Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS06380

Experiment: R2A_PIPES pH 4.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.5
1,377,641	+		LRK55_RS06375	0.53	+0.8
1,377,752	+		LRK55_RS06375	0.65	+0.8
1,377,752	+		LRK55_RS06375	0.65	-3.5
1,377,752	+		LRK55_RS06375	0.65	+0.1
1,377,753	-		LRK55_RS06375	0.65	-0.0
1,377,753	-		LRK55_RS06375	0.65	+1.0
1,377,753	-		LRK55_RS06375	0.65	-1.1
1,377,829	+		LRK55_RS06375	0.74	-0.8
1,377,829	+		LRK55_RS06375	0.74	+0.4
1,377,830	-		LRK55_RS06375	0.74	-0.3
1,377,844	+		LRK55_RS06375	0.75	+0.3
1,377,844	+		LRK55_RS06375	0.75	-0.1
1,377,844	+		LRK55_RS06375	0.75	-0.4
1,377,845	-		LRK55_RS06375	0.75	+0.3
1,377,845	-		LRK55_RS06375	0.75	-0.8
1,377,921	+		LRK55_RS06375	0.84	+1.2
1,377,921	+		LRK55_RS06375	0.84	+0.5
1,377,922	-		LRK55_RS06375	0.84	-1.0
1,377,986	+				+1.4
1,377,986	+				-0.4
1,377,986	+				+0.7
1,377,986	+				+0.2
1,377,986	+				+0.4
1,377,987	-				-0.5
1,377,987	-				-0.2
1,377,987	-				+0.4
1,378,134	+				-0.4
1,378,134	+				+1.1
1,378,193	+				+0.2
1,378,194	-				+0.8
1,378,371	+		LRK55_RS06380	0.27	+0.0
1,378,371	+		LRK55_RS06380	0.27	-0.7
1,378,371	+		LRK55_RS06380	0.27	+0.1
1,378,371	+		LRK55_RS06380	0.27	+0.2
1,378,372	-		LRK55_RS06380	0.27	-0.0
1,378,452	+		LRK55_RS06380	0.46	+0.3
1,378,453	-		LRK55_RS06380	0.46	+0.7
1,378,467	+		LRK55_RS06380	0.50	+0.3
1,378,468	-		LRK55_RS06380	0.50	+0.4
1,378,488	+		LRK55_RS06380	0.55	+0.1
1,378,488	+		LRK55_RS06380	0.55	+0.9
1,378,488	+		LRK55_RS06380	0.55	+0.7
1,378,488	+		LRK55_RS06380	0.55	+0.8
1,378,488	+		LRK55_RS06380	0.55	+1.2
1,378,488	+		LRK55_RS06380	0.55	+0.0
1,378,488	+		LRK55_RS06380	0.55	+0.5
1,378,488	+		LRK55_RS06380	0.55	+0.5
1,378,488	+		LRK55_RS06380	0.55	-0.9
1,378,488	+		LRK55_RS06380	0.55	+0.0
1,378,488	+		LRK55_RS06380	0.55	+0.4
1,378,488	+		LRK55_RS06380	0.55	+0.6
1,378,489	-		LRK55_RS06380	0.55	-0.5
1,378,489	-		LRK55_RS06380	0.55	-0.2
1,378,489	-		LRK55_RS06380	0.55	+0.9
1,378,489	-		LRK55_RS06380	0.55	+0.8
1,378,489	-		LRK55_RS06380	0.55	+0.2
1,378,489	-		LRK55_RS06380	0.55	+0.3
1,378,489	-		LRK55_RS06380	0.55	-0.8
1,378,489	-		LRK55_RS06380	0.55	+0.5
1,378,489	-		LRK55_RS06380	0.55	+1.2
1,378,489	-		LRK55_RS06380	0.55	+0.5
1,378,491	+		LRK55_RS06380	0.55	+1.9
1,378,530	+		LRK55_RS06380	0.65	+1.1
1,378,533	+		LRK55_RS06380	0.65	+0.5
1,378,533	+		LRK55_RS06380	0.65	+1.1
1,378,533	+		LRK55_RS06380	0.65	-0.1
1,378,533	+		LRK55_RS06380	0.65	-1.2
1,378,545	+		LRK55_RS06380	0.68	+0.2
1,378,545	+		LRK55_RS06380	0.68	+0.9
1,378,545	+		LRK55_RS06380	0.68	+0.6
1,378,545	+		LRK55_RS06380	0.68	+0.9
1,378,545	+		LRK55_RS06380	0.68	+0.8
1,378,545	+		LRK55_RS06380	0.68	+1.0
1,378,545	+		LRK55_RS06380	0.68	+0.4
1,378,545	+		LRK55_RS06380	0.68	+0.2
1,378,545	+		LRK55_RS06380	0.68	-0.8
1,378,545	+		LRK55_RS06380	0.68	+0.1
1,378,546	-		LRK55_RS06380	0.69	-0.5
1,378,546	-		LRK55_RS06380	0.69	+0.4
1,378,546	-		LRK55_RS06380	0.69	-0.6
1,378,546	-		LRK55_RS06380	0.69	+1.2
1,378,546	-		LRK55_RS06380	0.69	-0.3
1,378,546	-		LRK55_RS06380	0.69	+0.3
1,378,546	-		LRK55_RS06380	0.69	-3.1
1,378,546	-		LRK55_RS06380	0.69	-0.1
1,378,546	-		LRK55_RS06380	0.69	+0.9
1,378,546	-		LRK55_RS06380	0.69	-0.3
1,378,546	-		LRK55_RS06380	0.69	-0.9
1,378,546	-		LRK55_RS06380	0.69	+0.8
1,378,560	+		LRK55_RS06380	0.72	+0.7
1,378,569	+		LRK55_RS06380	0.74	+0.6
1,378,623	+		LRK55_RS06380	0.87	+0.8
1,378,623	+		LRK55_RS06380	0.87	+0.6
1,378,624	-		LRK55_RS06380	0.87	+0.8
1,378,624	-		LRK55_RS06380	0.87	-0.1
1,378,624	-		LRK55_RS06380	0.87	-1.2
1,378,624	-		LRK55_RS06380	0.87	-0.2
1,378,624	-		LRK55_RS06380	0.87	-0.1
1,378,663	-				+1.3
1,378,663	-				+0.5
1,378,663	-				+1.5
1,378,663	-				+0.5
1,378,663	-				+0.2
1,378,781	+				+0.1
1,378,781	+				-0.0
1,378,781	+				-0.3
1,378,781	+				-0.4
1,378,782	-				+2.3
1,378,782	-				-0.6
1,378,782	-				+0.4
1,378,782	-				-0.1
1,378,782	-				+0.6
1,378,782	-				+0.2
1,378,783	+				-1.0
1,378,783	+				+0.6
1,378,783	+				+0.2
1,378,783	+				+0.5
1,378,783	+				-0.4
1,378,783	+				+0.6
1,378,784	-				+0.9
1,378,784	-				+0.7
1,378,784	-				+0.4
1,378,817	+				+0.1
1,378,817	+				+0.8
1,378,817	+				+0.3
1,378,817	+				+0.7
1,378,817	+				+2.1
1,378,817	+				+0.0
1,378,817	+				+0.6
1,378,817	+				+0.9
1,378,818	-				-0.1
1,378,818	-				+0.4
1,378,818	-				+1.1
1,378,818	-				+1.1
1,378,818	-				+0.6
1,378,818	-				-0.4
1,378,818	-				+1.1
1,378,818	-				+1.3
1,378,818	-				+1.1
1,378,818	-				-0.3
1,378,818	-				+0.5
1,378,818	-				+0.2
1,378,851	+				+0.1
1,378,851	+				+0.8
1,378,851	+				-0.2
1,378,851	+				+0.1
1,378,851	+				+0.2
1,378,851	+				+0.4
1,378,852	-				+0.3
1,378,852	-				+0.7
1,378,852	-				+0.4
1,378,852	-				+1.1
1,378,852	-				+0.6
1,378,852	-				+1.0
1,378,896	+				+0.6
1,378,896	+				+1.2
1,378,896	+				+0.4
1,378,992	+				+0.7
1,378,992	+				-0.8
1,379,007	+				+1.1
1,379,007	+				+2.1
1,379,007	+				+0.3
1,379,007	+				-1.2
1,379,007	+				+0.9
1,379,007	+				+0.9
1,379,007	+				+0.7
1,379,007	+				+0.5
1,379,008	-				+0.7
1,379,008	-				+0.8
1,379,008	-				-0.3
1,379,008	-				+0.5
1,379,008	-				+0.3
1,379,121	+		LRK55_RS06385	0.14	-0.1
1,379,121	+		LRK55_RS06385	0.14	+0.3
1,379,121	+		LRK55_RS06385	0.14	+1.7
1,379,122	-		LRK55_RS06385	0.14	+0.3
1,379,122	-		LRK55_RS06385	0.14	+0.6
1,379,122	-		LRK55_RS06385	0.14	+0.4
1,379,122	-		LRK55_RS06385	0.14	+0.3
1,379,441	+		LRK55_RS06385	0.29	-0.3
1,379,541	+		LRK55_RS06385	0.34	+0.3
1,379,542	-		LRK55_RS06385	0.34	+0.1
1,379,542	-		LRK55_RS06385	0.34	-0.5