Experiment: R2A_PIPES pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS01740 and LRK55_RS01745 are separated by 81 nucleotides LRK55_RS01745 and LRK55_RS01750 are separated by 61 nucleotides LRK55_RS01750 and LRK55_RS01755 are separated by 14 nucleotides
LRK55_RS01740: LRK55_RS01740 - TolC family protein, at 368,236 to 369,507
_RS01740
LRK55_RS01745: LRK55_RS01745 - hypothetical protein, at 369,589 to 370,017
_RS01745
LRK55_RS01750: LRK55_RS01750 - DUF411 domain-containing protein, at 370,079 to 370,531
_RS01750
LRK55_RS01755: LRK55_RS01755 - c-type cytochrome, at 370,546 to 371,619
_RS01755
Position (kb) 370
371 Strain fitness (log2 ratio) -1
0
1 at 369.232 kb on + strand, within LRK55_RS01740 at 369.232 kb on + strand, within LRK55_RS01740 at 369.233 kb on - strand, within LRK55_RS01740 at 369.515 kb on + strand at 369.515 kb on + strand at 369.515 kb on + strand at 369.515 kb on + strand at 369.516 kb on - strand at 369.516 kb on - strand at 369.516 kb on - strand at 369.516 kb on - strand at 369.516 kb on - strand at 369.516 kb on - strand at 369.516 kb on - strand at 369.516 kb on - strand at 369.741 kb on + strand, within LRK55_RS01745 at 369.920 kb on + strand, within LRK55_RS01745 at 369.920 kb on + strand, within LRK55_RS01745 at 369.920 kb on + strand, within LRK55_RS01745 at 369.920 kb on + strand, within LRK55_RS01745 at 369.921 kb on - strand, within LRK55_RS01745 at 369.921 kb on - strand, within LRK55_RS01745 at 369.921 kb on - strand, within LRK55_RS01745 at 369.921 kb on - strand, within LRK55_RS01745 at 370.031 kb on + strand at 370.031 kb on + strand at 370.147 kb on - strand, within LRK55_RS01750 at 370.159 kb on + strand, within LRK55_RS01750 at 370.159 kb on + strand, within LRK55_RS01750 at 370.159 kb on + strand, within LRK55_RS01750 at 370.279 kb on - strand, within LRK55_RS01750 at 370.279 kb on - strand, within LRK55_RS01750 at 370.279 kb on - strand, within LRK55_RS01750 at 370.279 kb on - strand, within LRK55_RS01750 at 370.380 kb on + strand, within LRK55_RS01750 at 370.381 kb on - strand, within LRK55_RS01750 at 370.381 kb on - strand, within LRK55_RS01750 at 370.398 kb on + strand, within LRK55_RS01750 at 370.398 kb on + strand, within LRK55_RS01750 at 370.398 kb on + strand, within LRK55_RS01750 at 370.398 kb on + strand, within LRK55_RS01750 at 370.399 kb on - strand, within LRK55_RS01750 at 370.441 kb on - strand, within LRK55_RS01750 at 370.790 kb on + strand, within LRK55_RS01755 at 370.790 kb on + strand, within LRK55_RS01755 at 370.791 kb on - strand, within LRK55_RS01755 at 370.791 kb on - strand, within LRK55_RS01755 at 370.791 kb on - strand, within LRK55_RS01755 at 371.144 kb on + strand, within LRK55_RS01755 at 371.145 kb on - strand, within LRK55_RS01755 at 371.321 kb on + strand, within LRK55_RS01755 at 371.390 kb on + strand, within LRK55_RS01755 at 371.390 kb on + strand, within LRK55_RS01755 at 371.499 kb on - strand, within LRK55_RS01755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5 remove 369,232 + LRK55_RS01740 0.78 -0.6 369,232 + LRK55_RS01740 0.78 -1.5 369,233 - LRK55_RS01740 0.78 +1.1 369,515 + -0.2 369,515 + +0.1 369,515 + -0.2 369,515 + +0.4 369,516 - +0.5 369,516 - -1.2 369,516 - +0.3 369,516 - +0.0 369,516 - -0.3 369,516 - +0.4 369,516 - +0.6 369,516 - +0.6 369,741 + LRK55_RS01745 0.35 +1.2 369,920 + LRK55_RS01745 0.77 +0.6 369,920 + LRK55_RS01745 0.77 +0.4 369,920 + LRK55_RS01745 0.77 +0.6 369,920 + LRK55_RS01745 0.77 +1.0 369,921 - LRK55_RS01745 0.77 +0.8 369,921 - LRK55_RS01745 0.77 +0.8 369,921 - LRK55_RS01745 0.77 +0.1 369,921 - LRK55_RS01745 0.77 -0.2 370,031 + -1.4 370,031 + +0.3 370,147 - LRK55_RS01750 0.15 +1.0 370,159 + LRK55_RS01750 0.18 -0.3 370,159 + LRK55_RS01750 0.18 +0.3 370,159 + LRK55_RS01750 0.18 -0.4 370,279 - LRK55_RS01750 0.44 +0.6 370,279 - LRK55_RS01750 0.44 +0.1 370,279 - LRK55_RS01750 0.44 +1.1 370,279 - LRK55_RS01750 0.44 -0.0 370,380 + LRK55_RS01750 0.66 +0.4 370,381 - LRK55_RS01750 0.67 +0.4 370,381 - LRK55_RS01750 0.67 -0.2 370,398 + LRK55_RS01750 0.70 +0.2 370,398 + LRK55_RS01750 0.70 +0.2 370,398 + LRK55_RS01750 0.70 -1.0 370,398 + LRK55_RS01750 0.70 +0.0 370,399 - LRK55_RS01750 0.71 -0.6 370,441 - LRK55_RS01750 0.80 +1.2 370,790 + LRK55_RS01755 0.23 -1.4 370,790 + LRK55_RS01755 0.23 -0.7 370,791 - LRK55_RS01755 0.23 +0.6 370,791 - LRK55_RS01755 0.23 +0.9 370,791 - LRK55_RS01755 0.23 +1.6 371,144 + LRK55_RS01755 0.56 -0.5 371,145 - LRK55_RS01755 0.56 +0.2 371,321 + LRK55_RS01755 0.72 +0.5 371,390 + LRK55_RS01755 0.79 -0.2 371,390 + LRK55_RS01755 0.79 +0.4 371,499 - LRK55_RS01755 0.89 -0.6
Or see this region's nucleotide sequence