Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06845

Experiment: Anaerobic; Nickel (II) chloride 20 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS06835 and ABCV34_RS06840 are separated by 22 nucleotidesABCV34_RS06840 and ABCV34_RS06845 are separated by 42 nucleotidesABCV34_RS06845 and ABCV34_RS06850 are separated by 13 nucleotides ABCV34_RS06835: ABCV34_RS06835 - helix-turn-helix domain-containing protein, at 1,475,508 to 1,476,236 _RS06835 ABCV34_RS06840: ABCV34_RS06840 - hypothetical protein, at 1,476,259 to 1,476,510 _RS06840 ABCV34_RS06845: ABCV34_RS06845 - hypothetical protein, at 1,476,553 to 1,476,771 _RS06845 ABCV34_RS06850: ABCV34_RS06850 - cytochrome c oxidase accessory protein CcoG, at 1,476,785 to 1,478,290 _RS06850 Position (kb) 1476 1477Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1475.645 kb on - strand, within ABCV34_RS06835at 1475.665 kb on - strand, within ABCV34_RS06835at 1475.665 kb on - strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.694 kb on + strand, within ABCV34_RS06835at 1475.695 kb on - strand, within ABCV34_RS06835at 1475.695 kb on - strand, within ABCV34_RS06835at 1475.695 kb on - strand, within ABCV34_RS06835at 1475.695 kb on - strand, within ABCV34_RS06835at 1475.695 kb on - strand, within ABCV34_RS06835at 1475.695 kb on - strand, within ABCV34_RS06835at 1475.695 kb on - strand, within ABCV34_RS06835at 1475.765 kb on + strand, within ABCV34_RS06835at 1475.765 kb on + strand, within ABCV34_RS06835at 1475.765 kb on + strand, within ABCV34_RS06835at 1475.765 kb on + strand, within ABCV34_RS06835at 1475.766 kb on - strand, within ABCV34_RS06835at 1475.766 kb on - strand, within ABCV34_RS06835at 1476.040 kb on + strand, within ABCV34_RS06835at 1476.040 kb on + strand, within ABCV34_RS06835at 1476.040 kb on + strand, within ABCV34_RS06835at 1476.040 kb on + strand, within ABCV34_RS06835at 1476.041 kb on - strand, within ABCV34_RS06835at 1476.370 kb on - strand, within ABCV34_RS06840at 1476.371 kb on + strand, within ABCV34_RS06840at 1476.371 kb on + strand, within ABCV34_RS06840at 1476.371 kb on + strand, within ABCV34_RS06840at 1476.371 kb on + strand, within ABCV34_RS06840at 1476.371 kb on + strand, within ABCV34_RS06840at 1476.371 kb on + strand, within ABCV34_RS06840at 1476.371 kb on + strand, within ABCV34_RS06840at 1476.372 kb on - strand, within ABCV34_RS06840at 1476.372 kb on - strand, within ABCV34_RS06840at 1476.372 kb on - strand, within ABCV34_RS06840at 1476.372 kb on - strand, within ABCV34_RS06840at 1476.372 kb on - strand, within ABCV34_RS06840at 1476.372 kb on - strand, within ABCV34_RS06840at 1476.372 kb on - strand, within ABCV34_RS06840at 1476.536 kb on - strandat 1476.548 kb on + strandat 1476.629 kb on + strand, within ABCV34_RS06845at 1476.630 kb on - strand, within ABCV34_RS06845at 1476.761 kb on - strandat 1476.798 kb on + strandat 1476.798 kb on + strandat 1476.798 kb on + strandat 1476.798 kb on + strandat 1476.799 kb on - strandat 1476.799 kb on - strandat 1476.799 kb on - strandat 1476.799 kb on - strandat 1476.799 kb on - strandat 1476.799 kb on - strandat 1476.799 kb on - strandat 1476.874 kb on - strandat 1476.874 kb on - strandat 1477.194 kb on + strand, within ABCV34_RS06850at 1477.273 kb on + strand, within ABCV34_RS06850at 1477.273 kb on + strand, within ABCV34_RS06850at 1477.273 kb on + strand, within ABCV34_RS06850at 1477.274 kb on - strand, within ABCV34_RS06850at 1477.274 kb on - strand, within ABCV34_RS06850at 1477.274 kb on - strand, within ABCV34_RS06850at 1477.274 kb on - strand, within ABCV34_RS06850at 1477.274 kb on - strand, within ABCV34_RS06850at 1477.274 kb on - strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.357 kb on + strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.358 kb on - strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.359 kb on + strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.360 kb on - strand, within ABCV34_RS06850at 1477.500 kb on + strand, within ABCV34_RS06850at 1477.500 kb on + strand, within ABCV34_RS06850at 1477.501 kb on - strand, within ABCV34_RS06850at 1477.501 kb on - strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.563 kb on + strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.564 kb on - strand, within ABCV34_RS06850at 1477.617 kb on + strand, within ABCV34_RS06850at 1477.698 kb on + strand, within ABCV34_RS06850at 1477.698 kb on + strand, within ABCV34_RS06850at 1477.698 kb on + strand, within ABCV34_RS06850at 1477.699 kb on - strand, within ABCV34_RS06850

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; Nickel (II) chloride 20 uM
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1,475,645 - ABCV34_RS06835 0.19 -0.0
1,475,665 - ABCV34_RS06835 0.22 -3.6
1,475,665 - ABCV34_RS06835 0.22 -0.0
1,475,694 + ABCV34_RS06835 0.26 -5.1
1,475,694 + ABCV34_RS06835 0.26 -5.7
1,475,694 + ABCV34_RS06835 0.26 -6.3
1,475,694 + ABCV34_RS06835 0.26 -5.9
1,475,694 + ABCV34_RS06835 0.26 -3.9
1,475,694 + ABCV34_RS06835 0.26 -5.1
1,475,694 + ABCV34_RS06835 0.26 -5.5
1,475,694 + ABCV34_RS06835 0.26 -4.7
1,475,694 + ABCV34_RS06835 0.26 -4.6
1,475,694 + ABCV34_RS06835 0.26 -6.0
1,475,694 + ABCV34_RS06835 0.26 -6.3
1,475,694 + ABCV34_RS06835 0.26 -6.2
1,475,694 + ABCV34_RS06835 0.26 -4.5
1,475,695 - ABCV34_RS06835 0.26 -2.8
1,475,695 - ABCV34_RS06835 0.26 -1.0
1,475,695 - ABCV34_RS06835 0.26 -2.8
1,475,695 - ABCV34_RS06835 0.26 -2.0
1,475,695 - ABCV34_RS06835 0.26 -2.6
1,475,695 - ABCV34_RS06835 0.26 -1.6
1,475,695 - ABCV34_RS06835 0.26 -1.6
1,475,765 + ABCV34_RS06835 0.35 -3.4
1,475,765 + ABCV34_RS06835 0.35 -4.6
1,475,765 + ABCV34_RS06835 0.35 -4.1
1,475,765 + ABCV34_RS06835 0.35 -4.5
1,475,766 - ABCV34_RS06835 0.35 -3.6
1,475,766 - ABCV34_RS06835 0.35 -1.6
1,476,040 + ABCV34_RS06835 0.73 -3.7
1,476,040 + ABCV34_RS06835 0.73 -4.4
1,476,040 + ABCV34_RS06835 0.73 -5.0
1,476,040 + ABCV34_RS06835 0.73 -2.9
1,476,041 - ABCV34_RS06835 0.73 -2.8
1,476,370 - ABCV34_RS06840 0.44 -1.5
1,476,371 + ABCV34_RS06840 0.44 -2.0
1,476,371 + ABCV34_RS06840 0.44 -2.4
1,476,371 + ABCV34_RS06840 0.44 -3.0
1,476,371 + ABCV34_RS06840 0.44 -1.5
1,476,371 + ABCV34_RS06840 0.44 -2.0
1,476,371 + ABCV34_RS06840 0.44 -2.4
1,476,371 + ABCV34_RS06840 0.44 -2.0
1,476,372 - ABCV34_RS06840 0.45 -1.6
1,476,372 - ABCV34_RS06840 0.45 -1.3
1,476,372 - ABCV34_RS06840 0.45 -2.5
1,476,372 - ABCV34_RS06840 0.45 -0.5
1,476,372 - ABCV34_RS06840 0.45 -0.3
1,476,372 - ABCV34_RS06840 0.45 -0.7
1,476,372 - ABCV34_RS06840 0.45 -2.0
1,476,536 - -1.0
1,476,548 + -1.0
1,476,629 + ABCV34_RS06845 0.35 -1.9
1,476,630 - ABCV34_RS06845 0.35 -3.3
1,476,761 - -3.1
1,476,798 + -2.9
1,476,798 + -3.6
1,476,798 + -3.4
1,476,798 + -3.7
1,476,799 - -1.4
1,476,799 - -5.3
1,476,799 - -3.0
1,476,799 - -5.2
1,476,799 - -4.9
1,476,799 - -2.6
1,476,799 - -5.8
1,476,874 - -5.4
1,476,874 - -1.6
1,477,194 + ABCV34_RS06850 0.27 -1.1
1,477,273 + ABCV34_RS06850 0.32 -4.4
1,477,273 + ABCV34_RS06850 0.32 -1.1
1,477,273 + ABCV34_RS06850 0.32 -1.6
1,477,274 - ABCV34_RS06850 0.32 -3.9
1,477,274 - ABCV34_RS06850 0.32 -3.9
1,477,274 - ABCV34_RS06850 0.32 -4.7
1,477,274 - ABCV34_RS06850 0.32 -3.9
1,477,274 - ABCV34_RS06850 0.32 -3.9
1,477,274 - ABCV34_RS06850 0.32 -2.4
1,477,357 + ABCV34_RS06850 0.38 -4.7
1,477,357 + ABCV34_RS06850 0.38 -3.7
1,477,357 + ABCV34_RS06850 0.38 -2.4
1,477,357 + ABCV34_RS06850 0.38 -4.1
1,477,357 + ABCV34_RS06850 0.38 -3.5
1,477,357 + ABCV34_RS06850 0.38 -3.4
1,477,357 + ABCV34_RS06850 0.38 -3.2
1,477,357 + ABCV34_RS06850 0.38 -1.6
1,477,357 + ABCV34_RS06850 0.38 -4.8
1,477,357 + ABCV34_RS06850 0.38 -5.4
1,477,357 + ABCV34_RS06850 0.38 -5.3
1,477,357 + ABCV34_RS06850 0.38 -4.9
1,477,357 + ABCV34_RS06850 0.38 -3.7
1,477,358 - ABCV34_RS06850 0.38 -4.8
1,477,358 - ABCV34_RS06850 0.38 -3.4
1,477,358 - ABCV34_RS06850 0.38 -4.5
1,477,358 - ABCV34_RS06850 0.38 -3.6
1,477,358 - ABCV34_RS06850 0.38 -2.8
1,477,358 - ABCV34_RS06850 0.38 -4.7
1,477,358 - ABCV34_RS06850 0.38 -5.6
1,477,358 - ABCV34_RS06850 0.38 -3.1
1,477,358 - ABCV34_RS06850 0.38 -3.2
1,477,358 - ABCV34_RS06850 0.38 -3.1
1,477,358 - ABCV34_RS06850 0.38 -3.8
1,477,358 - ABCV34_RS06850 0.38 -4.9
1,477,358 - ABCV34_RS06850 0.38 -4.1
1,477,358 - ABCV34_RS06850 0.38 -2.1
1,477,358 - ABCV34_RS06850 0.38 -3.4
1,477,358 - ABCV34_RS06850 0.38 -5.0
1,477,358 - ABCV34_RS06850 0.38 -4.1
1,477,358 - ABCV34_RS06850 0.38 -4.1
1,477,358 - ABCV34_RS06850 0.38 -2.4
1,477,358 - ABCV34_RS06850 0.38 -3.2
1,477,359 + ABCV34_RS06850 0.38 -3.2
1,477,359 + ABCV34_RS06850 0.38 -4.4
1,477,359 + ABCV34_RS06850 0.38 -1.6
1,477,359 + ABCV34_RS06850 0.38 -3.2
1,477,359 + ABCV34_RS06850 0.38 -4.8
1,477,359 + ABCV34_RS06850 0.38 -2.6
1,477,359 + ABCV34_RS06850 0.38 -1.6
1,477,359 + ABCV34_RS06850 0.38 -2.6
1,477,359 + ABCV34_RS06850 0.38 -4.1
1,477,359 + ABCV34_RS06850 0.38 -5.9
1,477,359 + ABCV34_RS06850 0.38 -3.1
1,477,359 + ABCV34_RS06850 0.38 -3.1
1,477,359 + ABCV34_RS06850 0.38 -2.1
1,477,359 + ABCV34_RS06850 0.38 -2.6
1,477,359 + ABCV34_RS06850 0.38 -4.1
1,477,360 - ABCV34_RS06850 0.38 -2.6
1,477,360 - ABCV34_RS06850 0.38 -4.5
1,477,360 - ABCV34_RS06850 0.38 -1.6
1,477,360 - ABCV34_RS06850 0.38 -3.4
1,477,360 - ABCV34_RS06850 0.38 -3.6
1,477,360 - ABCV34_RS06850 0.38 -4.5
1,477,360 - ABCV34_RS06850 0.38 -3.8
1,477,360 - ABCV34_RS06850 0.38 -3.2
1,477,360 - ABCV34_RS06850 0.38 -4.6
1,477,360 - ABCV34_RS06850 0.38 -6.9
1,477,360 - ABCV34_RS06850 0.38 -4.8
1,477,360 - ABCV34_RS06850 0.38 -4.1
1,477,500 + ABCV34_RS06850 0.47 -4.2
1,477,500 + ABCV34_RS06850 0.47 -3.4
1,477,501 - ABCV34_RS06850 0.48 -5.2
1,477,501 - ABCV34_RS06850 0.48 -4.6
1,477,563 + ABCV34_RS06850 0.52 -2.6
1,477,563 + ABCV34_RS06850 0.52 -1.1
1,477,563 + ABCV34_RS06850 0.52 -4.1
1,477,563 + ABCV34_RS06850 0.52 -4.5
1,477,563 + ABCV34_RS06850 0.52 -3.1
1,477,563 + ABCV34_RS06850 0.52 -2.1
1,477,563 + ABCV34_RS06850 0.52 -2.9
1,477,563 + ABCV34_RS06850 0.52 -1.6
1,477,563 + ABCV34_RS06850 0.52 -4.6
1,477,563 + ABCV34_RS06850 0.52 -2.4
1,477,563 + ABCV34_RS06850 0.52 -2.6
1,477,563 + ABCV34_RS06850 0.52 -2.1
1,477,563 + ABCV34_RS06850 0.52 -3.5
1,477,564 - ABCV34_RS06850 0.52 -4.5
1,477,564 - ABCV34_RS06850 0.52 -2.9
1,477,564 - ABCV34_RS06850 0.52 -3.3
1,477,564 - ABCV34_RS06850 0.52 -2.1
1,477,564 - ABCV34_RS06850 0.52 -4.2
1,477,564 - ABCV34_RS06850 0.52 -4.6
1,477,564 - ABCV34_RS06850 0.52 -4.3
1,477,564 - ABCV34_RS06850 0.52 -6.4
1,477,564 - ABCV34_RS06850 0.52 -3.8
1,477,564 - ABCV34_RS06850 0.52 -3.2
1,477,564 - ABCV34_RS06850 0.52 -6.2
1,477,564 - ABCV34_RS06850 0.52 -5.6
1,477,564 - ABCV34_RS06850 0.52 -1.6
1,477,564 - ABCV34_RS06850 0.52 -3.2
1,477,564 - ABCV34_RS06850 0.52 -3.2
1,477,564 - ABCV34_RS06850 0.52 -3.9
1,477,564 - ABCV34_RS06850 0.52 -5.5
1,477,564 - ABCV34_RS06850 0.52 -4.4
1,477,617 + ABCV34_RS06850 0.55 -2.9
1,477,698 + ABCV34_RS06850 0.61 -3.4
1,477,698 + ABCV34_RS06850 0.61 -3.2
1,477,698 + ABCV34_RS06850 0.61 -3.2
1,477,699 - ABCV34_RS06850 0.61 -3.2

Or see this region's nucleotide sequence