Experiment: R2A_PIPES pH 4.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS01565 and LRK55_RS01570 overlap by 4 nucleotides LRK55_RS01570 and LRK55_RS01575 are separated by 68 nucleotides LRK55_RS01575 and LRK55_RS01580 are separated by 95 nucleotides LRK55_RS01580 and LRK55_RS01585 are separated by 181 nucleotides
LRK55_RS01565: LRK55_RS01565 - dienelactone hydrolase family protein, at 334,427 to 335,095
_RS01565
LRK55_RS01570: LRK55_RS01570 - HIT family protein, at 335,092 to 335,508
_RS01570
LRK55_RS01575: LRK55_RS01575 - hypothetical protein, at 335,577 to 336,071
_RS01575
LRK55_RS01580: LRK55_RS01580 - dCTP deaminase, at 336,167 to 336,733
_RS01580
LRK55_RS01585: LRK55_RS01585 - NADPH-dependent FMN reductase, at 336,915 to 337,460
_RS01585
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.589 kb on + strand, within LRK55_RS01565 at 334.589 kb on + strand, within LRK55_RS01565 at 334.591 kb on + strand, within LRK55_RS01565 at 334.592 kb on - strand, within LRK55_RS01565 at 334.592 kb on - strand, within LRK55_RS01565 at 334.592 kb on - strand, within LRK55_RS01565 at 334.773 kb on - strand, within LRK55_RS01565 at 334.835 kb on + strand, within LRK55_RS01565 at 334.835 kb on + strand, within LRK55_RS01565 at 334.835 kb on + strand, within LRK55_RS01565 at 334.835 kb on + strand, within LRK55_RS01565 at 334.835 kb on + strand, within LRK55_RS01565 at 334.835 kb on + strand, within LRK55_RS01565 at 334.835 kb on + strand, within LRK55_RS01565 at 334.836 kb on - strand, within LRK55_RS01565 at 334.836 kb on - strand, within LRK55_RS01565 at 334.836 kb on - strand, within LRK55_RS01565 at 334.836 kb on - strand, within LRK55_RS01565 at 334.836 kb on - strand, within LRK55_RS01565 at 334.836 kb on - strand, within LRK55_RS01565 at 334.836 kb on - strand, within LRK55_RS01565 at 334.836 kb on - strand, within LRK55_RS01565 at 334.839 kb on - strand, within LRK55_RS01565 at 334.839 kb on - strand, within LRK55_RS01565 at 334.980 kb on - strand, within LRK55_RS01565 at 335.021 kb on + strand, within LRK55_RS01565 at 335.205 kb on + strand, within LRK55_RS01570 at 335.599 kb on + strand at 335.599 kb on + strand at 335.599 kb on + strand at 335.599 kb on + strand at 335.599 kb on + strand at 335.599 kb on + strand at 335.599 kb on + strand at 335.599 kb on + strand at 335.599 kb on + strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.600 kb on - strand at 335.659 kb on + strand, within LRK55_RS01575 at 335.659 kb on + strand, within LRK55_RS01575 at 335.659 kb on + strand, within LRK55_RS01575 at 335.659 kb on + strand, within LRK55_RS01575 at 335.660 kb on - strand, within LRK55_RS01575 at 335.660 kb on - strand, within LRK55_RS01575 at 335.660 kb on - strand, within LRK55_RS01575 at 335.660 kb on - strand, within LRK55_RS01575 at 335.660 kb on - strand, within LRK55_RS01575 at 335.660 kb on - strand, within LRK55_RS01575 at 335.725 kb on + strand, within LRK55_RS01575 at 335.725 kb on + strand, within LRK55_RS01575 at 335.725 kb on + strand, within LRK55_RS01575 at 335.725 kb on + strand, within LRK55_RS01575 at 335.725 kb on + strand, within LRK55_RS01575 at 335.725 kb on + strand, within LRK55_RS01575 at 335.725 kb on + strand, within LRK55_RS01575 at 335.725 kb on + strand, within LRK55_RS01575 at 335.726 kb on - strand, within LRK55_RS01575 at 335.726 kb on - strand, within LRK55_RS01575 at 335.726 kb on - strand, within LRK55_RS01575 at 335.726 kb on - strand, within LRK55_RS01575 at 335.728 kb on + strand, within LRK55_RS01575 at 335.728 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.767 kb on + strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.768 kb on - strand, within LRK55_RS01575 at 335.851 kb on + strand, within LRK55_RS01575 at 335.852 kb on - strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 336.112 kb on + strand at 336.112 kb on + strand at 336.112 kb on + strand at 336.113 kb on - strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.225 kb on + strand, within LRK55_RS01580 at 336.225 kb on + strand, within LRK55_RS01580 at 336.225 kb on + strand, within LRK55_RS01580 at 336.225 kb on + strand, within LRK55_RS01580 at 336.225 kb on + strand, within LRK55_RS01580 at 336.226 kb on - strand, within LRK55_RS01580 at 336.226 kb on - strand, within LRK55_RS01580 at 336.226 kb on - strand, within LRK55_RS01580 at 336.226 kb on - strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.434 kb on + strand, within LRK55_RS01580 at 336.444 kb on + strand, within LRK55_RS01580 at 336.444 kb on + strand, within LRK55_RS01580 at 336.445 kb on - strand, within LRK55_RS01580 at 336.445 kb on - strand, within LRK55_RS01580 at 336.445 kb on - strand, within LRK55_RS01580 at 336.445 kb on - strand, within LRK55_RS01580 at 336.559 kb on + strand, within LRK55_RS01580 at 336.560 kb on - strand, within LRK55_RS01580 at 336.560 kb on - strand, within LRK55_RS01580 at 336.560 kb on - strand, within LRK55_RS01580 at 336.560 kb on - strand, within LRK55_RS01580 at 336.601 kb on - strand, within LRK55_RS01580 at 336.601 kb on - strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.607 kb on - strand, within LRK55_RS01580 at 336.621 kb on + strand, within LRK55_RS01580 at 336.622 kb on - strand, within LRK55_RS01580 at 336.748 kb on + strand at 336.748 kb on + strand at 336.748 kb on + strand at 336.748 kb on + strand at 336.748 kb on + strand at 336.749 kb on - strand at 336.749 kb on - strand at 336.749 kb on - strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.790 kb on - strand at 336.790 kb on - strand at 336.790 kb on - strand at 336.790 kb on - strand at 336.790 kb on - strand at 336.836 kb on - strand at 336.836 kb on - strand at 336.836 kb on - strand at 336.916 kb on + strand at 336.916 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.5 remove 334,589 + LRK55_RS01565 0.24 +0.5 334,589 + LRK55_RS01565 0.24 +0.6 334,591 + LRK55_RS01565 0.25 +0.8 334,592 - LRK55_RS01565 0.25 -0.7 334,592 - LRK55_RS01565 0.25 -0.1 334,592 - LRK55_RS01565 0.25 -0.6 334,773 - LRK55_RS01565 0.52 +0.6 334,835 + LRK55_RS01565 0.61 +0.4 334,835 + LRK55_RS01565 0.61 -0.1 334,835 + LRK55_RS01565 0.61 -0.1 334,835 + LRK55_RS01565 0.61 -1.6 334,835 + LRK55_RS01565 0.61 -2.1 334,835 + LRK55_RS01565 0.61 +1.4 334,835 + LRK55_RS01565 0.61 -0.2 334,836 - LRK55_RS01565 0.61 -1.5 334,836 - LRK55_RS01565 0.61 +1.1 334,836 - LRK55_RS01565 0.61 -0.1 334,836 - LRK55_RS01565 0.61 -1.3 334,836 - LRK55_RS01565 0.61 +0.5 334,836 - LRK55_RS01565 0.61 -1.0 334,836 - LRK55_RS01565 0.61 +0.4 334,836 - LRK55_RS01565 0.61 -1.7 334,839 - LRK55_RS01565 0.62 -1.0 334,839 - LRK55_RS01565 0.62 +1.0 334,980 - LRK55_RS01565 0.83 -2.1 335,021 + LRK55_RS01565 0.89 -0.7 335,205 + LRK55_RS01570 0.27 -0.7 335,599 + -0.3 335,599 + -0.2 335,599 + -0.6 335,599 + -2.3 335,599 + -0.0 335,599 + -0.5 335,599 + -2.6 335,599 + +0.0 335,599 + -0.8 335,600 - +0.9 335,600 - -0.2 335,600 - -0.6 335,600 - +0.1 335,600 - +0.6 335,600 - +1.3 335,600 - +0.7 335,600 - -0.2 335,600 - +0.7 335,600 - +1.9 335,600 - -2.3 335,659 + LRK55_RS01575 0.17 +0.4 335,659 + LRK55_RS01575 0.17 +0.6 335,659 + LRK55_RS01575 0.17 +0.1 335,659 + LRK55_RS01575 0.17 -0.1 335,660 - LRK55_RS01575 0.17 +1.3 335,660 - LRK55_RS01575 0.17 +0.1 335,660 - LRK55_RS01575 0.17 -1.4 335,660 - LRK55_RS01575 0.17 -2.6 335,660 - LRK55_RS01575 0.17 -1.3 335,660 - LRK55_RS01575 0.17 +0.8 335,725 + LRK55_RS01575 0.30 -1.8 335,725 + LRK55_RS01575 0.30 -0.7 335,725 + LRK55_RS01575 0.30 -1.5 335,725 + LRK55_RS01575 0.30 +0.4 335,725 + LRK55_RS01575 0.30 -0.0 335,725 + LRK55_RS01575 0.30 -1.8 335,725 + LRK55_RS01575 0.30 -0.2 335,725 + LRK55_RS01575 0.30 -0.3 335,726 - LRK55_RS01575 0.30 +0.4 335,726 - LRK55_RS01575 0.30 -1.9 335,726 - LRK55_RS01575 0.30 -0.6 335,726 - LRK55_RS01575 0.30 -1.1 335,728 + LRK55_RS01575 0.31 -1.3 335,728 + LRK55_RS01575 0.31 -0.9 335,767 + LRK55_RS01575 0.38 -1.2 335,767 + LRK55_RS01575 0.38 -0.5 335,767 + LRK55_RS01575 0.38 -2.9 335,767 + LRK55_RS01575 0.38 -1.1 335,767 + LRK55_RS01575 0.38 -0.0 335,767 + LRK55_RS01575 0.38 -0.2 335,767 + LRK55_RS01575 0.38 +0.4 335,767 + LRK55_RS01575 0.38 -1.5 335,767 + LRK55_RS01575 0.38 -2.1 335,767 + LRK55_RS01575 0.38 -0.7 335,767 + LRK55_RS01575 0.38 -0.4 335,767 + LRK55_RS01575 0.38 -0.9 335,767 + LRK55_RS01575 0.38 -2.0 335,767 + LRK55_RS01575 0.38 -1.2 335,767 + LRK55_RS01575 0.38 -1.4 335,767 + LRK55_RS01575 0.38 -1.3 335,768 - LRK55_RS01575 0.39 -1.0 335,768 - LRK55_RS01575 0.39 -0.6 335,768 - LRK55_RS01575 0.39 -1.6 335,768 - LRK55_RS01575 0.39 -0.4 335,768 - LRK55_RS01575 0.39 +0.1 335,768 - LRK55_RS01575 0.39 -1.4 335,768 - LRK55_RS01575 0.39 -0.5 335,768 - LRK55_RS01575 0.39 -0.9 335,768 - LRK55_RS01575 0.39 -0.8 335,768 - LRK55_RS01575 0.39 -3.7 335,768 - LRK55_RS01575 0.39 -0.1 335,768 - LRK55_RS01575 0.39 -1.0 335,768 - LRK55_RS01575 0.39 -1.1 335,768 - LRK55_RS01575 0.39 -0.4 335,768 - LRK55_RS01575 0.39 -0.6 335,768 - LRK55_RS01575 0.39 +0.4 335,851 + LRK55_RS01575 0.55 +1.3 335,852 - LRK55_RS01575 0.56 -3.5 335,920 + LRK55_RS01575 0.69 -0.9 335,920 + LRK55_RS01575 0.69 -1.8 335,920 + LRK55_RS01575 0.69 -0.9 335,920 + LRK55_RS01575 0.69 -1.1 335,920 + LRK55_RS01575 0.69 -1.3 335,921 - LRK55_RS01575 0.69 -1.1 335,921 - LRK55_RS01575 0.69 -1.5 335,921 - LRK55_RS01575 0.69 -0.7 335,921 - LRK55_RS01575 0.69 -0.3 335,921 - LRK55_RS01575 0.69 -0.6 336,112 + -0.2 336,112 + +0.4 336,112 + +1.0 336,113 - -0.4 336,204 + -0.3 336,204 + +1.8 336,204 + +1.2 336,204 + -1.9 336,204 + -1.4 336,204 + -0.6 336,204 + -1.2 336,204 + -1.4 336,205 - +0.2 336,205 - +1.4 336,205 - +0.9 336,205 - -2.0 336,205 - -1.0 336,225 + LRK55_RS01580 0.10 -0.9 336,225 + LRK55_RS01580 0.10 -0.4 336,225 + LRK55_RS01580 0.10 +0.4 336,225 + LRK55_RS01580 0.10 +0.8 336,225 + LRK55_RS01580 0.10 -0.8 336,226 - LRK55_RS01580 0.10 -0.1 336,226 - LRK55_RS01580 0.10 -2.1 336,226 - LRK55_RS01580 0.10 +0.2 336,226 - LRK55_RS01580 0.10 +0.3 336,288 + LRK55_RS01580 0.21 +1.7 336,288 + LRK55_RS01580 0.21 -0.4 336,288 + LRK55_RS01580 0.21 +0.7 336,288 + LRK55_RS01580 0.21 -0.1 336,288 + LRK55_RS01580 0.21 -0.6 336,288 + LRK55_RS01580 0.21 -0.2 336,289 - LRK55_RS01580 0.22 -0.4 336,289 - LRK55_RS01580 0.22 +0.4 336,289 - LRK55_RS01580 0.22 -0.2 336,289 - LRK55_RS01580 0.22 +0.4 336,289 - LRK55_RS01580 0.22 -0.0 336,393 + LRK55_RS01580 0.40 +0.2 336,393 + LRK55_RS01580 0.40 +1.2 336,393 + LRK55_RS01580 0.40 -0.3 336,393 + LRK55_RS01580 0.40 -0.1 336,393 + LRK55_RS01580 0.40 +2.0 336,393 + LRK55_RS01580 0.40 +0.7 336,394 - LRK55_RS01580 0.40 +0.7 336,394 - LRK55_RS01580 0.40 -1.3 336,394 - LRK55_RS01580 0.40 -0.1 336,394 - LRK55_RS01580 0.40 +1.0 336,394 - LRK55_RS01580 0.40 +0.4 336,394 - LRK55_RS01580 0.40 +0.7 336,434 + LRK55_RS01580 0.47 +0.7 336,444 + LRK55_RS01580 0.49 +0.2 336,444 + LRK55_RS01580 0.49 -1.7 336,445 - LRK55_RS01580 0.49 +1.0 336,445 - LRK55_RS01580 0.49 +0.3 336,445 - LRK55_RS01580 0.49 -0.1 336,445 - LRK55_RS01580 0.49 -1.4 336,559 + LRK55_RS01580 0.69 -1.0 336,560 - LRK55_RS01580 0.69 +0.6 336,560 - LRK55_RS01580 0.69 -0.1 336,560 - LRK55_RS01580 0.69 -0.6 336,560 - LRK55_RS01580 0.69 -0.0 336,601 - LRK55_RS01580 0.77 -0.7 336,601 - LRK55_RS01580 0.77 -1.1 336,606 + LRK55_RS01580 0.77 +0.0 336,606 + LRK55_RS01580 0.77 +0.2 336,606 + LRK55_RS01580 0.77 -1.6 336,606 + LRK55_RS01580 0.77 -1.3 336,606 + LRK55_RS01580 0.77 +0.4 336,606 + LRK55_RS01580 0.77 -1.2 336,607 - LRK55_RS01580 0.78 -0.6 336,621 + LRK55_RS01580 0.80 +0.1 336,622 - LRK55_RS01580 0.80 -0.9 336,748 + -0.7 336,748 + -0.5 336,748 + +1.4 336,748 + +0.2 336,748 + -0.3 336,749 - +0.9 336,749 - +0.3 336,749 - -0.1 336,789 + +0.8 336,789 + -0.7 336,789 + +0.3 336,789 + +0.3 336,789 + +1.2 336,789 + +0.5 336,789 + +0.7 336,789 + +0.3 336,790 - -2.4 336,790 - -1.3 336,790 - -1.1 336,790 - -0.3 336,790 - +1.4 336,836 - +0.7 336,836 - -0.6 336,836 - -0.3 336,916 + -0.7 336,916 + +1.4
Or see this region's nucleotide sequence