Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS10585

Experiment: Anaerobic; Nickel (II) chloride 20 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS10575 and ABCV34_RS10580 are separated by 12 nucleotidesABCV34_RS10580 and ABCV34_RS10585 overlap by 14 nucleotidesABCV34_RS10585 and ABCV34_RS10590 are separated by 13 nucleotides ABCV34_RS10575: ABCV34_RS10575 - anhydro-N-acetylmuramic acid kinase, at 2,255,961 to 2,257,133 _RS10575 ABCV34_RS10580: ABCV34_RS10580 - iron-sulfur cluster insertion protein ErpA, at 2,257,146 to 2,257,511 _RS10580 ABCV34_RS10585: ABCV34_RS10585 - DUF6776 family protein, at 2,257,498 to 2,258,235 _RS10585 ABCV34_RS10590: ABCV34_RS10590 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,258,249 to 2,259,307 _RS10590 Position (kb) 2257 2258 2259Strain fitness (log2 ratio) -3 -2 -1 0 1at 2256.639 kb on + strand, within ABCV34_RS10575at 2256.697 kb on + strand, within ABCV34_RS10575at 2256.994 kb on - strand, within ABCV34_RS10575at 2257.122 kb on + strandat 2257.234 kb on + strand, within ABCV34_RS10580at 2257.235 kb on - strand, within ABCV34_RS10580at 2257.259 kb on - strand, within ABCV34_RS10580at 2257.514 kb on + strandat 2257.515 kb on - strandat 2257.515 kb on - strandat 2257.515 kb on - strandat 2257.926 kb on - strand, within ABCV34_RS10585at 2257.926 kb on - strand, within ABCV34_RS10585

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; Nickel (II) chloride 20 uM
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2,256,639 + ABCV34_RS10575 0.58 -0.9
2,256,697 + ABCV34_RS10575 0.63 -1.3
2,256,994 - ABCV34_RS10575 0.88 -3.0
2,257,122 + -1.7
2,257,234 + ABCV34_RS10580 0.24 -2.1
2,257,235 - ABCV34_RS10580 0.24 -1.1
2,257,259 - ABCV34_RS10580 0.31 -2.7
2,257,514 + -1.1
2,257,515 - +0.1
2,257,515 - +0.1
2,257,515 - -1.0
2,257,926 - ABCV34_RS10585 0.58 -0.5
2,257,926 - ABCV34_RS10585 0.58 -0.6

Or see this region's nucleotide sequence