Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS14785

Experiment: R2A_PIPES pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.5
3,253,178	+		LRK55_RS14780	0.16	+0.3
3,253,179	-		LRK55_RS14780	0.16	+0.1
3,253,179	-		LRK55_RS14780	0.16	-0.1
3,253,179	-		LRK55_RS14780	0.16	+0.7
3,253,179	-		LRK55_RS14780	0.16	-0.7
3,253,281	+		LRK55_RS14780	0.27	-1.7
3,253,364	+		LRK55_RS14780	0.36	-2.3
3,253,364	+		LRK55_RS14780	0.36	+0.3
3,253,364	+		LRK55_RS14780	0.36	-0.9
3,253,364	+		LRK55_RS14780	0.36	+0.1
3,253,364	+		LRK55_RS14780	0.36	+0.3
3,253,364	+		LRK55_RS14780	0.36	-0.7
3,253,365	-		LRK55_RS14780	0.36	+0.6
3,253,365	-		LRK55_RS14780	0.36	-0.7
3,253,365	-		LRK55_RS14780	0.36	-0.3
3,253,365	-		LRK55_RS14780	0.36	+0.5
3,253,365	-		LRK55_RS14780	0.36	+1.4
3,253,365	-		LRK55_RS14780	0.36	-0.0
3,253,365	-		LRK55_RS14780	0.36	-1.7
3,253,365	-		LRK55_RS14780	0.36	+0.2
3,253,365	-		LRK55_RS14780	0.36	+0.1
3,253,365	-		LRK55_RS14780	0.36	+0.1
3,253,365	-		LRK55_RS14780	0.36	+0.1
3,253,365	-		LRK55_RS14780	0.36	+0.4
3,253,365	-		LRK55_RS14780	0.36	-0.8
3,253,470	-		LRK55_RS14780	0.47	+0.8
3,253,470	-		LRK55_RS14780	0.47	+0.2
3,253,591	+		LRK55_RS14780	0.60	+1.3
3,253,591	+		LRK55_RS14780	0.60	-0.7
3,253,591	+		LRK55_RS14780	0.60	+0.1
3,253,591	+		LRK55_RS14780	0.60	+0.5
3,253,592	-		LRK55_RS14780	0.60	-1.5
3,253,592	-		LRK55_RS14780	0.60	+0.5
3,253,592	-		LRK55_RS14780	0.60	+2.0
3,253,592	-		LRK55_RS14780	0.60	-0.2
3,253,623	-		LRK55_RS14780	0.63	-0.1
3,253,634	+		LRK55_RS14780	0.65	-0.5
3,253,634	+		LRK55_RS14780	0.65	-1.4
3,253,634	+		LRK55_RS14780	0.65	-0.1
3,253,634	+		LRK55_RS14780	0.65	+0.1
3,253,635	-		LRK55_RS14780	0.65	+0.2
3,253,635	-		LRK55_RS14780	0.65	+0.9
3,253,635	-		LRK55_RS14780	0.65	-0.3
3,253,635	-		LRK55_RS14780	0.65	+0.4
3,253,827	+		LRK55_RS14780	0.85	-0.1
3,253,829	+		LRK55_RS14780	0.85	+0.7
3,253,829	+		LRK55_RS14780	0.85	+0.0
3,253,829	+		LRK55_RS14780	0.85	+0.7
3,253,829	+		LRK55_RS14780	0.85	+1.0
3,253,829	+		LRK55_RS14780	0.85	+0.6
3,253,829	+		LRK55_RS14780	0.85	-0.5
3,253,829	+		LRK55_RS14780	0.85	+0.7
3,253,829	+		LRK55_RS14780	0.85	-0.1
3,253,829	+		LRK55_RS14780	0.85	-0.5
3,253,829	+		LRK55_RS14780	0.85	+0.5
3,253,829	+		LRK55_RS14780	0.85	+0.4
3,253,829	+		LRK55_RS14780	0.85	+0.3
3,253,829	+		LRK55_RS14780	0.85	+0.8
3,253,829	+		LRK55_RS14780	0.85	-1.4
3,253,829	+		LRK55_RS14780	0.85	+1.0
3,253,829	+		LRK55_RS14780	0.85	-0.7
3,253,829	+		LRK55_RS14780	0.85	+0.7
3,253,829	+		LRK55_RS14780	0.85	-2.1
3,253,829	+		LRK55_RS14780	0.85	-0.4
3,253,830	-		LRK55_RS14780	0.85	+1.8
3,253,830	-		LRK55_RS14780	0.85	-0.2
3,253,830	-		LRK55_RS14780	0.85	+1.3
3,253,830	-		LRK55_RS14780	0.85	+1.6
3,253,830	-		LRK55_RS14780	0.85	+1.0
3,253,830	-		LRK55_RS14780	0.85	-0.1
3,253,830	-		LRK55_RS14780	0.85	+0.8
3,253,830	-		LRK55_RS14780	0.85	-1.1
3,253,830	-		LRK55_RS14780	0.85	+0.4
3,253,830	-		LRK55_RS14780	0.85	-0.6
3,253,830	-		LRK55_RS14780	0.85	-0.5
3,253,830	-		LRK55_RS14780	0.85	-0.2
3,253,830	-		LRK55_RS14780	0.85	-0.6
3,253,830	-		LRK55_RS14780	0.85	+0.1
3,253,830	-		LRK55_RS14780	0.85	+0.3
3,253,830	-		LRK55_RS14780	0.85	-2.1
3,253,830	-		LRK55_RS14780	0.85	-0.4
3,253,830	-		LRK55_RS14780	0.85	+0.7
3,253,830	-		LRK55_RS14780	0.85	+0.4
3,253,830	-		LRK55_RS14780	0.85	+1.1
3,253,830	-		LRK55_RS14780	0.85	+0.0
3,253,830	-		LRK55_RS14780	0.85	-0.4
3,253,830	-		LRK55_RS14780	0.85	+0.4
3,253,830	-		LRK55_RS14780	0.85	-0.3
3,253,830	-		LRK55_RS14780	0.85	-0.2
3,253,844	+		LRK55_RS14780	0.87	-0.6
3,253,844	+		LRK55_RS14780	0.87	+0.3
3,253,844	+		LRK55_RS14780	0.87	-0.4
3,253,844	+		LRK55_RS14780	0.87	-0.1
3,253,844	+		LRK55_RS14780	0.87	+0.4
3,253,844	+		LRK55_RS14780	0.87	-0.5
3,253,844	+		LRK55_RS14780	0.87	-2.1
3,253,844	+		LRK55_RS14780	0.87	-0.2
3,253,844	+		LRK55_RS14780	0.87	+0.5
3,253,844	+		LRK55_RS14780	0.87	+0.7
3,253,844	+		LRK55_RS14780	0.87	-0.3
3,253,844	+		LRK55_RS14780	0.87	+0.4
3,253,845	-		LRK55_RS14780	0.87	-0.0
3,253,845	-		LRK55_RS14780	0.87	+2.5
3,253,845	-		LRK55_RS14780	0.87	-0.9
3,253,845	-		LRK55_RS14780	0.87	-0.1
3,253,845	-		LRK55_RS14780	0.87	-0.1
3,253,897	+				-0.2
3,253,898	-				-0.7
3,254,006	+				-2.8
3,254,023	+				+0.5
3,254,023	+				-1.2
3,254,023	+				-0.2
3,254,169	-				-1.2
3,254,169	-				-0.6
3,254,169	-				-0.7
3,254,267	+				-0.9
3,254,267	+				-0.1
3,254,267	+				-1.6
3,254,267	+				-1.1
3,254,268	-				-2.0
3,254,268	-				-0.3
3,254,297	+				+0.0
3,254,297	+				+2.0
3,254,298	-				-0.3
3,254,319	-		LRK55_RS14785	0.11	-0.0
3,254,417	+		LRK55_RS14785	0.18	-0.3
3,254,417	+		LRK55_RS14785	0.18	-0.8
3,254,918	+		LRK55_RS14785	0.54	-0.9
3,254,918	+		LRK55_RS14785	0.54	-0.3
3,254,919	-		LRK55_RS14785	0.54	-0.1
3,254,919	-		LRK55_RS14785	0.54	-0.0
3,254,919	-		LRK55_RS14785	0.54	-1.6
3,254,937	-		LRK55_RS14785	0.56	-2.8
3,254,969	+		LRK55_RS14785	0.58	-2.1
3,254,969	+		LRK55_RS14785	0.58	+0.5
3,254,969	+		LRK55_RS14785	0.58	+0.0
3,254,970	-		LRK55_RS14785	0.58	-1.1
3,254,970	-		LRK55_RS14785	0.58	-2.9
3,255,053	+		LRK55_RS14785	0.64	-1.8
3,255,054	-		LRK55_RS14785	0.64	-1.9
3,255,054	-		LRK55_RS14785	0.64	-1.8
3,255,054	-		LRK55_RS14785	0.64	-0.6
3,255,054	-		LRK55_RS14785	0.64	+0.1
3,255,054	-		LRK55_RS14785	0.64	-1.2
3,255,092	+		LRK55_RS14785	0.67	-1.2
3,255,093	-		LRK55_RS14785	0.67	+0.5
3,255,093	-		LRK55_RS14785	0.67	-1.4
3,255,260	+		LRK55_RS14785	0.79	-0.0
3,255,260	+		LRK55_RS14785	0.79	-1.1
3,255,260	+		LRK55_RS14785	0.79	-2.0
3,255,261	-		LRK55_RS14785	0.79	-0.3
3,255,261	-		LRK55_RS14785	0.79	-0.3
3,255,527	+				+0.0
3,255,527	+				+0.4
3,255,527	+				-1.1
3,255,527	+				-2.4
3,255,527	+				-2.6
3,255,527	+				-0.7
3,255,527	+				-1.9
3,255,527	+				-1.0
3,255,528	-				-2.2
3,255,528	-				+0.1
3,255,528	-				-2.0
3,255,528	-				-1.9
3,255,528	-				+0.8
3,255,528	-				+0.0
3,255,528	-				-1.1
3,255,528	-				-1.1
3,255,528	-				-2.8
3,255,528	-				-0.1
3,255,528	-				-1.8
3,255,659	+				-2.9
3,255,659	+				+0.6
3,255,660	-				-0.6
3,255,747	+		LRK55_RS14790	0.29	+0.1
3,255,748	-		LRK55_RS14790	0.29	-0.2
3,255,807	-		LRK55_RS14790	0.42	-0.3
3,255,969	+		LRK55_RS14790	0.77	+0.1
3,255,969	+		LRK55_RS14790	0.77	-0.1
3,255,970	-		LRK55_RS14790	0.77	-1.5
3,255,975	+		LRK55_RS14790	0.78	+0.2
3,255,975	+		LRK55_RS14790	0.78	+0.5
3,255,975	+		LRK55_RS14790	0.78	-1.3
3,255,975	+		LRK55_RS14790	0.78	+1.1
3,255,975	+		LRK55_RS14790	0.78	-1.3
3,255,975	+		LRK55_RS14790	0.78	-0.1
3,255,975	+		LRK55_RS14790	0.78	+0.6
3,255,975	+		LRK55_RS14790	0.78	-0.7
3,255,975	+		LRK55_RS14790	0.78	-1.9
3,255,975	+		LRK55_RS14790	0.78	+0.1
3,255,975	+		LRK55_RS14790	0.78	-2.4
3,255,975	+		LRK55_RS14790	0.78	-0.7
3,255,975	+		LRK55_RS14790	0.78	-1.3
3,255,976	-		LRK55_RS14790	0.78	-0.3
3,255,976	-		LRK55_RS14790	0.78	-1.0
3,255,976	-		LRK55_RS14790	0.78	-1.7
3,255,976	-		LRK55_RS14790	0.78	-1.2
3,255,976	-		LRK55_RS14790	0.78	+0.7
3,255,976	-		LRK55_RS14790	0.78	+0.2
3,255,976	-		LRK55_RS14790	0.78	-1.7
3,255,976	-		LRK55_RS14790	0.78	-0.8
3,255,976	-		LRK55_RS14790	0.78	-1.2
3,255,976	-		LRK55_RS14790	0.78	+0.4
3,255,976	-		LRK55_RS14790	0.78	-0.5
3,255,976	-		LRK55_RS14790	0.78	+0.1
3,255,976	-		LRK55_RS14790	0.78	-0.6
3,255,976	-		LRK55_RS14790	0.78	-0.5
3,255,976	-		LRK55_RS14790	0.78	+1.6
3,255,976	-		LRK55_RS14790	0.78	+1.3
3,256,019	-		LRK55_RS14790	0.88	+0.9
3,256,125	+				-0.8
3,256,126	-				+1.0
3,256,182	+				+1.7
3,256,182	+				-0.0
3,256,182	+				+0.3
3,256,182	+				+0.4
3,256,182	+				-0.7
3,256,183	-				+0.1
3,256,183	-				-2.4
3,256,183	-				+0.4
3,256,183	-				-2.1
3,256,183	-				-0.5
3,256,183	-				-0.3
3,256,333	-		LRK55_RS14795	0.26	-0.2
3,256,437	+		LRK55_RS14795	0.44	-1.4
3,256,437	+		LRK55_RS14795	0.44	-0.1
3,256,437	+		LRK55_RS14795	0.44	-0.3
3,256,437	+		LRK55_RS14795	0.44	-0.2
3,256,438	-		LRK55_RS14795	0.45	-2.2
3,256,438	-		LRK55_RS14795	0.45	-0.8
3,256,438	-		LRK55_RS14795	0.45	+0.5
3,256,479	+		LRK55_RS14795	0.52	-1.1
3,256,479	+		LRK55_RS14795	0.52	+0.3
3,256,480	-		LRK55_RS14795	0.52	-1.5
3,256,480	-		LRK55_RS14795	0.52	-0.7
3,256,480	-		LRK55_RS14795	0.52	-0.2
3,256,480	-		LRK55_RS14795	0.52	-0.9