Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18305

Experiment: R2A_PIPES pH 4.25

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.25
3,965,729	+		LRK55_RS18295	0.56	-1.3
3,965,729	+		LRK55_RS18295	0.56	-0.2
3,965,729	+		LRK55_RS18295	0.56	-3.8
3,965,729	+		LRK55_RS18295	0.56	-0.8
3,965,729	+		LRK55_RS18295	0.56	-1.7
3,965,729	+		LRK55_RS18295	0.56	+0.9
3,965,730	-		LRK55_RS18295	0.56	+1.6
3,965,730	-		LRK55_RS18295	0.56	-2.7
3,965,730	-		LRK55_RS18295	0.56	-1.6
3,965,730	-		LRK55_RS18295	0.56	+1.9
3,965,730	-		LRK55_RS18295	0.56	-0.3
3,965,730	-		LRK55_RS18295	0.56	+1.2
3,965,730	-		LRK55_RS18295	0.56	-0.0
3,965,730	-		LRK55_RS18295	0.56	+0.5
3,965,762	+		LRK55_RS18295	0.60	-0.4
3,965,762	+		LRK55_RS18295	0.60	-0.1
3,965,762	+		LRK55_RS18295	0.60	+0.0
3,965,763	-		LRK55_RS18295	0.60	-0.2
3,965,789	+		LRK55_RS18295	0.63	-3.9
3,965,789	+		LRK55_RS18295	0.63	-1.9
3,965,789	+		LRK55_RS18295	0.63	+0.9
3,965,789	+		LRK55_RS18295	0.63	-0.7
3,965,790	-		LRK55_RS18295	0.63	+1.6
3,965,790	-		LRK55_RS18295	0.63	+1.3
3,965,790	-		LRK55_RS18295	0.63	+2.1
3,965,790	-		LRK55_RS18295	0.63	-2.5
3,965,790	-		LRK55_RS18295	0.63	-0.9
3,965,841	-		LRK55_RS18295	0.69	-2.1
3,965,880	+		LRK55_RS18295	0.74	+1.0
3,965,880	+		LRK55_RS18295	0.74	+0.3
3,965,880	+		LRK55_RS18295	0.74	-1.1
3,965,880	+		LRK55_RS18295	0.74	-1.6
3,965,880	+		LRK55_RS18295	0.74	+1.0
3,965,880	+		LRK55_RS18295	0.74	-0.5
3,965,880	+		LRK55_RS18295	0.74	+0.2
3,965,880	+		LRK55_RS18295	0.74	-2.4
3,965,881	-		LRK55_RS18295	0.74	-0.3
3,965,881	-		LRK55_RS18295	0.74	-0.1
3,965,881	-		LRK55_RS18295	0.74	+0.1
3,965,881	-		LRK55_RS18295	0.74	-0.7
3,965,907	+		LRK55_RS18295	0.77	-0.9
3,965,907	+		LRK55_RS18295	0.77	-0.7
3,965,907	+		LRK55_RS18295	0.77	-1.3
3,965,907	+		LRK55_RS18295	0.77	-3.0
3,965,907	+		LRK55_RS18295	0.77	-1.2
3,965,907	+		LRK55_RS18295	0.77	+0.1
3,965,908	-		LRK55_RS18295	0.77	+2.6
3,965,908	-		LRK55_RS18295	0.77	-0.7
3,965,908	-		LRK55_RS18295	0.77	+1.9
3,965,908	-		LRK55_RS18295	0.77	+3.5
3,965,970	+		LRK55_RS18295	0.84	-2.0
3,965,970	+		LRK55_RS18295	0.84	-0.2
3,965,970	+		LRK55_RS18295	0.84	-0.2
3,965,970	+		LRK55_RS18295	0.84	-0.3
3,965,970	+		LRK55_RS18295	0.84	-0.1
3,965,970	+		LRK55_RS18295	0.84	+1.3
3,965,970	+		LRK55_RS18295	0.84	-4.3
3,965,970	+		LRK55_RS18295	0.84	-0.5
3,965,970	+		LRK55_RS18295	0.84	-0.3
3,965,970	+		LRK55_RS18295	0.84	-0.2
3,965,970	+		LRK55_RS18295	0.84	-1.9
3,965,970	+		LRK55_RS18295	0.84	+1.0
3,965,970	+		LRK55_RS18295	0.84	-0.2
3,965,970	+		LRK55_RS18295	0.84	+2.2
3,965,970	+		LRK55_RS18295	0.84	+0.9
3,965,970	+		LRK55_RS18295	0.84	+0.6
3,965,970	+		LRK55_RS18295	0.84	-0.4
3,965,970	+		LRK55_RS18295	0.84	+1.3
3,965,970	+		LRK55_RS18295	0.84	-1.1
3,965,970	+		LRK55_RS18295	0.84	+0.9
3,965,970	+		LRK55_RS18295	0.84	+0.4
3,965,971	-		LRK55_RS18295	0.84	-0.6
3,965,971	-		LRK55_RS18295	0.84	+0.6
3,965,971	-		LRK55_RS18295	0.84	+1.9
3,965,971	-		LRK55_RS18295	0.84	+1.0
3,965,971	-		LRK55_RS18295	0.84	-0.4
3,965,971	-		LRK55_RS18295	0.84	+1.0
3,965,971	-		LRK55_RS18295	0.84	-0.1
3,965,971	-		LRK55_RS18295	0.84	-1.5
3,965,971	-		LRK55_RS18295	0.84	+0.5
3,965,971	-		LRK55_RS18295	0.84	+1.2
3,965,971	-		LRK55_RS18295	0.84	-0.4
3,965,971	-		LRK55_RS18295	0.84	-2.2
3,965,971	-		LRK55_RS18295	0.84	-0.9
3,965,971	-		LRK55_RS18295	0.84	+0.2
3,965,971	-		LRK55_RS18295	0.84	-0.0
3,965,971	-		LRK55_RS18295	0.84	+2.3
3,965,971	-		LRK55_RS18295	0.84	-1.4
3,965,971	-		LRK55_RS18295	0.84	-0.7
3,965,971	-		LRK55_RS18295	0.84	-2.8
3,965,971	-		LRK55_RS18295	0.84	-0.7
3,965,971	-		LRK55_RS18295	0.84	-1.0
3,966,100	-				-0.5
3,966,115	+				+1.4
3,966,158	-				-0.1
3,966,166	+				+1.9
3,966,175	-				-0.5
3,966,214	+				-1.3
3,966,214	+				-0.6
3,966,214	+				-0.3
3,966,214	+				-1.9
3,966,214	+				-0.8
3,966,214	+				-0.3
3,966,215	-				-0.5
3,966,215	-				+2.4
3,966,215	-				-3.1
3,966,215	-				-0.6
3,966,215	-				+0.7
3,966,215	-				-2.9
3,966,215	-				+1.5
3,966,215	-				-0.1
3,966,224	+		LRK55_RS18300	0.13	-0.4
3,966,225	-		LRK55_RS18300	0.13	-2.0
3,966,297	+		LRK55_RS18300	0.38	-2.1
3,966,298	-		LRK55_RS18300	0.39	+2.0
3,966,298	-		LRK55_RS18300	0.39	-0.9
3,966,309	+		LRK55_RS18300	0.42	+1.0
3,966,309	+		LRK55_RS18300	0.42	+1.0
3,966,310	-		LRK55_RS18300	0.43	-1.4
3,966,310	-		LRK55_RS18300	0.43	+0.8
3,966,310	-		LRK55_RS18300	0.43	+0.7
3,966,310	-		LRK55_RS18300	0.43	+0.1
3,966,311	+		LRK55_RS18300	0.43	+0.7
3,966,311	+		LRK55_RS18300	0.43	+0.5
3,966,409	+		LRK55_RS18300	0.77	-0.6
3,966,409	+		LRK55_RS18300	0.77	-1.3
3,966,409	+		LRK55_RS18300	0.77	+0.3
3,966,409	+		LRK55_RS18300	0.77	-0.7
3,966,410	-		LRK55_RS18300	0.77	-0.9
3,966,506	+				-0.8
3,966,506	+				-3.5
3,966,506	+				-1.6
3,966,507	-				+1.3
3,966,507	-				-1.6
3,966,507	-				+2.1
3,966,507	-				-2.2
3,966,507	-				-2.5
3,966,522	+				+0.1
3,966,523	-				-0.7
3,966,573	+				-3.2
3,966,573	+				+1.4
3,966,573	+				-1.1
3,966,574	-				-0.2
3,966,574	-				+0.0
3,966,574	-				+0.5
3,966,590	+				+1.0
3,966,590	+				-1.7
3,966,591	-				+0.2
3,966,591	-				-1.7
3,966,591	-				-0.1
3,966,591	-				-0.7
3,966,621	+				-0.4
3,966,621	+				-2.3
3,966,621	+				-3.9
3,966,621	+				+1.2
3,966,621	+				+0.8
3,966,622	-				-1.9
3,966,622	-				+1.2
3,966,623	+				-3.4
3,966,623	+				+0.8
3,966,623	+				-0.2
3,966,623	+				+1.0
3,966,623	+				-0.1
3,966,623	+				-3.0
3,966,623	+				-0.4
3,966,623	+				-0.3
3,966,623	+				+0.5
3,966,623	+				-2.0
3,966,623	+				-0.9
3,966,623	+				+1.6
3,966,623	+				+1.4
3,966,623	+				-0.9
3,966,623	+				+0.1
3,966,623	+				-1.4
3,966,623	+				+2.8
3,966,624	-				-0.8
3,966,624	-				+0.2
3,966,624	-				+0.7
3,966,624	-				-1.7
3,966,624	-				+2.3
3,966,624	-				-1.1
3,966,693	+				-1.3
3,966,693	+				-2.0
3,966,693	+				-2.9
3,966,693	+				+0.8
3,966,693	+				+1.1
3,966,693	+				-0.1
3,966,693	+				-0.1
3,966,693	+				-0.6
3,966,693	+				-0.5
3,966,693	+				-0.2
3,966,693	+				+0.0
3,966,693	+				+0.4
3,966,693	+				+0.9
3,966,694	-				-0.5
3,966,694	-				+0.8
3,966,694	-				-1.1
3,966,694	-				-3.3
3,966,694	-				+1.2
3,966,694	-				-1.1
3,966,694	-				+1.4
3,966,774	+		LRK55_RS18305	0.32	+1.6
3,966,774	+		LRK55_RS18305	0.32	-1.5
3,966,774	+		LRK55_RS18305	0.32	-0.8
3,966,774	+		LRK55_RS18305	0.32	+0.3
3,966,774	+		LRK55_RS18305	0.32	+0.2
3,966,774	+		LRK55_RS18305	0.32	+0.1
3,966,775	-		LRK55_RS18305	0.33	+0.5
3,966,775	-		LRK55_RS18305	0.33	+0.1
3,966,775	-		LRK55_RS18305	0.33	-1.8
3,966,775	-		LRK55_RS18305	0.33	-2.2
3,966,775	-		LRK55_RS18305	0.33	+2.0
3,966,775	-		LRK55_RS18305	0.33	-2.1
3,966,775	-		LRK55_RS18305	0.33	-0.4
3,966,775	-		LRK55_RS18305	0.33	-1.6
3,966,776	+		LRK55_RS18305	0.33	-2.7
3,966,776	+		LRK55_RS18305	0.33	-1.7
3,966,776	+		LRK55_RS18305	0.33	-1.7
3,966,776	+		LRK55_RS18305	0.33	+0.7
3,966,776	+		LRK55_RS18305	0.33	+1.7
3,966,776	+		LRK55_RS18305	0.33	-2.2
3,966,776	+		LRK55_RS18305	0.33	+2.7
3,966,776	+		LRK55_RS18305	0.33	-2.7
3,966,777	-		LRK55_RS18305	0.33	+0.7
3,966,777	-		LRK55_RS18305	0.33	-2.2
3,966,777	-		LRK55_RS18305	0.33	+0.4
3,966,777	-		LRK55_RS18305	0.33	-3.1
3,966,777	-		LRK55_RS18305	0.33	+1.2
3,966,777	-		LRK55_RS18305	0.33	+0.6
3,966,812	+		LRK55_RS18305	0.46	-0.0
3,966,812	+		LRK55_RS18305	0.46	-1.0
3,966,812	+		LRK55_RS18305	0.46	-4.2
3,966,812	+		LRK55_RS18305	0.46	+0.6
3,966,812	+		LRK55_RS18305	0.46	-0.1
3,966,813	-		LRK55_RS18305	0.47	-1.4
3,966,813	-		LRK55_RS18305	0.47	-2.4
3,966,842	+		LRK55_RS18305	0.58	-0.1
3,966,842	+		LRK55_RS18305	0.58	+0.1
3,966,842	+		LRK55_RS18305	0.58	+1.0
3,966,842	+		LRK55_RS18305	0.58	-0.9
3,966,842	+		LRK55_RS18305	0.58	-0.3
3,966,842	+		LRK55_RS18305	0.58	+2.8
3,966,843	-		LRK55_RS18305	0.58	-0.9
3,966,843	-		LRK55_RS18305	0.58	-0.2
3,966,843	-		LRK55_RS18305	0.58	+0.1
3,966,843	-		LRK55_RS18305	0.58	-1.7
3,966,843	-		LRK55_RS18305	0.58	+0.7
3,966,843	-		LRK55_RS18305	0.58	-1.3
3,966,843	-		LRK55_RS18305	0.58	-2.1
3,966,879	+		LRK55_RS18305	0.72	-1.3
3,966,879	+		LRK55_RS18305	0.72	-0.9
3,966,879	+		LRK55_RS18305	0.72	-0.1
3,966,879	+		LRK55_RS18305	0.72	-1.4
3,966,879	+		LRK55_RS18305	0.72	-2.3
3,966,879	+		LRK55_RS18305	0.72	-0.7
3,966,879	+		LRK55_RS18305	0.72	-1.1
3,966,879	+		LRK55_RS18305	0.72	+2.9
3,966,879	+		LRK55_RS18305	0.72	-1.1
3,966,879	+		LRK55_RS18305	0.72	-0.8
3,966,879	+		LRK55_RS18305	0.72	-3.6
3,966,879	+		LRK55_RS18305	0.72	-0.9
3,966,880	-		LRK55_RS18305	0.72	-2.3
3,966,880	-		LRK55_RS18305	0.72	-0.3
3,966,880	-		LRK55_RS18305	0.72	+1.4
3,966,880	-		LRK55_RS18305	0.72	+1.1
3,966,880	-		LRK55_RS18305	0.72	-2.7
3,966,880	-		LRK55_RS18305	0.72	+0.5
3,966,880	-		LRK55_RS18305	0.72	+1.0
3,966,880	-		LRK55_RS18305	0.72	+0.1
3,966,880	-		LRK55_RS18305	0.72	-2.2
3,966,880	-		LRK55_RS18305	0.72	-1.1
3,966,880	-		LRK55_RS18305	0.72	-0.5
3,966,880	-		LRK55_RS18305	0.72	-3.5
3,966,880	-		LRK55_RS18305	0.72	-0.5
3,966,880	-		LRK55_RS18305	0.72	-0.2
3,966,883	+		LRK55_RS18305	0.73	-1.1
3,966,883	+		LRK55_RS18305	0.73	-0.3
3,966,883	+		LRK55_RS18305	0.73	-3.7
3,966,883	+		LRK55_RS18305	0.73	-0.8
3,966,883	+		LRK55_RS18305	0.73	+1.0
3,966,883	+		LRK55_RS18305	0.73	+0.8
3,966,883	+		LRK55_RS18305	0.73	-2.2
3,966,883	+		LRK55_RS18305	0.73	-0.0
3,966,883	+		LRK55_RS18305	0.73	-1.8
3,966,883	+		LRK55_RS18305	0.73	+1.2
3,966,883	+		LRK55_RS18305	0.73	+0.1
3,966,883	+		LRK55_RS18305	0.73	+0.5
3,966,884	-		LRK55_RS18305	0.73	-1.4
3,966,884	-		LRK55_RS18305	0.73	-2.1
3,966,884	-		LRK55_RS18305	0.73	-1.4
3,966,884	-		LRK55_RS18305	0.73	+1.4
3,966,884	-		LRK55_RS18305	0.73	-0.3
3,966,928	+				-2.9
3,966,928	+				+0.0
3,966,928	+				-0.6
3,966,929	-				+1.9
3,966,937	+				-1.9
3,966,938	-				+1.0
3,966,938	-				+0.2
3,966,938	-				-2.4
3,967,064	+				-1.4
3,967,064	+				+0.4
3,967,064	+				-1.4
3,967,064	+				+2.0
3,967,064	+				+1.0
3,967,064	+				-1.1
3,967,064	+				+0.5
3,967,065	-				-0.1
3,967,065	-				+0.5
3,967,065	-				+1.3
3,967,101	+				-1.0
3,967,116	+				-2.0
3,967,117	-				+1.3
3,967,117	-				-1.6
3,967,145	+				-2.4
3,967,145	+				-1.9
3,967,145	+				-2.5
3,967,145	+				-0.4
3,967,145	+				-0.6
3,967,146	-				-0.7
3,967,217	+				-3.4
3,967,217	+				-1.4
3,967,218	-				-1.6
3,967,218	-				-1.0
3,967,218	-				-1.9
3,967,260	+		LRK55_RS18310	0.10	+1.2
3,967,261	-		LRK55_RS18310	0.10	-0.1
3,967,263	+		LRK55_RS18310	0.10	+0.9
3,967,263	+		LRK55_RS18310	0.10	-1.6
3,967,263	+		LRK55_RS18310	0.10	-2.3
3,967,263	+		LRK55_RS18310	0.10	-0.6
3,967,263	+		LRK55_RS18310	0.10	+0.9
3,967,263	+		LRK55_RS18310	0.10	+1.3
3,967,263	+		LRK55_RS18310	0.10	-1.1
3,967,263	+		LRK55_RS18310	0.10	-2.3
3,967,264	-		LRK55_RS18310	0.10	+0.3
3,967,264	-		LRK55_RS18310	0.10	+0.6
3,967,264	-		LRK55_RS18310	0.10	-0.4
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