Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS01730

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS01720 and LRK55_RS01725 are separated by 137 nucleotidesLRK55_RS01725 and LRK55_RS01730 are separated by 6 nucleotidesLRK55_RS01730 and LRK55_RS01735 overlap by 4 nucleotides LRK55_RS01720: LRK55_RS01720 - YncE family protein, at 362,383 to 363,393 _RS01720 LRK55_RS01725: LRK55_RS01725 - GDCCVxC domain-containing (seleno)protein, at 363,531 to 363,746 _RS01725 LRK55_RS01730: LRK55_RS01730 - CusA/CzcA family heavy metal efflux RND transporter, at 363,753 to 366,926 _RS01730 LRK55_RS01735: LRK55_RS01735 - efflux RND transporter periplasmic adaptor subunit, at 366,923 to 368,239 _RS01735 Position (kb) 363 364 365 366 367Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 362.794 kb on + strand, within LRK55_RS01720at 362.794 kb on + strand, within LRK55_RS01720at 362.794 kb on + strand, within LRK55_RS01720at 362.794 kb on + strand, within LRK55_RS01720at 362.794 kb on + strand, within LRK55_RS01720at 362.794 kb on + strand, within LRK55_RS01720at 362.794 kb on + strand, within LRK55_RS01720at 362.794 kb on + strand, within LRK55_RS01720at 362.795 kb on - strand, within LRK55_RS01720at 362.795 kb on - strand, within LRK55_RS01720at 362.795 kb on - strand, within LRK55_RS01720at 362.818 kb on + strand, within LRK55_RS01720at 362.818 kb on + strand, within LRK55_RS01720at 362.818 kb on + strand, within LRK55_RS01720at 362.818 kb on + strand, within LRK55_RS01720at 362.818 kb on + strand, within LRK55_RS01720at 362.818 kb on + strand, within LRK55_RS01720at 362.818 kb on + strand, within LRK55_RS01720at 362.818 kb on + strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.819 kb on - strand, within LRK55_RS01720at 362.920 kb on + strand, within LRK55_RS01720at 362.920 kb on + strand, within LRK55_RS01720at 362.921 kb on - strand, within LRK55_RS01720at 362.921 kb on - strand, within LRK55_RS01720at 363.002 kb on + strand, within LRK55_RS01720at 363.002 kb on + strand, within LRK55_RS01720at 363.003 kb on - strand, within LRK55_RS01720at 363.003 kb on - strand, within LRK55_RS01720at 363.003 kb on - strand, within LRK55_RS01720at 363.003 kb on - strand, within LRK55_RS01720at 363.003 kb on - strand, within LRK55_RS01720at 363.178 kb on + strand, within LRK55_RS01720at 363.178 kb on + strand, within LRK55_RS01720at 363.178 kb on + strand, within LRK55_RS01720at 363.178 kb on + strand, within LRK55_RS01720at 363.179 kb on - strand, within LRK55_RS01720at 363.202 kb on + strand, within LRK55_RS01720at 363.202 kb on + strand, within LRK55_RS01720at 363.202 kb on + strand, within LRK55_RS01720at 363.203 kb on - strand, within LRK55_RS01720at 363.203 kb on - strand, within LRK55_RS01720at 363.203 kb on - strand, within LRK55_RS01720at 363.203 kb on - strand, within LRK55_RS01720at 363.203 kb on - strand, within LRK55_RS01720at 363.331 kb on + strandat 363.648 kb on + strand, within LRK55_RS01725at 363.649 kb on + strand, within LRK55_RS01725at 363.649 kb on + strand, within LRK55_RS01725at 363.649 kb on + strand, within LRK55_RS01725at 363.650 kb on - strand, within LRK55_RS01725at 363.650 kb on - strand, within LRK55_RS01725at 363.650 kb on - strand, within LRK55_RS01725at 363.754 kb on + strandat 363.754 kb on + strandat 363.759 kb on + strandat 363.760 kb on - strandat 363.760 kb on - strandat 364.087 kb on + strand, within LRK55_RS01730at 364.087 kb on + strand, within LRK55_RS01730at 364.088 kb on - strand, within LRK55_RS01730at 364.088 kb on - strand, within LRK55_RS01730at 364.264 kb on + strand, within LRK55_RS01730at 364.264 kb on + strand, within LRK55_RS01730at 364.264 kb on + strand, within LRK55_RS01730at 364.336 kb on + strand, within LRK55_RS01730at 364.453 kb on + strand, within LRK55_RS01730at 364.454 kb on - strand, within LRK55_RS01730at 364.454 kb on - strand, within LRK55_RS01730at 364.454 kb on - strand, within LRK55_RS01730at 364.459 kb on + strand, within LRK55_RS01730at 364.459 kb on + strand, within LRK55_RS01730at 364.459 kb on + strand, within LRK55_RS01730at 364.459 kb on + strand, within LRK55_RS01730at 364.459 kb on + strand, within LRK55_RS01730at 364.459 kb on + strand, within LRK55_RS01730at 364.459 kb on + strand, within LRK55_RS01730at 364.460 kb on - strand, within LRK55_RS01730at 364.460 kb on - strand, within LRK55_RS01730at 364.460 kb on - strand, within LRK55_RS01730at 364.460 kb on - strand, within LRK55_RS01730at 364.460 kb on - strand, within LRK55_RS01730at 364.460 kb on - strand, within LRK55_RS01730at 364.677 kb on + strand, within LRK55_RS01730at 364.677 kb on + strand, within LRK55_RS01730at 364.759 kb on + strand, within LRK55_RS01730at 364.759 kb on + strand, within LRK55_RS01730at 364.759 kb on + strand, within LRK55_RS01730at 364.760 kb on - strand, within LRK55_RS01730at 364.760 kb on - strand, within LRK55_RS01730at 364.760 kb on - strand, within LRK55_RS01730at 364.760 kb on - strand, within LRK55_RS01730at 365.112 kb on + strand, within LRK55_RS01730at 365.112 kb on + strand, within LRK55_RS01730at 365.113 kb on - strand, within LRK55_RS01730at 365.113 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.213 kb on - strand, within LRK55_RS01730at 365.353 kb on + strand, within LRK55_RS01730at 365.953 kb on + strand, within LRK55_RS01730at 365.953 kb on + strand, within LRK55_RS01730at 365.953 kb on + strand, within LRK55_RS01730at 365.954 kb on - strand, within LRK55_RS01730at 365.954 kb on - strand, within LRK55_RS01730at 366.221 kb on - strand, within LRK55_RS01730at 366.221 kb on - strand, within LRK55_RS01730at 366.221 kb on - strand, within LRK55_RS01730at 366.508 kb on + strand, within LRK55_RS01730at 366.508 kb on + strand, within LRK55_RS01730at 366.509 kb on - strand, within LRK55_RS01730at 366.589 kb on + strand, within LRK55_RS01730at 366.589 kb on + strand, within LRK55_RS01730at 366.589 kb on + strand, within LRK55_RS01730at 366.589 kb on + strand, within LRK55_RS01730at 366.590 kb on - strand, within LRK55_RS01730at 366.590 kb on - strand, within LRK55_RS01730at 366.616 kb on + strandat 366.617 kb on - strandat 366.617 kb on - strandat 366.646 kb on + strandat 366.646 kb on + strandat 366.646 kb on + strandat 366.646 kb on + strandat 366.647 kb on - strandat 366.647 kb on - strandat 366.647 kb on - strandat 366.652 kb on + strandat 366.652 kb on + strandat 366.652 kb on + strandat 366.652 kb on + strandat 366.653 kb on - strandat 366.653 kb on - strandat 366.653 kb on - strandat 366.653 kb on - strandat 366.727 kb on + strandat 367.132 kb on - strand, within LRK55_RS01735at 367.132 kb on - strand, within LRK55_RS01735at 367.725 kb on + strand, within LRK55_RS01735at 367.726 kb on - strand, within LRK55_RS01735at 367.726 kb on - strand, within LRK55_RS01735at 367.726 kb on - strand, within LRK55_RS01735at 367.798 kb on - strand, within LRK55_RS01735

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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362,794 + LRK55_RS01720 0.41 +0.2
362,794 + LRK55_RS01720 0.41 -0.8
362,794 + LRK55_RS01720 0.41 +1.8
362,794 + LRK55_RS01720 0.41 -1.0
362,794 + LRK55_RS01720 0.41 -1.0
362,794 + LRK55_RS01720 0.41 -0.6
362,794 + LRK55_RS01720 0.41 +0.9
362,794 + LRK55_RS01720 0.41 -0.6
362,795 - LRK55_RS01720 0.41 -2.2
362,795 - LRK55_RS01720 0.41 -1.7
362,795 - LRK55_RS01720 0.41 +1.6
362,818 + LRK55_RS01720 0.43 +2.3
362,818 + LRK55_RS01720 0.43 -0.0
362,818 + LRK55_RS01720 0.43 -0.6
362,818 + LRK55_RS01720 0.43 +0.2
362,818 + LRK55_RS01720 0.43 +1.5
362,818 + LRK55_RS01720 0.43 +1.5
362,818 + LRK55_RS01720 0.43 -2.6
362,818 + LRK55_RS01720 0.43 +1.8
362,819 - LRK55_RS01720 0.43 +0.5
362,819 - LRK55_RS01720 0.43 +0.2
362,819 - LRK55_RS01720 0.43 +1.8
362,819 - LRK55_RS01720 0.43 -1.4
362,819 - LRK55_RS01720 0.43 -1.0
362,819 - LRK55_RS01720 0.43 -0.4
362,819 - LRK55_RS01720 0.43 -0.6
362,819 - LRK55_RS01720 0.43 +0.5
362,819 - LRK55_RS01720 0.43 -1.8
362,819 - LRK55_RS01720 0.43 -0.8
362,819 - LRK55_RS01720 0.43 -1.4
362,920 + LRK55_RS01720 0.53 -0.4
362,920 + LRK55_RS01720 0.53 -0.9
362,921 - LRK55_RS01720 0.53 +2.6
362,921 - LRK55_RS01720 0.53 -0.2
363,002 + LRK55_RS01720 0.61 -2.8
363,002 + LRK55_RS01720 0.61 -0.0
363,003 - LRK55_RS01720 0.61 -3.4
363,003 - LRK55_RS01720 0.61 +0.4
363,003 - LRK55_RS01720 0.61 -0.8
363,003 - LRK55_RS01720 0.61 -0.1
363,003 - LRK55_RS01720 0.61 -2.8
363,178 + LRK55_RS01720 0.79 -2.8
363,178 + LRK55_RS01720 0.79 +0.8
363,178 + LRK55_RS01720 0.79 +1.6
363,178 + LRK55_RS01720 0.79 +0.4
363,179 - LRK55_RS01720 0.79 +0.2
363,202 + LRK55_RS01720 0.81 -0.0
363,202 + LRK55_RS01720 0.81 +0.7
363,202 + LRK55_RS01720 0.81 -1.6
363,203 - LRK55_RS01720 0.81 +2.5
363,203 - LRK55_RS01720 0.81 +1.6
363,203 - LRK55_RS01720 0.81 -0.2
363,203 - LRK55_RS01720 0.81 -0.7
363,203 - LRK55_RS01720 0.81 -3.1
363,331 + -2.5
363,648 + LRK55_RS01725 0.54 +0.3
363,649 + LRK55_RS01725 0.55 -0.4
363,649 + LRK55_RS01725 0.55 +5.0
363,649 + LRK55_RS01725 0.55 -0.3
363,650 - LRK55_RS01725 0.55 -0.3
363,650 - LRK55_RS01725 0.55 +1.1
363,650 - LRK55_RS01725 0.55 +0.0
363,754 + -0.5
363,754 + -1.9
363,759 + -1.9
363,760 - +0.3
363,760 - -2.6
364,087 + LRK55_RS01730 0.11 -2.4
364,087 + LRK55_RS01730 0.11 -0.2
364,088 - LRK55_RS01730 0.11 -1.7
364,088 - LRK55_RS01730 0.11 -1.6
364,264 + LRK55_RS01730 0.16 +2.8
364,264 + LRK55_RS01730 0.16 -0.2
364,264 + LRK55_RS01730 0.16 +0.5
364,336 + LRK55_RS01730 0.18 +0.3
364,453 + LRK55_RS01730 0.22 +0.0
364,454 - LRK55_RS01730 0.22 +0.7
364,454 - LRK55_RS01730 0.22 -0.4
364,454 - LRK55_RS01730 0.22 +0.8
364,459 + LRK55_RS01730 0.22 -0.6
364,459 + LRK55_RS01730 0.22 -0.1
364,459 + LRK55_RS01730 0.22 +0.2
364,459 + LRK55_RS01730 0.22 -2.2
364,459 + LRK55_RS01730 0.22 -0.5
364,459 + LRK55_RS01730 0.22 +1.3
364,459 + LRK55_RS01730 0.22 +0.8
364,460 - LRK55_RS01730 0.22 -0.2
364,460 - LRK55_RS01730 0.22 -1.0
364,460 - LRK55_RS01730 0.22 +0.8
364,460 - LRK55_RS01730 0.22 -0.8
364,460 - LRK55_RS01730 0.22 +0.5
364,460 - LRK55_RS01730 0.22 +0.7
364,677 + LRK55_RS01730 0.29 +0.4
364,677 + LRK55_RS01730 0.29 +0.2
364,759 + LRK55_RS01730 0.32 +0.5
364,759 + LRK55_RS01730 0.32 +1.2
364,759 + LRK55_RS01730 0.32 +0.9
364,760 - LRK55_RS01730 0.32 +0.3
364,760 - LRK55_RS01730 0.32 +0.6
364,760 - LRK55_RS01730 0.32 +1.5
364,760 - LRK55_RS01730 0.32 +0.8
365,112 + LRK55_RS01730 0.43 +3.0
365,112 + LRK55_RS01730 0.43 -0.2
365,113 - LRK55_RS01730 0.43 -1.2
365,113 - LRK55_RS01730 0.43 -0.0
365,213 - LRK55_RS01730 0.46 +2.2
365,213 - LRK55_RS01730 0.46 -1.0
365,213 - LRK55_RS01730 0.46 +3.0
365,213 - LRK55_RS01730 0.46 -0.3
365,213 - LRK55_RS01730 0.46 +0.9
365,213 - LRK55_RS01730 0.46 -1.4
365,213 - LRK55_RS01730 0.46 -0.0
365,213 - LRK55_RS01730 0.46 -1.3
365,213 - LRK55_RS01730 0.46 -0.0
365,213 - LRK55_RS01730 0.46 -2.4
365,213 - LRK55_RS01730 0.46 -1.0
365,353 + LRK55_RS01730 0.50 -0.5
365,953 + LRK55_RS01730 0.69 -0.6
365,953 + LRK55_RS01730 0.69 -3.0
365,953 + LRK55_RS01730 0.69 -0.2
365,954 - LRK55_RS01730 0.69 +0.0
365,954 - LRK55_RS01730 0.69 +0.0
366,221 - LRK55_RS01730 0.78 +0.7
366,221 - LRK55_RS01730 0.78 +0.2
366,221 - LRK55_RS01730 0.78 +0.4
366,508 + LRK55_RS01730 0.87 +0.1
366,508 + LRK55_RS01730 0.87 +1.2
366,509 - LRK55_RS01730 0.87 +1.2
366,589 + LRK55_RS01730 0.89 -3.1
366,589 + LRK55_RS01730 0.89 +1.1
366,589 + LRK55_RS01730 0.89 -1.2
366,589 + LRK55_RS01730 0.89 +1.1
366,590 - LRK55_RS01730 0.89 +2.1
366,590 - LRK55_RS01730 0.89 -0.9
366,616 + +2.1
366,617 - +0.6
366,617 - -2.6
366,646 + +2.5
366,646 + -1.9
366,646 + -0.0
366,646 + -0.8
366,647 - +1.3
366,647 - -0.8
366,647 - -1.0
366,652 + +2.0
366,652 + +2.3
366,652 + +0.8
366,652 + -0.1
366,653 - +1.4
366,653 - -2.9
366,653 - -3.0
366,653 - +1.1
366,727 + +0.2
367,132 - LRK55_RS01735 0.16 +2.9
367,132 - LRK55_RS01735 0.16 +3.3
367,725 + LRK55_RS01735 0.61 -1.0
367,726 - LRK55_RS01735 0.61 -2.2
367,726 - LRK55_RS01735 0.61 +0.7
367,726 - LRK55_RS01735 0.61 +0.5
367,798 - LRK55_RS01735 0.66 +1.7

Or see this region's nucleotide sequence