Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07305

Experiment: R2A_PIPES pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.5
1,579,249	+		LRK55_RS07295	0.31	+1.0
1,579,250	-		LRK55_RS07295	0.31	+0.6
1,579,250	-		LRK55_RS07295	0.31	+0.6
1,579,267	+		LRK55_RS07295	0.35	+0.0
1,579,267	+		LRK55_RS07295	0.35	-0.2
1,579,268	-		LRK55_RS07295	0.35	+1.3
1,579,268	-		LRK55_RS07295	0.35	-1.1
1,579,268	-		LRK55_RS07295	0.35	+1.3
1,579,268	-		LRK55_RS07295	0.35	-2.2
1,579,426	+		LRK55_RS07295	0.64	-0.1
1,579,426	+		LRK55_RS07295	0.64	-0.1
1,579,426	+		LRK55_RS07295	0.64	-0.2
1,579,426	+		LRK55_RS07295	0.64	+0.1
1,579,426	+		LRK55_RS07295	0.64	+0.0
1,579,426	+		LRK55_RS07295	0.64	+0.9
1,579,426	+		LRK55_RS07295	0.64	+0.6
1,579,427	-		LRK55_RS07295	0.64	+0.2
1,579,427	-		LRK55_RS07295	0.64	-0.6
1,579,427	-		LRK55_RS07295	0.64	-0.4
1,579,427	-		LRK55_RS07295	0.64	-3.3
1,579,427	-		LRK55_RS07295	0.64	-0.0
1,579,427	-		LRK55_RS07295	0.64	-0.5
1,579,427	-		LRK55_RS07295	0.64	+0.2
1,579,427	-		LRK55_RS07295	0.64	-0.3
1,579,427	-		LRK55_RS07295	0.64	+0.6
1,579,427	-		LRK55_RS07295	0.64	-0.5
1,579,453	+		LRK55_RS07295	0.69	-0.1
1,579,454	-		LRK55_RS07295	0.69	-0.4
1,579,454	-		LRK55_RS07295	0.69	-0.1
1,579,489	+		LRK55_RS07295	0.76	+0.3
1,579,489	+		LRK55_RS07295	0.76	+0.7
1,579,489	+		LRK55_RS07295	0.76	+0.5
1,579,490	-		LRK55_RS07295	0.76	-0.5
1,579,714	+				-0.1
1,579,714	+				-0.8
1,579,736	+				+0.5
1,579,736	+				-0.1
1,579,737	-				-0.8
1,579,737	-				+0.1
1,579,751	-				+0.4
1,579,808	+				+0.7
1,579,809	-				-0.2
1,579,831	-				+0.7
1,579,935	-		LRK55_RS07300	0.53	+0.2
1,579,935	-		LRK55_RS07300	0.53	-0.1
1,579,941	+		LRK55_RS07300	0.56	+0.4
1,579,941	+		LRK55_RS07300	0.56	+2.6
1,579,942	-		LRK55_RS07300	0.56	-0.4
1,579,942	-		LRK55_RS07300	0.56	+0.3
1,579,942	-		LRK55_RS07300	0.56	+0.4
1,579,942	-		LRK55_RS07300	0.56	+0.4
1,580,025	+				+0.5
1,580,025	+				+0.6
1,580,025	+				+0.6
1,580,026	-				-0.0
1,580,026	-				-0.5
1,580,026	-				-0.4
1,580,026	-				-0.5
1,580,026	-				-0.5
1,580,046	+				-0.6
1,580,047	-				-0.2
1,580,047	-				-0.1
1,580,121	+				-1.3
1,580,121	+				+0.0
1,580,121	+				+0.8
1,580,122	-				+0.0
1,580,200	+				+0.5
1,580,200	+				+0.3
1,580,205	-				-0.9
1,580,292	+				+0.2
1,580,292	+				-0.2
1,580,292	+				+1.4
1,580,292	+				+0.3
1,580,292	+				-3.2
1,580,293	-				-0.8
1,580,293	-				-0.0
1,580,293	-				+0.0
1,580,293	-				+0.2
1,580,293	-				-0.1
1,580,293	-				-0.5
1,580,293	-				+1.1
1,580,293	-				-1.2
1,580,293	-				-1.0
1,580,330	+				+1.0
1,580,331	-				+0.0
1,580,331	-				+0.7
1,580,349	+				-1.2
1,580,349	+				+0.8
1,580,350	-				+0.9
1,580,350	-				+0.5
1,580,350	-				+0.1
1,580,579	+		LRK55_RS07305	0.26	-0.6
1,580,579	+		LRK55_RS07305	0.26	+0.4
1,580,579	+		LRK55_RS07305	0.26	+1.3
1,580,579	+		LRK55_RS07305	0.26	+0.3
1,580,579	+		LRK55_RS07305	0.26	-1.1
1,580,579	+		LRK55_RS07305	0.26	-0.9
1,580,580	-		LRK55_RS07305	0.26	+0.2
1,580,580	-		LRK55_RS07305	0.26	-0.0
1,580,580	-		LRK55_RS07305	0.26	-0.1
1,580,711	+		LRK55_RS07305	0.36	-0.7
1,580,711	+		LRK55_RS07305	0.36	-0.0
1,580,711	+		LRK55_RS07305	0.36	+0.9
1,580,711	+		LRK55_RS07305	0.36	+0.5
1,580,711	+		LRK55_RS07305	0.36	-0.3
1,580,712	-		LRK55_RS07305	0.36	+0.2
1,580,712	-		LRK55_RS07305	0.36	-0.5
1,580,712	-		LRK55_RS07305	0.36	-1.1
1,580,712	-		LRK55_RS07305	0.36	+0.2
1,580,712	-		LRK55_RS07305	0.36	-0.9
1,580,720	+		LRK55_RS07305	0.37	-0.4
1,580,720	+		LRK55_RS07305	0.37	+0.5
1,580,720	+		LRK55_RS07305	0.37	+0.6
1,580,720	+		LRK55_RS07305	0.37	-0.9
1,580,720	+		LRK55_RS07305	0.37	+0.2
1,580,720	+		LRK55_RS07305	0.37	+0.8
1,580,720	+		LRK55_RS07305	0.37	-0.7
1,580,720	+		LRK55_RS07305	0.37	-0.6
1,580,720	+		LRK55_RS07305	0.37	-0.2
1,580,721	-		LRK55_RS07305	0.37	-0.9
1,580,721	-		LRK55_RS07305	0.37	-0.1
1,580,721	-		LRK55_RS07305	0.37	-0.2
1,580,721	-		LRK55_RS07305	0.37	+0.8
1,580,721	-		LRK55_RS07305	0.37	-0.3
1,580,721	-		LRK55_RS07305	0.37	+0.2
1,580,721	-		LRK55_RS07305	0.37	+0.8
1,580,721	-		LRK55_RS07305	0.37	-0.9
1,580,721	-		LRK55_RS07305	0.37	-0.1
1,580,721	-		LRK55_RS07305	0.37	-0.4
1,581,026	+		LRK55_RS07305	0.60	-0.3
1,581,077	+		LRK55_RS07305	0.64	+1.3
1,581,077	+		LRK55_RS07305	0.64	-1.4
1,581,077	+		LRK55_RS07305	0.64	-1.7
1,581,078	-		LRK55_RS07305	0.64	+1.8
1,581,116	+		LRK55_RS07305	0.67	+0.3
1,581,116	+		LRK55_RS07305	0.67	+1.1
1,581,116	+		LRK55_RS07305	0.67	-2.3
1,581,117	-		LRK55_RS07305	0.67	-0.3
1,581,117	-		LRK55_RS07305	0.67	+0.4
1,581,120	+		LRK55_RS07305	0.67	-0.3
1,581,120	+		LRK55_RS07305	0.67	+0.2
1,581,121	-		LRK55_RS07305	0.67	+1.0
1,581,121	-		LRK55_RS07305	0.67	+0.0
1,581,121	-		LRK55_RS07305	0.67	-0.5
1,581,121	-		LRK55_RS07305	0.67	-0.5
1,581,121	-		LRK55_RS07305	0.67	-0.2
1,581,121	-		LRK55_RS07305	0.67	-0.2
1,581,121	-		LRK55_RS07305	0.67	-0.5
1,581,121	-		LRK55_RS07305	0.67	-0.7
1,581,121	-		LRK55_RS07305	0.67	+0.3
1,581,158	+		LRK55_RS07305	0.70	+0.3
1,581,158	+		LRK55_RS07305	0.70	+0.5
1,581,158	+		LRK55_RS07305	0.70	+0.4
1,581,158	+		LRK55_RS07305	0.70	+0.6
1,581,158	+		LRK55_RS07305	0.70	-0.8
1,581,159	-		LRK55_RS07305	0.70	+0.5
1,581,159	-		LRK55_RS07305	0.70	-0.7
1,581,159	-		LRK55_RS07305	0.70	-0.2
1,581,159	-		LRK55_RS07305	0.70	-0.5
1,581,159	-		LRK55_RS07305	0.70	+0.3
1,581,159	-		LRK55_RS07305	0.70	+0.8
1,581,170	+		LRK55_RS07305	0.71	-0.4
1,581,170	+		LRK55_RS07305	0.71	+0.7
1,581,170	+		LRK55_RS07305	0.71	-0.9
1,581,170	+		LRK55_RS07305	0.71	+0.8
1,581,170	+		LRK55_RS07305	0.71	-0.2
1,581,170	+		LRK55_RS07305	0.71	-0.6
1,581,171	-		LRK55_RS07305	0.71	-0.1
1,581,171	-		LRK55_RS07305	0.71	+0.1
1,581,171	-		LRK55_RS07305	0.71	-0.4
1,581,171	-		LRK55_RS07305	0.71	-0.1
1,581,171	-		LRK55_RS07305	0.71	+1.3
1,581,171	-		LRK55_RS07305	0.71	+0.3
1,581,176	+		LRK55_RS07305	0.71	+1.3
1,581,176	+		LRK55_RS07305	0.71	-2.2
1,581,176	+		LRK55_RS07305	0.71	-0.6
1,581,176	+		LRK55_RS07305	0.71	-1.0
1,581,176	+		LRK55_RS07305	0.71	+0.6
1,581,176	+		LRK55_RS07305	0.71	+0.1
1,581,176	+		LRK55_RS07305	0.71	+0.2
1,581,176	+		LRK55_RS07305	0.71	-0.3
1,581,176	+		LRK55_RS07305	0.71	+0.5
1,581,177	-		LRK55_RS07305	0.71	-0.5
1,581,177	-		LRK55_RS07305	0.71	-2.1
1,581,177	-		LRK55_RS07305	0.71	-1.2
1,581,177	-		LRK55_RS07305	0.71	-0.2
1,581,178	+		LRK55_RS07305	0.71	+0.4
1,581,179	-		LRK55_RS07305	0.72	-0.0
1,581,179	-		LRK55_RS07305	0.72	+0.1
1,581,179	-		LRK55_RS07305	0.72	-0.0
1,581,206	+		LRK55_RS07305	0.74	+0.4
1,581,206	+		LRK55_RS07305	0.74	-1.2
1,581,207	-		LRK55_RS07305	0.74	+0.2
1,581,207	-		LRK55_RS07305	0.74	-0.3
1,581,207	-		LRK55_RS07305	0.74	-0.1
1,581,207	-		LRK55_RS07305	0.74	-0.4
1,581,263	+		LRK55_RS07305	0.78	-4.3
1,581,263	+		LRK55_RS07305	0.78	-2.2
1,581,263	+		LRK55_RS07305	0.78	-4.7
1,581,263	+		LRK55_RS07305	0.78	-2.8
1,581,263	+		LRK55_RS07305	0.78	-2.6
1,581,263	+		LRK55_RS07305	0.78	-3.4
1,581,263	+		LRK55_RS07305	0.78	-3.1
1,581,264	-		LRK55_RS07305	0.78	-1.3
1,581,264	-		LRK55_RS07305	0.78	-2.4
1,581,264	-		LRK55_RS07305	0.78	-1.3
1,581,346	+		LRK55_RS07305	0.84	+0.1
1,581,346	+		LRK55_RS07305	0.84	+0.7
1,581,346	+		LRK55_RS07305	0.84	-0.5
1,581,347	-		LRK55_RS07305	0.84	+0.8
1,581,434	+				-2.7
1,581,434	+				-0.0
1,581,434	+				+0.4
1,581,435	-				+0.3
1,581,618	+				+2.1
1,581,618	+				+0.3
1,581,618	+				+0.2
1,581,837	+		LRK55_RS07310	0.37	-2.1
1,581,837	+		LRK55_RS07310	0.37	+0.3
1,581,837	+		LRK55_RS07310	0.37	-1.3
1,581,837	+		LRK55_RS07310	0.37	+0.4
1,581,838	-		LRK55_RS07310	0.37	-0.9
1,581,838	-		LRK55_RS07310	0.37	-1.7
1,581,838	-		LRK55_RS07310	0.37	-0.7
1,581,838	-		LRK55_RS07310	0.37	+0.1
1,581,943	-		LRK55_RS07310	0.67	-0.1
1,581,943	-		LRK55_RS07310	0.67	-0.3
1,582,148	+		LRK55_RS07315	0.32	-1.6
1,582,205	+		LRK55_RS07315	0.52	+1.0
1,582,206	-		LRK55_RS07315	0.53	+0.1
1,582,206	-		LRK55_RS07315	0.53	-0.4
1,582,366	+				-1.0
1,582,450	+		LRK55_RS07320	0.24	-0.3
1,582,450	+		LRK55_RS07320	0.24	+2.0
1,582,450	+		LRK55_RS07320	0.24	+0.4
1,582,451	-		LRK55_RS07320	0.24	+0.7
1,582,451	-		LRK55_RS07320	0.24	+0.3