Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS01790 and LRK55_RS01795 are separated by 53 nucleotides LRK55_RS01795 and LRK55_RS01800 are separated by 4 nucleotides LRK55_RS01800 and LRK55_RS01805 overlap by 4 nucleotides LRK55_RS01805 and LRK55_RS01810 are separated by 197 nucleotides
LRK55_RS01790: LRK55_RS01790 - cation diffusion facilitator family transporter, at 377,243 to 378,145
_RS01790
LRK55_RS01795: LRK55_RS01795 - DUF2058 domain-containing protein, at 378,199 to 378,738
_RS01795
LRK55_RS01800: LRK55_RS01800 - VOC family protein, at 378,743 to 379,135
_RS01800
LRK55_RS01805: LRK55_RS01805 - MmcQ/YjbR family DNA-binding protein, at 379,132 to 379,530
_RS01805
LRK55_RS01810: LRK55_RS01810 - GNAT family N-acetyltransferase, at 379,728 to 380,333
_RS01810
Position (kb) 378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 377.210 kb on + strand at 377.210 kb on + strand at 377.210 kb on + strand at 377.210 kb on + strand at 377.211 kb on - strand at 377.211 kb on - strand at 377.477 kb on + strand, within LRK55_RS01790 at 377.477 kb on + strand, within LRK55_RS01790 at 377.478 kb on - strand, within LRK55_RS01790 at 377.503 kb on - strand, within LRK55_RS01790 at 377.537 kb on + strand, within LRK55_RS01790 at 377.537 kb on + strand, within LRK55_RS01790 at 377.537 kb on + strand, within LRK55_RS01790 at 377.538 kb on - strand, within LRK55_RS01790 at 377.538 kb on - strand, within LRK55_RS01790 at 377.538 kb on - strand, within LRK55_RS01790 at 377.658 kb on + strand, within LRK55_RS01790 at 377.658 kb on + strand, within LRK55_RS01790 at 377.658 kb on + strand, within LRK55_RS01790 at 377.658 kb on + strand, within LRK55_RS01790 at 377.658 kb on + strand, within LRK55_RS01790 at 377.658 kb on + strand, within LRK55_RS01790 at 377.658 kb on + strand, within LRK55_RS01790 at 377.659 kb on - strand, within LRK55_RS01790 at 377.659 kb on - strand, within LRK55_RS01790 at 377.659 kb on - strand, within LRK55_RS01790 at 378.158 kb on + strand at 378.158 kb on + strand at 378.158 kb on + strand at 378.158 kb on + strand at 378.158 kb on + strand at 378.158 kb on + strand at 378.158 kb on + strand at 378.158 kb on + strand at 378.158 kb on + strand at 378.159 kb on - strand at 378.159 kb on - strand at 378.159 kb on - strand at 378.159 kb on - strand at 378.159 kb on - strand at 378.159 kb on - strand at 378.159 kb on - strand at 378.159 kb on - strand at 378.479 kb on - strand, within LRK55_RS01795 at 378.583 kb on + strand, within LRK55_RS01795 at 378.583 kb on + strand, within LRK55_RS01795 at 378.584 kb on - strand, within LRK55_RS01795 at 378.697 kb on + strand at 378.697 kb on + strand at 378.697 kb on + strand at 378.697 kb on + strand at 378.697 kb on + strand at 378.698 kb on - strand at 378.698 kb on - strand at 378.698 kb on - strand at 378.698 kb on - strand at 378.698 kb on - strand at 378.698 kb on - strand at 378.698 kb on - strand at 378.700 kb on + strand at 378.701 kb on - strand at 378.780 kb on + strand at 378.780 kb on + strand at 378.780 kb on + strand at 378.810 kb on + strand, within LRK55_RS01800 at 378.811 kb on - strand, within LRK55_RS01800 at 378.953 kb on - strand, within LRK55_RS01800 at 378.953 kb on - strand, within LRK55_RS01800 at 379.071 kb on + strand, within LRK55_RS01800 at 379.071 kb on + strand, within LRK55_RS01800 at 379.071 kb on + strand, within LRK55_RS01800 at 379.071 kb on + strand, within LRK55_RS01800 at 379.072 kb on - strand, within LRK55_RS01800 at 379.072 kb on - strand, within LRK55_RS01800 at 379.072 kb on - strand, within LRK55_RS01800 at 379.092 kb on + strand, within LRK55_RS01800 at 379.209 kb on + strand, within LRK55_RS01805 at 379.209 kb on + strand, within LRK55_RS01805 at 379.209 kb on + strand, within LRK55_RS01805 at 379.209 kb on + strand, within LRK55_RS01805 at 379.209 kb on + strand, within LRK55_RS01805 at 379.209 kb on + strand, within LRK55_RS01805 at 379.209 kb on + strand, within LRK55_RS01805 at 379.210 kb on - strand, within LRK55_RS01805 at 379.210 kb on - strand, within LRK55_RS01805 at 379.210 kb on - strand, within LRK55_RS01805 at 379.210 kb on - strand, within LRK55_RS01805 at 379.210 kb on - strand, within LRK55_RS01805 at 379.210 kb on - strand, within LRK55_RS01805 at 379.211 kb on + strand, within LRK55_RS01805 at 379.211 kb on + strand, within LRK55_RS01805 at 379.211 kb on + strand, within LRK55_RS01805 at 379.211 kb on + strand, within LRK55_RS01805 at 379.212 kb on - strand, within LRK55_RS01805 at 379.212 kb on - strand, within LRK55_RS01805 at 379.212 kb on - strand, within LRK55_RS01805 at 379.212 kb on - strand, within LRK55_RS01805 at 379.212 kb on - strand, within LRK55_RS01805
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 377,210 + +1.9 377,210 + +2.5 377,210 + -0.9 377,210 + -0.2 377,211 - +1.7 377,211 - +1.8 377,477 + LRK55_RS01790 0.26 -0.6 377,477 + LRK55_RS01790 0.26 -1.1 377,478 - LRK55_RS01790 0.26 +0.6 377,503 - LRK55_RS01790 0.29 -0.6 377,537 + LRK55_RS01790 0.33 -0.2 377,537 + LRK55_RS01790 0.33 -1.7 377,537 + LRK55_RS01790 0.33 -2.7 377,538 - LRK55_RS01790 0.33 +0.5 377,538 - LRK55_RS01790 0.33 +0.5 377,538 - LRK55_RS01790 0.33 -0.4 377,658 + LRK55_RS01790 0.46 -2.3 377,658 + LRK55_RS01790 0.46 -0.7 377,658 + LRK55_RS01790 0.46 +0.2 377,658 + LRK55_RS01790 0.46 -2.4 377,658 + LRK55_RS01790 0.46 -2.6 377,658 + LRK55_RS01790 0.46 -1.7 377,658 + LRK55_RS01790 0.46 -1.6 377,659 - LRK55_RS01790 0.46 +1.2 377,659 - LRK55_RS01790 0.46 -1.4 377,659 - LRK55_RS01790 0.46 +0.5 378,158 + +0.1 378,158 + -1.1 378,158 + -1.2 378,158 + +0.9 378,158 + -1.7 378,158 + +1.5 378,158 + +0.9 378,158 + -2.1 378,158 + -2.1 378,159 - +0.3 378,159 - +0.1 378,159 - +0.5 378,159 - -0.7 378,159 - +1.9 378,159 - +0.4 378,159 - -2.9 378,159 - -1.7 378,479 - LRK55_RS01795 0.52 +2.4 378,583 + LRK55_RS01795 0.71 -0.5 378,583 + LRK55_RS01795 0.71 +0.4 378,584 - LRK55_RS01795 0.71 +0.5 378,697 + -0.7 378,697 + +0.6 378,697 + -0.9 378,697 + -1.1 378,697 + -0.1 378,698 - +0.7 378,698 - -1.6 378,698 - +0.3 378,698 - -2.5 378,698 - -2.6 378,698 - -0.0 378,698 - -0.7 378,700 + -1.1 378,701 - +1.0 378,780 + -0.4 378,780 + -2.6 378,780 + +0.7 378,810 + LRK55_RS01800 0.17 +1.1 378,811 - LRK55_RS01800 0.17 +0.8 378,953 - LRK55_RS01800 0.53 -0.1 378,953 - LRK55_RS01800 0.53 +3.8 379,071 + LRK55_RS01800 0.83 +0.5 379,071 + LRK55_RS01800 0.83 +0.3 379,071 + LRK55_RS01800 0.83 -3.2 379,071 + LRK55_RS01800 0.83 +0.5 379,072 - LRK55_RS01800 0.84 -1.8 379,072 - LRK55_RS01800 0.84 +0.3 379,072 - LRK55_RS01800 0.84 -0.3 379,092 + LRK55_RS01800 0.89 -2.4 379,209 + LRK55_RS01805 0.19 -0.1 379,209 + LRK55_RS01805 0.19 -1.6 379,209 + LRK55_RS01805 0.19 -1.8 379,209 + LRK55_RS01805 0.19 +0.7 379,209 + LRK55_RS01805 0.19 +1.5 379,209 + LRK55_RS01805 0.19 -0.2 379,209 + LRK55_RS01805 0.19 +0.0 379,210 - LRK55_RS01805 0.20 -1.7 379,210 - LRK55_RS01805 0.20 -2.2 379,210 - LRK55_RS01805 0.20 +1.9 379,210 - LRK55_RS01805 0.20 +0.6 379,210 - LRK55_RS01805 0.20 -0.2 379,210 - LRK55_RS01805 0.20 -0.6 379,211 + LRK55_RS01805 0.20 +0.3 379,211 + LRK55_RS01805 0.20 +3.4 379,211 + LRK55_RS01805 0.20 +3.2 379,211 + LRK55_RS01805 0.20 -1.2 379,212 - LRK55_RS01805 0.20 +0.9 379,212 - LRK55_RS01805 0.20 -1.1 379,212 - LRK55_RS01805 0.20 +2.4 379,212 - LRK55_RS01805 0.20 +1.7 379,212 - LRK55_RS01805 0.20 +0.6
Or see this region's nucleotide sequence