Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16085

Experiment: R2A_PIPES pH 4.25

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.25
3,512,326	+				-0.1
3,512,327	-				-1.3
3,512,327	-				-0.9
3,512,438	+		LRK55_RS16085	0.17	-0.2
3,512,438	+		LRK55_RS16085	0.17	-3.0
3,512,438	+		LRK55_RS16085	0.17	-1.5
3,512,438	+		LRK55_RS16085	0.17	+2.5
3,512,438	+		LRK55_RS16085	0.17	-0.3
3,512,438	+		LRK55_RS16085	0.17	+0.0
3,512,438	+		LRK55_RS16085	0.17	-2.4
3,512,438	+		LRK55_RS16085	0.17	-1.8
3,512,439	-		LRK55_RS16085	0.17	+1.1
3,512,439	-		LRK55_RS16085	0.17	-0.1
3,512,439	-		LRK55_RS16085	0.17	-0.6
3,512,448	+		LRK55_RS16085	0.19	-2.8
3,512,448	+		LRK55_RS16085	0.19	+0.4
3,512,449	-		LRK55_RS16085	0.19	-1.4
3,512,449	-		LRK55_RS16085	0.19	-0.7
3,512,449	-		LRK55_RS16085	0.19	-0.2
3,512,449	-		LRK55_RS16085	0.19	+0.7
3,512,449	-		LRK55_RS16085	0.19	-2.6
3,512,579	+		LRK55_RS16085	0.43	-2.0
3,512,614	+		LRK55_RS16085	0.49	-0.1
3,512,614	+		LRK55_RS16085	0.49	+0.2
3,512,614	+		LRK55_RS16085	0.49	-2.8
3,512,614	+		LRK55_RS16085	0.49	+0.5
3,512,614	+		LRK55_RS16085	0.49	-2.9
3,512,615	-		LRK55_RS16085	0.50	+0.2
3,512,615	-		LRK55_RS16085	0.50	-1.8
3,512,806	+		LRK55_RS16085	0.85	-0.5
3,512,806	+		LRK55_RS16085	0.85	-1.4
3,512,806	+		LRK55_RS16085	0.85	-0.2
3,512,806	+		LRK55_RS16085	0.85	-2.0
3,512,806	+		LRK55_RS16085	0.85	+0.0
3,512,806	+		LRK55_RS16085	0.85	-1.3
3,512,806	+		LRK55_RS16085	0.85	+1.0
3,512,807	-		LRK55_RS16085	0.85	+0.9
3,512,807	-		LRK55_RS16085	0.85	-2.9
3,512,807	-		LRK55_RS16085	0.85	-2.3
3,512,807	-		LRK55_RS16085	0.85	+0.6
3,512,854	+				-3.0
3,512,854	+				-1.6
3,512,855	-				-2.2
3,512,855	-				-0.1
3,512,855	-				-1.2
3,512,855	-				-2.4
3,512,925	-				+1.6
3,512,929	-				-3.9
3,512,960	-				+1.7
3,512,974	+				-2.3
3,512,974	+				-1.4
3,512,975	-				-0.1
3,513,012	+				+1.0
3,513,012	+				+1.3
3,513,012	+				-0.4
3,513,012	+				-2.2
3,513,012	+				-3.1
3,513,013	-				+0.2
3,513,013	-				-1.7
3,513,044	+				-0.6
3,513,044	+				-2.5
3,513,044	+				+0.6
3,513,045	-				-2.2
3,513,045	-				+1.7
3,513,088	+				+0.2
3,513,088	+				-1.0
3,513,089	-				-2.3
3,513,157	-				+0.0
3,513,157	-				-1.2
3,513,157	-				-1.3
3,513,157	-				+1.4
3,513,157	-				-1.6
3,513,221	+		LRK55_RS16090	0.11	-0.5
3,513,222	-		LRK55_RS16090	0.11	-0.3
3,513,234	+		LRK55_RS16090	0.12	+0.1
3,513,234	+		LRK55_RS16090	0.12	-1.0
3,513,234	+		LRK55_RS16090	0.12	-1.2
3,513,235	-		LRK55_RS16090	0.12	+1.7
3,513,235	-		LRK55_RS16090	0.12	+0.4
3,513,235	-		LRK55_RS16090	0.12	+0.3
3,513,235	-		LRK55_RS16090	0.12	-0.7
3,513,253	+		LRK55_RS16090	0.13	+2.4
3,513,253	+		LRK55_RS16090	0.13	+0.7
3,513,253	+		LRK55_RS16090	0.13	+1.2
3,513,253	+		LRK55_RS16090	0.13	+1.2
3,513,253	+		LRK55_RS16090	0.13	+0.9
3,513,254	-		LRK55_RS16090	0.13	-1.4
3,513,254	-		LRK55_RS16090	0.13	+0.6
3,513,254	-		LRK55_RS16090	0.13	-2.1
3,513,285	+		LRK55_RS16090	0.15	+0.9
3,513,285	+		LRK55_RS16090	0.15	-0.0
3,513,285	+		LRK55_RS16090	0.15	-0.6
3,513,285	+		LRK55_RS16090	0.15	+0.8
3,513,285	+		LRK55_RS16090	0.15	+0.5
3,513,286	-		LRK55_RS16090	0.15	-0.8
3,513,341	+		LRK55_RS16090	0.18	+1.5
3,513,342	+		LRK55_RS16090	0.18	-1.1
3,513,342	+		LRK55_RS16090	0.18	-0.3
3,513,342	+		LRK55_RS16090	0.18	+0.7
3,513,342	+		LRK55_RS16090	0.18	+0.5
3,513,342	+		LRK55_RS16090	0.18	-1.6
3,513,342	+		LRK55_RS16090	0.18	-0.8
3,513,342	+		LRK55_RS16090	0.18	+0.3
3,513,342	+		LRK55_RS16090	0.18	-2.7
3,513,342	+		LRK55_RS16090	0.18	-1.4
3,513,342	+		LRK55_RS16090	0.18	-1.0
3,513,342	+		LRK55_RS16090	0.18	-1.3
3,513,342	+		LRK55_RS16090	0.18	+0.7
3,513,343	-		LRK55_RS16090	0.18	+0.2
3,513,343	-		LRK55_RS16090	0.18	+0.7
3,513,343	-		LRK55_RS16090	0.18	+0.0
3,513,343	-		LRK55_RS16090	0.18	+0.2
3,513,343	-		LRK55_RS16090	0.18	-0.4
3,513,343	-		LRK55_RS16090	0.18	-0.3
3,513,343	-		LRK55_RS16090	0.18	-2.8
3,513,343	-		LRK55_RS16090	0.18	+1.6
3,513,343	-		LRK55_RS16090	0.18	-1.3
3,513,343	-		LRK55_RS16090	0.18	+0.0
3,513,343	-		LRK55_RS16090	0.18	-1.3
3,513,343	-		LRK55_RS16090	0.18	-0.6
3,513,343	-		LRK55_RS16090	0.18	-0.1
3,513,343	-		LRK55_RS16090	0.18	-0.0
3,513,343	-		LRK55_RS16090	0.18	+0.2
3,513,353	+		LRK55_RS16090	0.19	-1.4
3,513,353	+		LRK55_RS16090	0.19	-1.8
3,513,353	+		LRK55_RS16090	0.19	+1.5
3,513,353	+		LRK55_RS16090	0.19	-0.6
3,513,354	-		LRK55_RS16090	0.19	-0.6
3,513,354	-		LRK55_RS16090	0.19	-1.9
3,513,354	-		LRK55_RS16090	0.19	-3.0
3,513,372	+		LRK55_RS16090	0.20	-1.1
3,513,372	+		LRK55_RS16090	0.20	-0.5
3,513,373	-		LRK55_RS16090	0.20	+0.8
3,513,373	-		LRK55_RS16090	0.20	-0.8
3,513,443	+		LRK55_RS16090	0.25	+2.5
3,513,444	-		LRK55_RS16090	0.25	-2.6
3,513,444	-		LRK55_RS16090	0.25	+0.7
3,513,444	-		LRK55_RS16090	0.25	-0.6
3,513,450	+		LRK55_RS16090	0.25	+0.1
3,513,450	+		LRK55_RS16090	0.25	-2.6
3,513,450	+		LRK55_RS16090	0.25	-1.1
3,513,450	+		LRK55_RS16090	0.25	-2.3
3,513,450	+		LRK55_RS16090	0.25	-1.8
3,513,450	+		LRK55_RS16090	0.25	-0.6
3,513,450	+		LRK55_RS16090	0.25	+0.2
3,513,451	-		LRK55_RS16090	0.25	+1.0
3,513,451	-		LRK55_RS16090	0.25	-2.6
3,513,451	-		LRK55_RS16090	0.25	+0.0
3,513,451	-		LRK55_RS16090	0.25	-1.6
3,513,451	-		LRK55_RS16090	0.25	+0.2
3,513,558	+		LRK55_RS16090	0.32	-0.3
3,513,558	+		LRK55_RS16090	0.32	-2.4
3,513,558	+		LRK55_RS16090	0.32	+1.2
3,513,558	+		LRK55_RS16090	0.32	+0.5
3,513,558	+		LRK55_RS16090	0.32	-2.3
3,513,558	+		LRK55_RS16090	0.32	-1.1
3,513,558	+		LRK55_RS16090	0.32	+0.0
3,513,558	+		LRK55_RS16090	0.32	-0.8
3,513,558	+		LRK55_RS16090	0.32	-0.3
3,513,558	+		LRK55_RS16090	0.32	-2.6
3,513,558	+		LRK55_RS16090	0.32	-1.7
3,513,558	+		LRK55_RS16090	0.32	-1.4
3,513,558	+		LRK55_RS16090	0.32	+1.5
3,513,558	+		LRK55_RS16090	0.32	+0.1
3,513,558	+		LRK55_RS16090	0.32	-0.5
3,513,558	+		LRK55_RS16090	0.32	-1.0
3,513,558	+		LRK55_RS16090	0.32	-1.1
3,513,559	-		LRK55_RS16090	0.32	+1.2
3,513,559	-		LRK55_RS16090	0.32	+3.7
3,513,559	-		LRK55_RS16090	0.32	+3.6
3,513,559	-		LRK55_RS16090	0.32	-1.1
3,513,559	-		LRK55_RS16090	0.32	+0.2
3,513,559	-		LRK55_RS16090	0.32	-1.2
3,513,559	-		LRK55_RS16090	0.32	-1.8
3,513,559	-		LRK55_RS16090	0.32	-2.0
3,513,559	-		LRK55_RS16090	0.32	+0.2
3,513,559	-		LRK55_RS16090	0.32	+1.3
3,513,559	-		LRK55_RS16090	0.32	+0.4
3,513,559	-		LRK55_RS16090	0.32	-2.3
3,513,559	-		LRK55_RS16090	0.32	-1.6
3,513,559	-		LRK55_RS16090	0.32	-1.6
3,513,559	-		LRK55_RS16090	0.32	-2.3
3,513,559	-		LRK55_RS16090	0.32	+1.1
3,513,601	-		LRK55_RS16090	0.35	-0.6
3,513,601	-		LRK55_RS16090	0.35	+0.1
3,513,601	-		LRK55_RS16090	0.35	-3.1
3,513,601	-		LRK55_RS16090	0.35	-3.3
3,513,724	+		LRK55_RS16090	0.42	-1.3
3,513,724	+		LRK55_RS16090	0.42	+0.0
3,513,754	+		LRK55_RS16090	0.44	-2.3
3,513,754	+		LRK55_RS16090	0.44	-0.3
3,513,754	+		LRK55_RS16090	0.44	+1.4
3,513,755	-		LRK55_RS16090	0.44	-1.1
3,513,755	-		LRK55_RS16090	0.44	-0.5
3,513,755	-		LRK55_RS16090	0.44	-1.8
3,513,787	+		LRK55_RS16090	0.46	-1.8
3,513,848	-		LRK55_RS16090	0.50	-1.7
3,513,862	+		LRK55_RS16090	0.51	-0.6
3,513,862	+		LRK55_RS16090	0.51	+0.5
3,513,862	+		LRK55_RS16090	0.51	-0.3
3,513,862	+		LRK55_RS16090	0.51	-0.3
3,513,862	+		LRK55_RS16090	0.51	-0.8
3,513,862	+		LRK55_RS16090	0.51	+1.0
3,513,862	+		LRK55_RS16090	0.51	-0.8
3,513,862	+		LRK55_RS16090	0.51	+1.2
3,513,862	+		LRK55_RS16090	0.51	-1.8
3,513,862	+		LRK55_RS16090	0.51	+0.8
3,513,863	-		LRK55_RS16090	0.51	+3.3
3,513,863	-		LRK55_RS16090	0.51	-0.6
3,513,863	-		LRK55_RS16090	0.51	+1.3
3,513,863	-		LRK55_RS16090	0.51	+1.3
3,513,863	-		LRK55_RS16090	0.51	-2.3
3,513,873	+		LRK55_RS16090	0.52	-1.5
3,513,873	+		LRK55_RS16090	0.52	+0.6
3,513,874	-		LRK55_RS16090	0.52	+0.2
3,513,874	-		LRK55_RS16090	0.52	-2.3
3,513,874	-		LRK55_RS16090	0.52	-0.3
3,513,874	-		LRK55_RS16090	0.52	+0.3