Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS08870

Experiment: Anaerobic; Nickel (II) chloride 20 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic; Nickel (II) chloride 20 uM
1,889,530	+		ABCV34_RS08865	0.51	-2.5
1,889,530	+		ABCV34_RS08865	0.51	-0.0
1,889,530	+		ABCV34_RS08865	0.51	-2.6
1,889,530	+		ABCV34_RS08865	0.51	-3.4
1,889,531	-		ABCV34_RS08865	0.51	-1.0
1,889,531	-		ABCV34_RS08865	0.51	-1.2
1,889,531	-		ABCV34_RS08865	0.51	-2.5
1,889,531	-		ABCV34_RS08865	0.51	-0.8
1,889,531	-		ABCV34_RS08865	0.51	-2.6
1,889,531	-		ABCV34_RS08865	0.51	-2.2
1,889,558	-		ABCV34_RS08865	0.52	-1.3
1,889,667	+		ABCV34_RS08865	0.58	-1.7
1,889,668	-		ABCV34_RS08865	0.59	-2.5
1,889,668	-		ABCV34_RS08865	0.59	-2.1
1,889,668	-		ABCV34_RS08865	0.59	-1.4
1,889,716	+		ABCV34_RS08865	0.61	-1.9
1,889,716	+		ABCV34_RS08865	0.61	-1.6
1,889,716	+		ABCV34_RS08865	0.61	-1.9
1,889,716	+		ABCV34_RS08865	0.61	-2.3
1,889,716	+		ABCV34_RS08865	0.61	-2.4
1,889,716	+		ABCV34_RS08865	0.61	-1.0
1,889,716	+		ABCV34_RS08865	0.61	-2.6
1,889,717	-		ABCV34_RS08865	0.61	-2.3
1,889,717	-		ABCV34_RS08865	0.61	-3.0
1,889,717	-		ABCV34_RS08865	0.61	-3.0
1,889,717	-		ABCV34_RS08865	0.61	-1.6
1,889,717	-		ABCV34_RS08865	0.61	-0.4
1,889,717	-		ABCV34_RS08865	0.61	-1.9
1,889,870	+		ABCV34_RS08865	0.70	-2.3
1,889,870	+		ABCV34_RS08865	0.70	-1.3
1,889,870	+		ABCV34_RS08865	0.70	-2.2
1,889,871	-		ABCV34_RS08865	0.70	-2.6
1,889,896	+		ABCV34_RS08865	0.71	-2.4
1,889,896	+		ABCV34_RS08865	0.71	-1.0
1,889,896	+		ABCV34_RS08865	0.71	-1.6
1,889,896	+		ABCV34_RS08865	0.71	-0.0
1,889,896	+		ABCV34_RS08865	0.71	-1.0
1,889,896	+		ABCV34_RS08865	0.71	-2.8
1,889,896	+		ABCV34_RS08865	0.71	+0.6
1,889,896	+		ABCV34_RS08865	0.71	-3.2
1,889,896	+		ABCV34_RS08865	0.71	-2.8
1,889,896	+		ABCV34_RS08865	0.71	-1.8
1,889,896	+		ABCV34_RS08865	0.71	-3.2
1,889,896	+		ABCV34_RS08865	0.71	-2.6
1,889,897	-		ABCV34_RS08865	0.71	-1.8
1,889,897	-		ABCV34_RS08865	0.71	-2.4
1,889,897	-		ABCV34_RS08865	0.71	-2.3
1,889,897	-		ABCV34_RS08865	0.71	-1.3
1,889,897	-		ABCV34_RS08865	0.71	-2.0
1,889,897	-		ABCV34_RS08865	0.71	-3.2
1,889,897	-		ABCV34_RS08865	0.71	-3.0
1,889,897	-		ABCV34_RS08865	0.71	-1.9
1,889,897	-		ABCV34_RS08865	0.71	-0.4
1,889,928	+		ABCV34_RS08865	0.73	-0.0
1,889,983	+		ABCV34_RS08865	0.76	-3.0
1,889,983	+		ABCV34_RS08865	0.76	-2.4
1,889,983	+		ABCV34_RS08865	0.76	-0.4
1,889,983	+		ABCV34_RS08865	0.76	-2.2
1,889,984	-		ABCV34_RS08865	0.76	-2.0
1,890,172	+		ABCV34_RS08865	0.87	-1.6
1,890,172	+		ABCV34_RS08865	0.87	-2.4
1,890,173	-		ABCV34_RS08865	0.87	-0.6
1,890,173	-		ABCV34_RS08865	0.87	-0.8
1,890,199	+		ABCV34_RS08865	0.89	-1.8
1,890,200	-		ABCV34_RS08865	0.89	-1.6
1,890,200	-		ABCV34_RS08865	0.89	-3.8
1,890,200	-		ABCV34_RS08865	0.89	-2.6
1,890,290	-				-0.4
1,890,309	+				-0.0
1,890,340	+				-3.0
1,890,340	+				-2.2
1,890,341	-				-2.3
1,890,341	-				-1.8
1,890,341	-				+1.6
1,890,447	+				-0.0
1,890,447	+				-1.3
1,890,447	+				-0.0
1,890,447	+				-0.6
1,890,448	-				-1.4
1,890,448	-				-1.8
1,890,448	-				-2.2
1,890,498	+		ABCV34_RS08870	0.11	-3.2
1,890,498	+		ABCV34_RS08870	0.11	-2.2
1,890,499	-		ABCV34_RS08870	0.11	-2.4
1,890,499	-		ABCV34_RS08870	0.11	-2.2
1,890,736	+		ABCV34_RS08870	0.38	-2.0
1,890,736	+		ABCV34_RS08870	0.38	-1.0
1,890,736	+		ABCV34_RS08870	0.38	-2.6
1,890,737	-		ABCV34_RS08870	0.39	-1.6
1,890,737	-		ABCV34_RS08870	0.39	-2.4
1,890,809	+		ABCV34_RS08870	0.47	-1.0
1,891,032	+		ABCV34_RS08870	0.72	-2.0
1,891,032	+		ABCV34_RS08870	0.72	-3.1
1,891,032	+		ABCV34_RS08870	0.72	-1.6
1,891,032	+		ABCV34_RS08870	0.72	-1.6
1,891,032	+		ABCV34_RS08870	0.72	-1.7
1,891,032	+		ABCV34_RS08870	0.72	-1.8
1,891,032	+		ABCV34_RS08870	0.72	-2.4
1,891,033	-		ABCV34_RS08870	0.72	-1.9
1,891,033	-		ABCV34_RS08870	0.72	-2.6
1,891,033	-		ABCV34_RS08870	0.72	-2.0
1,891,033	-		ABCV34_RS08870	0.72	-0.6
1,891,033	-		ABCV34_RS08870	0.72	-3.0
1,891,041	+		ABCV34_RS08870	0.73	-2.7
1,891,042	-		ABCV34_RS08870	0.73	-2.3
1,891,042	-		ABCV34_RS08870	0.73	-2.2
1,891,066	+		ABCV34_RS08870	0.76	-2.2
1,891,067	-		ABCV34_RS08870	0.76	-2.6
1,891,146	+		ABCV34_RS08870	0.85	-3.6
1,891,146	+		ABCV34_RS08870	0.85	-3.3
1,891,147	-		ABCV34_RS08870	0.85	-1.4
1,891,184	-		ABCV34_RS08870	0.89	+0.3
1,891,228	+				-1.8
1,891,228	+				-1.2
1,891,228	+				-2.6
1,891,228	+				-2.4
1,891,228	+				-2.4
1,891,228	+				-1.2
1,891,229	-				-2.8
1,891,229	-				-2.0
1,891,230	+				-1.6
1,891,230	+				-1.6
1,891,230	+				-0.0
1,891,230	+				-2.1
1,891,230	+				-3.2
1,891,230	+				-2.0
1,891,230	+				-2.2
1,891,230	+				-2.6
1,891,230	+				-2.3
1,891,230	+				-0.6
1,891,230	+				-1.4
1,891,230	+				-3.6
1,891,230	+				-1.0
1,891,230	+				-5.0
1,891,230	+				-1.0
1,891,231	-				-1.7
1,891,231	-				-2.6
1,891,231	-				-1.4
1,891,231	-				-1.8
1,891,231	-				-2.5
1,891,231	-				-2.6
1,891,231	-				-2.0
1,891,231	-				-1.7
1,891,231	-				-2.3
1,891,231	-				-1.3
1,891,231	-				-1.6
1,891,231	-				-0.2
1,891,231	-				-2.8
1,891,231	-				-0.9
1,891,231	-				-1.1
1,891,231	-				-2.0
1,891,231	-				-1.5
1,891,231	-				-1.5
1,891,231	-				-2.0
1,891,231	-				-1.0
1,891,231	-				-2.4
1,891,231	-				-3.9
1,891,263	+				-1.4
1,891,264	-				-1.4
1,891,312	+				-2.0
1,891,313	-				-2.5
1,891,313	-				-1.4
1,891,313	-				-1.6
1,891,374	+				-0.0
1,891,375	-				-0.0
1,891,391	+				-3.0
1,891,391	+				-0.0
1,891,391	+				-2.4
1,891,392	-				-1.0
1,891,392	-				-1.3
1,891,487	+				-2.6
1,891,487	+				-2.4
1,891,487	+				-1.9
1,891,487	+				-1.6
1,891,487	+				+0.4
1,891,488	-				+1.0
1,891,488	-				-3.4
1,891,529	+		ABCV34_RS08875	0.11	-3.6
1,891,529	+		ABCV34_RS08875	0.11	-0.8
1,891,529	+		ABCV34_RS08875	0.11	-2.8
1,891,529	+		ABCV34_RS08875	0.11	-0.0
1,891,529	+		ABCV34_RS08875	0.11	-2.6
1,891,529	+		ABCV34_RS08875	0.11	+1.0
1,891,529	+		ABCV34_RS08875	0.11	-0.9
1,891,529	+		ABCV34_RS08875	0.11	-2.6
1,891,530	-		ABCV34_RS08875	0.12	-0.7
1,891,530	-		ABCV34_RS08875	0.12	-2.0
1,891,530	-		ABCV34_RS08875	0.12	-1.7
1,891,530	-		ABCV34_RS08875	0.12	-0.8
1,891,643	+		ABCV34_RS08875	0.21	-2.0
1,891,644	-		ABCV34_RS08875	0.21	+1.6
1,891,644	-		ABCV34_RS08875	0.21	-2.8
1,891,664	+		ABCV34_RS08875	0.23	-1.5
1,891,664	+		ABCV34_RS08875	0.23	-2.6
1,891,664	+		ABCV34_RS08875	0.23	-2.4
1,891,664	+		ABCV34_RS08875	0.23	-2.6
1,891,664	+		ABCV34_RS08875	0.23	-2.4
1,891,664	+		ABCV34_RS08875	0.23	-2.2
1,891,664	+		ABCV34_RS08875	0.23	-2.0
1,891,664	+		ABCV34_RS08875	0.23	-2.2
1,891,664	+		ABCV34_RS08875	0.23	-3.1
1,891,664	+		ABCV34_RS08875	0.23	-0.4
1,891,664	+		ABCV34_RS08875	0.23	-1.4
1,891,664	+		ABCV34_RS08875	0.23	-2.4
1,891,664	+		ABCV34_RS08875	0.23	-2.0
1,891,664	+		ABCV34_RS08875	0.23	-3.5
1,891,664	+		ABCV34_RS08875	0.23	-0.6
1,891,664	+		ABCV34_RS08875	0.23	-1.6
1,891,664	+		ABCV34_RS08875	0.23	-1.3
1,891,664	+		ABCV34_RS08875	0.23	-1.7
1,891,665	-		ABCV34_RS08875	0.23	-2.6
1,891,665	-		ABCV34_RS08875	0.23	-1.9
1,891,665	-		ABCV34_RS08875	0.23	-1.4
1,891,665	-		ABCV34_RS08875	0.23	-1.4
1,891,665	-		ABCV34_RS08875	0.23	-3.5
1,891,665	-		ABCV34_RS08875	0.23	-4.3
1,891,665	-		ABCV34_RS08875	0.23	-2.9
1,891,665	-		ABCV34_RS08875	0.23	-1.4
1,891,665	-		ABCV34_RS08875	0.23	-1.6
1,891,665	-		ABCV34_RS08875	0.23	-3.6
1,891,665	-		ABCV34_RS08875	0.23	-1.9
1,891,665	-		ABCV34_RS08875	0.23	-3.5
1,891,665	-		ABCV34_RS08875	0.23	-1.4
1,891,665	-		ABCV34_RS08875	0.23	-2.1
1,891,665	-		ABCV34_RS08875	0.23	-2.5
1,891,665	-		ABCV34_RS08875	0.23	-1.5
1,891,665	-		ABCV34_RS08875	0.23	-2.4
1,891,665	-		ABCV34_RS08875	0.23	-1.4
1,891,665	-		ABCV34_RS08875	0.23	-3.0
1,891,706	+		ABCV34_RS08875	0.26	-1.0
1,891,841	+		ABCV34_RS08875	0.37	-0.0
1,891,842	-		ABCV34_RS08875	0.37	-2.1
1,891,895	+		ABCV34_RS08875	0.42	-3.6
1,891,895	+		ABCV34_RS08875	0.42	-3.0
1,891,895	+		ABCV34_RS08875	0.42	-2.4
1,891,895	+		ABCV34_RS08875	0.42	-0.6
1,891,895	+		ABCV34_RS08875	0.42	-2.0
1,891,895	+		ABCV34_RS08875	0.42	-2.4
1,891,896	-		ABCV34_RS08875	0.42	-2.8
1,891,896	-		ABCV34_RS08875	0.42	-1.6
1,892,045	+		ABCV34_RS08875	0.54	-1.4
1,892,045	+		ABCV34_RS08875	0.54	-2.8
1,892,046	-		ABCV34_RS08875	0.54	-4.2
1,892,103	-		ABCV34_RS08875	0.59	-1.9
1,892,156	+		ABCV34_RS08875	0.63	-0.7
1,892,156	+		ABCV34_RS08875	0.63	-2.5
1,892,156	+		ABCV34_RS08875	0.63	-3.4
1,892,156	+		ABCV34_RS08875	0.63	-1.0
1,892,156	+		ABCV34_RS08875	0.63	-2.1
1,892,156	+		ABCV34_RS08875	0.63	-2.1
1,892,156	+		ABCV34_RS08875	0.63	-2.3
1,892,156	+		ABCV34_RS08875	0.63	-0.0
1,892,156	+		ABCV34_RS08875	0.63	-2.3
1,892,156	+		ABCV34_RS08875	0.63	-1.5
1,892,156	+		ABCV34_RS08875	0.63	-0.9
1,892,156	+		ABCV34_RS08875	0.63	+0.8
1,892,156	+		ABCV34_RS08875	0.63	-1.9
1,892,157	-		ABCV34_RS08875	0.63	-0.0
1,892,157	-		ABCV34_RS08875	0.63	-3.0
1,892,157	-		ABCV34_RS08875	0.63	-2.5
1,892,157	-		ABCV34_RS08875	0.63	-0.4
1,892,157	-		ABCV34_RS08875	0.63	-2.2
1,892,157	-		ABCV34_RS08875	0.63	-2.1
1,892,157	-		ABCV34_RS08875	0.63	-2.1
1,892,157	-		ABCV34_RS08875	0.63	-2.8
1,892,157	-		ABCV34_RS08875	0.63	-2.6
1,892,157	-		ABCV34_RS08875	0.63	-2.1
1,892,188	-		ABCV34_RS08875	0.66	-2.6
1,892,262	+		ABCV34_RS08875	0.72	-2.3
1,892,262	+		ABCV34_RS08875	0.72	-1.0
1,892,262	+		ABCV34_RS08875	0.72	-0.5
1,892,262	+		ABCV34_RS08875	0.72	-0.6
1,892,263	-		ABCV34_RS08875	0.72	-2.0
1,892,263	-		ABCV34_RS08875	0.72	-0.6