Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01265

Experiment: Anaerobic; Nickel (II) chloride 20 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01260 and ABCV34_RS01265 are separated by 163 nucleotidesABCV34_RS01265 and ABCV34_RS01270 are separated by 114 nucleotides ABCV34_RS01260: ABCV34_RS01260 - magnesium-translocating P-type ATPase, at 264,761 to 267,478 _RS01260 ABCV34_RS01265: ABCV34_RS01265 - c-type cytochrome, at 267,642 to 268,508 _RS01265 ABCV34_RS01270: ABCV34_RS01270 - MFS transporter, at 268,623 to 270,005 _RS01270 Position (kb) 267 268 269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 266.645 kb on + strand, within ABCV34_RS01260at 266.645 kb on + strand, within ABCV34_RS01260at 266.816 kb on - strand, within ABCV34_RS01260at 266.816 kb on - strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.825 kb on + strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.826 kb on - strand, within ABCV34_RS01260at 266.827 kb on + strand, within ABCV34_RS01260at 266.827 kb on + strand, within ABCV34_RS01260at 266.827 kb on + strand, within ABCV34_RS01260at 266.827 kb on + strand, within ABCV34_RS01260at 266.827 kb on + strand, within ABCV34_RS01260at 266.827 kb on + strand, within ABCV34_RS01260at 266.827 kb on + strand, within ABCV34_RS01260at 266.828 kb on - strand, within ABCV34_RS01260at 266.828 kb on - strand, within ABCV34_RS01260at 266.828 kb on - strand, within ABCV34_RS01260at 266.828 kb on - strand, within ABCV34_RS01260at 266.828 kb on - strand, within ABCV34_RS01260at 266.833 kb on + strand, within ABCV34_RS01260at 266.833 kb on + strand, within ABCV34_RS01260at 266.833 kb on + strand, within ABCV34_RS01260at 266.833 kb on + strand, within ABCV34_RS01260at 266.834 kb on - strand, within ABCV34_RS01260at 266.834 kb on - strand, within ABCV34_RS01260at 267.044 kb on + strand, within ABCV34_RS01260at 267.045 kb on - strand, within ABCV34_RS01260at 267.045 kb on - strand, within ABCV34_RS01260at 267.045 kb on - strand, within ABCV34_RS01260at 267.045 kb on - strand, within ABCV34_RS01260at 267.045 kb on - strand, within ABCV34_RS01260at 267.045 kb on - strand, within ABCV34_RS01260at 267.221 kb on - strandat 267.221 kb on - strandat 267.356 kb on + strandat 267.356 kb on + strandat 267.357 kb on - strandat 267.357 kb on - strandat 267.357 kb on - strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.441 kb on + strandat 267.442 kb on - strandat 267.442 kb on - strandat 267.442 kb on - strandat 267.442 kb on - strandat 267.446 kb on - strandat 267.446 kb on - strandat 267.550 kb on + strandat 267.551 kb on - strandat 267.575 kb on + strandat 267.738 kb on + strand, within ABCV34_RS01265at 267.738 kb on + strand, within ABCV34_RS01265at 267.806 kb on - strand, within ABCV34_RS01265at 267.806 kb on - strand, within ABCV34_RS01265at 267.806 kb on - strand, within ABCV34_RS01265at 267.806 kb on - strand, within ABCV34_RS01265at 267.861 kb on + strand, within ABCV34_RS01265at 267.862 kb on - strand, within ABCV34_RS01265at 267.876 kb on - strand, within ABCV34_RS01265at 267.994 kb on - strand, within ABCV34_RS01265at 267.994 kb on - strand, within ABCV34_RS01265at 268.036 kb on - strand, within ABCV34_RS01265at 268.036 kb on - strand, within ABCV34_RS01265at 268.083 kb on + strand, within ABCV34_RS01265at 268.084 kb on - strand, within ABCV34_RS01265at 268.084 kb on - strand, within ABCV34_RS01265at 268.084 kb on - strand, within ABCV34_RS01265at 268.107 kb on + strand, within ABCV34_RS01265at 268.107 kb on + strand, within ABCV34_RS01265at 268.107 kb on + strand, within ABCV34_RS01265at 268.107 kb on + strand, within ABCV34_RS01265at 268.108 kb on - strand, within ABCV34_RS01265at 268.108 kb on - strand, within ABCV34_RS01265at 268.162 kb on - strand, within ABCV34_RS01265at 268.171 kb on - strand, within ABCV34_RS01265at 268.205 kb on + strand, within ABCV34_RS01265at 268.205 kb on + strand, within ABCV34_RS01265at 268.206 kb on - strand, within ABCV34_RS01265at 268.206 kb on - strand, within ABCV34_RS01265at 268.206 kb on - strand, within ABCV34_RS01265at 268.206 kb on - strand, within ABCV34_RS01265at 268.431 kb on - strandat 268.431 kb on - strandat 268.464 kb on + strandat 268.464 kb on + strandat 268.465 kb on - strandat 268.589 kb on + strandat 268.589 kb on + strandat 268.589 kb on + strandat 268.589 kb on + strandat 268.589 kb on + strandat 268.589 kb on + strandat 268.589 kb on + strandat 268.589 kb on + strandat 268.589 kb on + strandat 268.590 kb on - strandat 268.590 kb on - strandat 268.590 kb on - strandat 268.590 kb on - strandat 268.590 kb on - strandat 268.604 kb on + strandat 268.604 kb on + strandat 268.605 kb on - strandat 268.605 kb on - strandat 268.605 kb on - strandat 268.659 kb on - strandat 268.791 kb on + strand, within ABCV34_RS01270at 268.792 kb on - strand, within ABCV34_RS01270at 268.792 kb on - strand, within ABCV34_RS01270at 268.792 kb on - strand, within ABCV34_RS01270at 268.792 kb on - strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.926 kb on + strand, within ABCV34_RS01270at 268.927 kb on - strand, within ABCV34_RS01270at 268.927 kb on - strand, within ABCV34_RS01270at 268.927 kb on - strand, within ABCV34_RS01270at 268.927 kb on - strand, within ABCV34_RS01270at 268.927 kb on - strand, within ABCV34_RS01270at 268.927 kb on - strand, within ABCV34_RS01270at 269.031 kb on + strand, within ABCV34_RS01270at 269.031 kb on + strand, within ABCV34_RS01270at 269.031 kb on + strand, within ABCV34_RS01270at 269.031 kb on + strand, within ABCV34_RS01270at 269.032 kb on - strand, within ABCV34_RS01270at 269.032 kb on - strand, within ABCV34_RS01270at 269.032 kb on - strand, within ABCV34_RS01270at 269.032 kb on - strand, within ABCV34_RS01270at 269.032 kb on - strand, within ABCV34_RS01270at 269.032 kb on - strand, within ABCV34_RS01270at 269.094 kb on + strand, within ABCV34_RS01270at 269.094 kb on + strand, within ABCV34_RS01270at 269.095 kb on - strand, within ABCV34_RS01270at 269.106 kb on + strand, within ABCV34_RS01270at 269.106 kb on + strand, within ABCV34_RS01270at 269.107 kb on - strand, within ABCV34_RS01270at 269.107 kb on - strand, within ABCV34_RS01270at 269.107 kb on - strand, within ABCV34_RS01270at 269.107 kb on - strand, within ABCV34_RS01270at 269.107 kb on - strand, within ABCV34_RS01270at 269.130 kb on + strand, within ABCV34_RS01270at 269.130 kb on + strand, within ABCV34_RS01270at 269.131 kb on - strand, within ABCV34_RS01270at 269.131 kb on - strand, within ABCV34_RS01270at 269.378 kb on + strand, within ABCV34_RS01270at 269.378 kb on + strand, within ABCV34_RS01270at 269.379 kb on - strand, within ABCV34_RS01270at 269.421 kb on + strand, within ABCV34_RS01270at 269.421 kb on + strand, within ABCV34_RS01270at 269.421 kb on + strand, within ABCV34_RS01270at 269.421 kb on + strand, within ABCV34_RS01270at 269.421 kb on + strand, within ABCV34_RS01270at 269.421 kb on + strand, within ABCV34_RS01270at 269.421 kb on + strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.422 kb on - strand, within ABCV34_RS01270at 269.456 kb on + strand, within ABCV34_RS01270at 269.456 kb on + strand, within ABCV34_RS01270at 269.456 kb on + strand, within ABCV34_RS01270at 269.456 kb on + strand, within ABCV34_RS01270at 269.456 kb on + strand, within ABCV34_RS01270at 269.456 kb on + strand, within ABCV34_RS01270at 269.457 kb on - strand, within ABCV34_RS01270at 269.457 kb on - strand, within ABCV34_RS01270at 269.457 kb on - strand, within ABCV34_RS01270at 269.457 kb on - strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270at 269.505 kb on + strand, within ABCV34_RS01270

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; Nickel (II) chloride 20 uM
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266,645 + ABCV34_RS01260 0.69 +0.6
266,645 + ABCV34_RS01260 0.69 -1.1
266,816 - ABCV34_RS01260 0.76 -1.7
266,816 - ABCV34_RS01260 0.76 +0.0
266,825 + ABCV34_RS01260 0.76 -1.3
266,825 + ABCV34_RS01260 0.76 -0.7
266,825 + ABCV34_RS01260 0.76 -1.8
266,825 + ABCV34_RS01260 0.76 -1.0
266,825 + ABCV34_RS01260 0.76 -2.4
266,825 + ABCV34_RS01260 0.76 -1.1
266,825 + ABCV34_RS01260 0.76 -2.3
266,825 + ABCV34_RS01260 0.76 -1.0
266,825 + ABCV34_RS01260 0.76 -1.1
266,825 + ABCV34_RS01260 0.76 -1.0
266,825 + ABCV34_RS01260 0.76 -0.2
266,826 - ABCV34_RS01260 0.76 -1.0
266,826 - ABCV34_RS01260 0.76 -0.8
266,826 - ABCV34_RS01260 0.76 -1.6
266,826 - ABCV34_RS01260 0.76 -1.2
266,826 - ABCV34_RS01260 0.76 -0.2
266,826 - ABCV34_RS01260 0.76 -0.8
266,826 - ABCV34_RS01260 0.76 -1.6
266,826 - ABCV34_RS01260 0.76 -3.0
266,826 - ABCV34_RS01260 0.76 -0.2
266,826 - ABCV34_RS01260 0.76 -0.8
266,826 - ABCV34_RS01260 0.76 -1.6
266,827 + ABCV34_RS01260 0.76 -1.7
266,827 + ABCV34_RS01260 0.76 -2.6
266,827 + ABCV34_RS01260 0.76 -1.5
266,827 + ABCV34_RS01260 0.76 +0.4
266,827 + ABCV34_RS01260 0.76 +0.8
266,827 + ABCV34_RS01260 0.76 -1.0
266,827 + ABCV34_RS01260 0.76 -2.2
266,828 - ABCV34_RS01260 0.76 -0.6
266,828 - ABCV34_RS01260 0.76 -3.0
266,828 - ABCV34_RS01260 0.76 -0.8
266,828 - ABCV34_RS01260 0.76 -2.2
266,828 - ABCV34_RS01260 0.76 -0.6
266,833 + ABCV34_RS01260 0.76 -2.1
266,833 + ABCV34_RS01260 0.76 -0.8
266,833 + ABCV34_RS01260 0.76 -1.6
266,833 + ABCV34_RS01260 0.76 +0.0
266,834 - ABCV34_RS01260 0.76 -1.0
266,834 - ABCV34_RS01260 0.76 -0.3
267,044 + ABCV34_RS01260 0.84 -1.4
267,045 - ABCV34_RS01260 0.84 -1.1
267,045 - ABCV34_RS01260 0.84 -1.3
267,045 - ABCV34_RS01260 0.84 -1.6
267,045 - ABCV34_RS01260 0.84 -2.9
267,045 - ABCV34_RS01260 0.84 -2.4
267,045 - ABCV34_RS01260 0.84 -1.4
267,221 - -2.2
267,221 - -2.5
267,356 + -2.7
267,356 + -2.3
267,357 - -3.1
267,357 - -1.6
267,357 - -1.2
267,441 + -1.1
267,441 + -2.9
267,441 + -2.3
267,441 + -0.3
267,441 + -1.0
267,441 + -1.2
267,441 + -2.8
267,441 + -2.0
267,441 + +0.0
267,441 + -0.9
267,441 + -2.0
267,442 - -2.9
267,442 - -1.7
267,442 - -3.1
267,442 - -2.1
267,446 - -1.5
267,446 - -1.4
267,550 + -1.3
267,551 - +0.0
267,575 + -1.6
267,738 + ABCV34_RS01265 0.11 -2.0
267,738 + ABCV34_RS01265 0.11 +0.7
267,806 - ABCV34_RS01265 0.19 -1.6
267,806 - ABCV34_RS01265 0.19 -0.6
267,806 - ABCV34_RS01265 0.19 -1.0
267,806 - ABCV34_RS01265 0.19 -2.2
267,861 + ABCV34_RS01265 0.25 -1.9
267,862 - ABCV34_RS01265 0.25 -1.5
267,876 - ABCV34_RS01265 0.27 -1.6
267,994 - ABCV34_RS01265 0.41 -2.0
267,994 - ABCV34_RS01265 0.41 -2.6
268,036 - ABCV34_RS01265 0.45 -1.7
268,036 - ABCV34_RS01265 0.45 -0.8
268,083 + ABCV34_RS01265 0.51 -2.2
268,084 - ABCV34_RS01265 0.51 -1.5
268,084 - ABCV34_RS01265 0.51 -2.0
268,084 - ABCV34_RS01265 0.51 -1.6
268,107 + ABCV34_RS01265 0.54 -2.5
268,107 + ABCV34_RS01265 0.54 -1.2
268,107 + ABCV34_RS01265 0.54 -2.1
268,107 + ABCV34_RS01265 0.54 -2.1
268,108 - ABCV34_RS01265 0.54 -0.8
268,108 - ABCV34_RS01265 0.54 -1.6
268,162 - ABCV34_RS01265 0.60 -2.2
268,171 - ABCV34_RS01265 0.61 -1.2
268,205 + ABCV34_RS01265 0.65 -1.8
268,205 + ABCV34_RS01265 0.65 -2.0
268,206 - ABCV34_RS01265 0.65 -2.0
268,206 - ABCV34_RS01265 0.65 -1.6
268,206 - ABCV34_RS01265 0.65 -2.6
268,206 - ABCV34_RS01265 0.65 -1.0
268,431 - -0.6
268,431 - -1.6
268,464 + -1.5
268,464 + -1.8
268,465 - -1.8
268,589 + +0.0
268,589 + -1.8
268,589 + -3.4
268,589 + -0.3
268,589 + -2.0
268,589 + -1.4
268,589 + -1.9
268,589 + -1.6
268,589 + -2.6
268,590 - -1.9
268,590 - -1.6
268,590 - -1.8
268,590 - +1.6
268,590 - -2.1
268,604 + -0.7
268,604 + +0.0
268,605 - -0.7
268,605 - -1.3
268,605 - -2.3
268,659 - -1.7
268,791 + ABCV34_RS01270 0.12 -1.3
268,792 - ABCV34_RS01270 0.12 -1.8
268,792 - ABCV34_RS01270 0.12 -1.5
268,792 - ABCV34_RS01270 0.12 -2.8
268,792 - ABCV34_RS01270 0.12 -0.5
268,926 + ABCV34_RS01270 0.22 -1.5
268,926 + ABCV34_RS01270 0.22 +0.4
268,926 + ABCV34_RS01270 0.22 -3.1
268,926 + ABCV34_RS01270 0.22 -1.9
268,926 + ABCV34_RS01270 0.22 +1.5
268,926 + ABCV34_RS01270 0.22 -2.0
268,926 + ABCV34_RS01270 0.22 +0.9
268,926 + ABCV34_RS01270 0.22 -1.6
268,926 + ABCV34_RS01270 0.22 -2.3
268,927 - ABCV34_RS01270 0.22 -0.5
268,927 - ABCV34_RS01270 0.22 -0.9
268,927 - ABCV34_RS01270 0.22 -1.8
268,927 - ABCV34_RS01270 0.22 +0.0
268,927 - ABCV34_RS01270 0.22 -2.1
268,927 - ABCV34_RS01270 0.22 -1.4
269,031 + ABCV34_RS01270 0.30 -1.9
269,031 + ABCV34_RS01270 0.30 -1.8
269,031 + ABCV34_RS01270 0.30 -1.5
269,031 + ABCV34_RS01270 0.30 -2.1
269,032 - ABCV34_RS01270 0.30 -1.6
269,032 - ABCV34_RS01270 0.30 -2.0
269,032 - ABCV34_RS01270 0.30 -2.4
269,032 - ABCV34_RS01270 0.30 -2.1
269,032 - ABCV34_RS01270 0.30 +0.0
269,032 - ABCV34_RS01270 0.30 -1.4
269,094 + ABCV34_RS01270 0.34 -1.9
269,094 + ABCV34_RS01270 0.34 -1.4
269,095 - ABCV34_RS01270 0.34 -1.1
269,106 + ABCV34_RS01270 0.35 -1.4
269,106 + ABCV34_RS01270 0.35 -0.6
269,107 - ABCV34_RS01270 0.35 -1.5
269,107 - ABCV34_RS01270 0.35 -2.1
269,107 - ABCV34_RS01270 0.35 -1.1
269,107 - ABCV34_RS01270 0.35 -2.2
269,107 - ABCV34_RS01270 0.35 -2.5
269,130 + ABCV34_RS01270 0.37 -2.8
269,130 + ABCV34_RS01270 0.37 -1.4
269,131 - ABCV34_RS01270 0.37 -1.7
269,131 - ABCV34_RS01270 0.37 -2.1
269,378 + ABCV34_RS01270 0.55 -1.4
269,378 + ABCV34_RS01270 0.55 -2.3
269,379 - ABCV34_RS01270 0.55 -2.2
269,421 + ABCV34_RS01270 0.58 -1.3
269,421 + ABCV34_RS01270 0.58 -0.8
269,421 + ABCV34_RS01270 0.58 -0.6
269,421 + ABCV34_RS01270 0.58 -1.3
269,421 + ABCV34_RS01270 0.58 -2.4
269,421 + ABCV34_RS01270 0.58 -1.1
269,421 + ABCV34_RS01270 0.58 -0.7
269,422 - ABCV34_RS01270 0.58 -1.5
269,422 - ABCV34_RS01270 0.58 -2.2
269,422 - ABCV34_RS01270 0.58 -4.1
269,422 - ABCV34_RS01270 0.58 +1.8
269,422 - ABCV34_RS01270 0.58 -1.5
269,422 - ABCV34_RS01270 0.58 -2.5
269,422 - ABCV34_RS01270 0.58 -1.8
269,422 - ABCV34_RS01270 0.58 -1.8
269,422 - ABCV34_RS01270 0.58 -2.0
269,422 - ABCV34_RS01270 0.58 -1.1
269,456 + ABCV34_RS01270 0.60 -2.4
269,456 + ABCV34_RS01270 0.60 -1.1
269,456 + ABCV34_RS01270 0.60 +0.6
269,456 + ABCV34_RS01270 0.60 -1.9
269,456 + ABCV34_RS01270 0.60 -1.5
269,456 + ABCV34_RS01270 0.60 +0.0
269,457 - ABCV34_RS01270 0.60 -0.7
269,457 - ABCV34_RS01270 0.60 -2.9
269,457 - ABCV34_RS01270 0.60 -1.9
269,457 - ABCV34_RS01270 0.60 -1.2
269,505 + ABCV34_RS01270 0.64 -0.9
269,505 + ABCV34_RS01270 0.64 -1.4
269,505 + ABCV34_RS01270 0.64 -1.4
269,505 + ABCV34_RS01270 0.64 -0.6
269,505 + ABCV34_RS01270 0.64 -1.0
269,505 + ABCV34_RS01270 0.64 -1.5
269,505 + ABCV34_RS01270 0.64 -1.9
269,505 + ABCV34_RS01270 0.64 -0.3
269,505 + ABCV34_RS01270 0.64 -1.7
269,505 + ABCV34_RS01270 0.64 -2.5

Or see this region's nucleotide sequence