0.9 620,453 - ABCV34_RS02775 0.36 -1.3 620,453 - ABCV34_RS02775 0.36 -1.4 620,453 - ABCV34_RS02775 0.36 -1.0 620,453 - ABCV34_RS02775 0.36 -1.6 620,525 + ABCV34_RS02775 0.42 -1.6 620,525 + ABCV34_RS02775 0.42 -2.0 620,525 + ABCV34_RS02775 0.42 -0.7 620,525 + ABCV34_RS02775 0.42 -1.7 620,525 + ABCV34_RS02775 0.42 -1.3 620,525 + ABCV34_RS02775 0.42 -0.6 620,525 + ABCV34_RS02775 0.42 -0.8 620,525 + ABCV34_RS02775 0.42 -2.2 620,525 + ABCV34_RS02775 0.42 -2.5 620,526 - ABCV34_RS02775 0.42 -1.0 620,526 - ABCV34_RS02775 0.42 -0.9 620,526 - ABCV34_RS02775 0.42 -0.2 620,526 - ABCV34_RS02775 0.42 +1.2 620,526 - ABCV34_RS02775 0.42 -0.8 620,526 - ABCV34_RS02775 0.42 -1.5 620,526 - ABCV34_RS02775 0.42 -1.7 620,526 - ABCV34_RS02775 0.42 -1.7 620,526 - ABCV34_RS02775 0.42 -0.6 620,544 - ABCV34_RS02775 0.43 -0.9 620,623 + ABCV34_RS02775 0.50 -1.8 620,623 + ABCV34_RS02775 0.50 -3.4 620,623 + ABCV34_RS02775 0.50 -0.9 620,623 + ABCV34_RS02775 0.50 -0.7 620,623 + ABCV34_RS02775 0.50 -1.0 620,623 + ABCV34_RS02775 0.50 -2.3 620,623 + ABCV34_RS02775 0.50 -1.7 620,623 + ABCV34_RS02775 0.50 -1.2 620,624 - ABCV34_RS02775 0.50 -1.4 620,624 - ABCV34_RS02775 0.50 -0.4 620,624 - ABCV34_RS02775 0.50 -0.1 620,624 - ABCV34_RS02775 0.50 -1.4 620,624 - ABCV34_RS02775 0.50 -2.4 620,654 + ABCV34_RS02775 0.53 -2.1 620,654 + ABCV34_RS02775 0.53 -0.0 620,654 + ABCV34_RS02775 0.53 -1.3 620,654 + ABCV34_RS02775 0.53 -0.8 620,800 + ABCV34_RS02775 0.65 -1.7 620,861 + ABCV34_RS02775 0.71 +0.4 620,862 - ABCV34_RS02775 0.71 -2.8 620,862 - ABCV34_RS02775 0.71 -1.8 620,910 - ABCV34_RS02775 0.75 -0.6 620,922 - ABCV34_RS02775 0.76 -0.8 621,116 + -1.6 621,116 + -1.4 621,116 + -1.4 621,117 - -3.3 621,117 - -0.2 621,117 - -1.1 621,118 + -1.8 621,118 + +0.0 621,118 + -1.8 621,118 + -1.5 621,119 - -2.5 621,119 - -2.0 621,119 - -1.2 621,119 - -2.0 621,119 - -0.8 621,119 - -1.9 621,203 + -2.1 621,204 - -1.4 621,216 + -0.2 621,216 + -2.0 621,216 + -0.3 621,216 + -1.7 621,216 + -0.9 621,216 + -0.2 621,217 - -2.1 621,217 - -1.6 621,217 - -2.0 621,217 - -1.4 621,217 - -1.1 621,217 - -0.4 621,217 - -1.8 621,217 - -1.0 621,217 - -2.3 621,217 - -2.8 621,217 - -1.9 621,223 + -1.2 621,223 + +0.2 621,223 + -0.9 621,223 + -1.6 621,223 + -0.7 621,223 + -0.9 621,223 + -1.4 621,224 - -1.1 621,224 - -1.8 621,224 - -1.0 621,224 - -2.6 621,224 - -1.6 621,224 - -1.0 621,224 - -2.0 621,224 - -1.5 621,241 + -1.5 621,241 + -0.4 621,242 - -2.1 621,242 - -2.1 621,242 - -1.1 621,242 - -2.0 621,242 - -1.1 621,265 + -3.3 621,277 + -2.7 621,277 + +0.2 621,277 + -1.6 621,278 - -2.4 621,354 - -0.4 621,613 + ABCV34_RS02780 0.34 -2.1 621,614 - ABCV34_RS02780 0.34 -0.9 621,632 + ABCV34_RS02780 0.35 -3.1 621,632 + ABCV34_RS02780 0.35 -0.8 621,632 + ABCV34_RS02780 0.35 -1.1 621,632 + ABCV34_RS02780 0.35 -2.3 621,632 + ABCV34_RS02780 0.35 -3.9 621,632 + ABCV34_RS02780 0.35 -1.0 621,633 - ABCV34_RS02780 0.36 -1.4 621,633 - ABCV34_RS02780 0.36 -1.5 621,633 - ABCV34_RS02780 0.36 -2.1 621,633 - ABCV34_RS02780 0.36 -1.1 621,633 - ABCV34_RS02780 0.36 -1.1 621,633 - ABCV34_RS02780 0.36 -1.9 621,633 - ABCV34_RS02780 0.36 -0.6 621,635 + ABCV34_RS02780 0.36 -1.8 621,635 + ABCV34_RS02780 0.36 -1.2 621,635 + ABCV34_RS02780 0.36 -1.7 621,636 - ABCV34_RS02780 0.36 -0.8 621,636 - ABCV34_RS02780 0.36 -1.9 621,800 + ABCV34_RS02780 0.52 -1.6 621,800 + ABCV34_RS02780 0.52 -1.8 621,801 - ABCV34_RS02780 0.52 -1.3 621,801 - ABCV34_RS02780 0.52 -1.2 621,801 - ABCV34_RS02780 0.52 -0.8 621,988 + ABCV34_RS02780 0.71 -1.6 621,988 + ABCV34_RS02780 0.71 -1.7 621,988 + ABCV34_RS02780 0.71 -2.0 621,988 + ABCV34_RS02780 0.71 -1.0 621,988 + ABCV34_RS02780 0.71 -1.3 621,988 + ABCV34_RS02780 0.71 -0.4 621,988 + ABCV34_RS02780 0.71 -1.1 621,988 + ABCV34_RS02780 0.71 -1.9 621,989 - ABCV34_RS02780 0.71 -1.0 621,989 - ABCV34_RS02780 0.71 -2.6 621,989 - ABCV34_RS02780 0.71 -1.4 621,989 - ABCV34_RS02780 0.71 -1.2 621,989 - ABCV34_RS02780 0.71 -1.8 621,989 - ABCV34_RS02780 0.71 -0.8
Or see this region's nucleotide sequence