Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS01610 and LRK55_RS01615 overlap by 8 nucleotides LRK55_RS01615 and LRK55_RS01620 overlap by 4 nucleotides LRK55_RS01620 and LRK55_RS01625 are separated by 176 nucleotides
LRK55_RS01610: LRK55_RS01610 - DeoR/GlpR family DNA-binding transcription regulator, at 341,683 to 342,477
_RS01610
LRK55_RS01615: LRK55_RS01615 - HAD family phosphatase, at 342,470 to 343,099
_RS01615
LRK55_RS01620: LRK55_RS01620 - MFS transporter, at 343,096 to 344,259
_RS01620
LRK55_RS01625: LRK55_RS01625 - methionine--tRNA ligase, at 344,436 to 346,538
_RS01625
Position (kb) 343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 342.293 kb on + strand, within LRK55_RS01610 at 342.293 kb on + strand, within LRK55_RS01610 at 342.471 kb on + strand at 342.471 kb on + strand at 342.471 kb on + strand at 342.472 kb on - strand at 342.499 kb on + strand at 342.500 kb on - strand at 342.600 kb on + strand, within LRK55_RS01615 at 342.600 kb on + strand, within LRK55_RS01615 at 342.600 kb on + strand, within LRK55_RS01615 at 342.600 kb on + strand, within LRK55_RS01615 at 342.600 kb on + strand, within LRK55_RS01615 at 342.600 kb on + strand, within LRK55_RS01615 at 342.601 kb on - strand, within LRK55_RS01615 at 342.601 kb on - strand, within LRK55_RS01615 at 342.601 kb on - strand, within LRK55_RS01615 at 342.724 kb on - strand, within LRK55_RS01615 at 342.774 kb on + strand, within LRK55_RS01615 at 342.774 kb on + strand, within LRK55_RS01615 at 342.774 kb on + strand, within LRK55_RS01615 at 342.774 kb on + strand, within LRK55_RS01615 at 343.023 kb on + strand, within LRK55_RS01615 at 343.311 kb on + strand, within LRK55_RS01620 at 343.502 kb on + strand, within LRK55_RS01620 at 343.916 kb on + strand, within LRK55_RS01620 at 343.916 kb on + strand, within LRK55_RS01620 at 343.916 kb on + strand, within LRK55_RS01620 at 343.916 kb on + strand, within LRK55_RS01620 at 343.916 kb on + strand, within LRK55_RS01620 at 343.916 kb on + strand, within LRK55_RS01620 at 343.917 kb on - strand, within LRK55_RS01620 at 343.917 kb on - strand, within LRK55_RS01620 at 343.917 kb on - strand, within LRK55_RS01620 at 343.917 kb on - strand, within LRK55_RS01620 at 343.917 kb on - strand, within LRK55_RS01620 at 343.917 kb on - strand, within LRK55_RS01620 at 343.917 kb on - strand, within LRK55_RS01620 at 343.981 kb on + strand, within LRK55_RS01620 at 343.981 kb on + strand, within LRK55_RS01620 at 343.981 kb on + strand, within LRK55_RS01620 at 343.981 kb on + strand, within LRK55_RS01620 at 343.981 kb on + strand, within LRK55_RS01620 at 343.982 kb on - strand, within LRK55_RS01620 at 343.982 kb on - strand, within LRK55_RS01620 at 343.982 kb on - strand, within LRK55_RS01620 at 343.982 kb on - strand, within LRK55_RS01620 at 344.132 kb on + strand, within LRK55_RS01620 at 344.263 kb on + strand at 344.263 kb on + strand at 344.263 kb on + strand at 344.264 kb on - strand at 344.287 kb on - strand at 344.287 kb on - strand at 344.307 kb on - strand at 344.406 kb on + strand at 344.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 342,293 + LRK55_RS01610 0.77 -0.8 342,293 + LRK55_RS01610 0.77 -0.7 342,471 + +1.2 342,471 + +1.2 342,471 + -1.4 342,472 - +0.0 342,499 + -0.5 342,500 - +1.9 342,600 + LRK55_RS01615 0.21 -0.7 342,600 + LRK55_RS01615 0.21 -0.1 342,600 + LRK55_RS01615 0.21 +0.5 342,600 + LRK55_RS01615 0.21 -1.1 342,600 + LRK55_RS01615 0.21 -2.0 342,600 + LRK55_RS01615 0.21 +1.4 342,601 - LRK55_RS01615 0.21 +1.4 342,601 - LRK55_RS01615 0.21 +2.3 342,601 - LRK55_RS01615 0.21 -0.5 342,724 - LRK55_RS01615 0.40 +0.9 342,774 + LRK55_RS01615 0.48 -0.1 342,774 + LRK55_RS01615 0.48 +0.2 342,774 + LRK55_RS01615 0.48 +0.7 342,774 + LRK55_RS01615 0.48 -2.5 343,023 + LRK55_RS01615 0.88 +1.2 343,311 + LRK55_RS01620 0.18 +1.7 343,502 + LRK55_RS01620 0.35 +1.6 343,916 + LRK55_RS01620 0.70 -3.2 343,916 + LRK55_RS01620 0.70 -1.4 343,916 + LRK55_RS01620 0.70 -1.8 343,916 + LRK55_RS01620 0.70 +1.6 343,916 + LRK55_RS01620 0.70 +0.3 343,916 + LRK55_RS01620 0.70 -1.3 343,917 - LRK55_RS01620 0.71 +2.3 343,917 - LRK55_RS01620 0.71 +0.4 343,917 - LRK55_RS01620 0.71 -1.7 343,917 - LRK55_RS01620 0.71 -1.3 343,917 - LRK55_RS01620 0.71 +1.1 343,917 - LRK55_RS01620 0.71 +0.7 343,917 - LRK55_RS01620 0.71 -0.8 343,981 + LRK55_RS01620 0.76 +0.5 343,981 + LRK55_RS01620 0.76 +0.9 343,981 + LRK55_RS01620 0.76 -0.3 343,981 + LRK55_RS01620 0.76 -0.8 343,981 + LRK55_RS01620 0.76 +0.7 343,982 - LRK55_RS01620 0.76 +1.3 343,982 - LRK55_RS01620 0.76 +1.3 343,982 - LRK55_RS01620 0.76 -2.0 343,982 - LRK55_RS01620 0.76 -0.3 344,132 + LRK55_RS01620 0.89 -2.2 344,263 + -2.4 344,263 + -1.8 344,263 + +2.0 344,264 - +1.1 344,287 - -0.0 344,287 - -0.8 344,307 - +1.4 344,406 + -0.6 344,406 + +2.8
Or see this region's nucleotide sequence