Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06120

Experiment: Anaerobic; Nickel (II) chloride 20 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS06115 and ABCV34_RS06120 are separated by 37 nucleotidesABCV34_RS06120 and ABCV34_RS06125 are separated by 237 nucleotides ABCV34_RS06115: ABCV34_RS06115 - hypothetical protein, at 1,321,759 to 1,322,811 _RS06115 ABCV34_RS06120: ABCV34_RS06120 - type 4 pilus major pilin, at 1,322,849 to 1,323,361 _RS06120 ABCV34_RS06125: ABCV34_RS06125 - pilus assembly protein, at 1,323,599 to 1,324,714 _RS06125 Position (kb) 1322 1323 1324Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.928 kb on + strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.929 kb on - strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.934 kb on + strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1321.935 kb on - strand, within ABCV34_RS06115at 1322.500 kb on + strand, within ABCV34_RS06115at 1322.501 kb on - strand, within ABCV34_RS06115at 1322.501 kb on - strand, within ABCV34_RS06115at 1322.917 kb on + strand, within ABCV34_RS06120at 1322.917 kb on + strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.918 kb on - strand, within ABCV34_RS06120at 1322.919 kb on + strand, within ABCV34_RS06120at 1322.920 kb on - strand, within ABCV34_RS06120at 1322.920 kb on - strand, within ABCV34_RS06120at 1322.920 kb on - strand, within ABCV34_RS06120at 1323.143 kb on + strand, within ABCV34_RS06120at 1323.143 kb on + strand, within ABCV34_RS06120at 1323.143 kb on + strand, within ABCV34_RS06120at 1323.143 kb on + strand, within ABCV34_RS06120at 1323.143 kb on + strand, within ABCV34_RS06120at 1323.144 kb on - strand, within ABCV34_RS06120at 1323.195 kb on + strand, within ABCV34_RS06120at 1323.195 kb on + strand, within ABCV34_RS06120at 1323.196 kb on - strand, within ABCV34_RS06120at 1323.196 kb on - strand, within ABCV34_RS06120at 1323.196 kb on - strand, within ABCV34_RS06120at 1323.224 kb on - strand, within ABCV34_RS06120at 1323.224 kb on - strand, within ABCV34_RS06120at 1323.232 kb on + strand, within ABCV34_RS06120at 1323.232 kb on + strand, within ABCV34_RS06120at 1323.232 kb on + strand, within ABCV34_RS06120at 1323.232 kb on + strand, within ABCV34_RS06120at 1323.232 kb on + strand, within ABCV34_RS06120at 1323.232 kb on + strand, within ABCV34_RS06120at 1323.233 kb on - strand, within ABCV34_RS06120at 1323.233 kb on - strand, within ABCV34_RS06120at 1323.233 kb on - strand, within ABCV34_RS06120at 1323.233 kb on - strand, within ABCV34_RS06120at 1323.310 kb on + strandat 1323.311 kb on - strandat 1323.311 kb on - strandat 1323.822 kb on + strand, within ABCV34_RS06125at 1323.822 kb on + strand, within ABCV34_RS06125at 1323.823 kb on - strand, within ABCV34_RS06125at 1323.828 kb on + strand, within ABCV34_RS06125at 1323.828 kb on + strand, within ABCV34_RS06125at 1323.829 kb on - strand, within ABCV34_RS06125at 1323.829 kb on - strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.901 kb on + strand, within ABCV34_RS06125at 1323.902 kb on - strand, within ABCV34_RS06125at 1323.902 kb on - strand, within ABCV34_RS06125at 1323.902 kb on - strand, within ABCV34_RS06125at 1323.902 kb on - strand, within ABCV34_RS06125at 1323.902 kb on - strand, within ABCV34_RS06125at 1323.902 kb on - strand, within ABCV34_RS06125at 1323.902 kb on - strand, within ABCV34_RS06125at 1324.045 kb on - strand, within ABCV34_RS06125at 1324.045 kb on - strand, within ABCV34_RS06125

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; Nickel (II) chloride 20 uM
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1,321,928 + ABCV34_RS06115 0.16 +0.4
1,321,928 + ABCV34_RS06115 0.16 -2.1
1,321,928 + ABCV34_RS06115 0.16 -0.4
1,321,928 + ABCV34_RS06115 0.16 -2.3
1,321,928 + ABCV34_RS06115 0.16 -1.4
1,321,928 + ABCV34_RS06115 0.16 -1.5
1,321,928 + ABCV34_RS06115 0.16 -2.4
1,321,928 + ABCV34_RS06115 0.16 -2.9
1,321,928 + ABCV34_RS06115 0.16 -1.7
1,321,928 + ABCV34_RS06115 0.16 -1.6
1,321,928 + ABCV34_RS06115 0.16 -2.7
1,321,928 + ABCV34_RS06115 0.16 -2.5
1,321,928 + ABCV34_RS06115 0.16 -2.8
1,321,928 + ABCV34_RS06115 0.16 -1.7
1,321,928 + ABCV34_RS06115 0.16 +0.1
1,321,928 + ABCV34_RS06115 0.16 -0.9
1,321,928 + ABCV34_RS06115 0.16 -2.3
1,321,928 + ABCV34_RS06115 0.16 -4.0
1,321,928 + ABCV34_RS06115 0.16 -2.1
1,321,928 + ABCV34_RS06115 0.16 -2.9
1,321,928 + ABCV34_RS06115 0.16 -2.1
1,321,928 + ABCV34_RS06115 0.16 -1.2
1,321,928 + ABCV34_RS06115 0.16 -2.0
1,321,928 + ABCV34_RS06115 0.16 -0.5
1,321,929 - ABCV34_RS06115 0.16 -3.4
1,321,929 - ABCV34_RS06115 0.16 -1.9
1,321,929 - ABCV34_RS06115 0.16 -1.8
1,321,929 - ABCV34_RS06115 0.16 -1.9
1,321,929 - ABCV34_RS06115 0.16 -1.6
1,321,929 - ABCV34_RS06115 0.16 -1.7
1,321,929 - ABCV34_RS06115 0.16 -1.7
1,321,929 - ABCV34_RS06115 0.16 -2.2
1,321,929 - ABCV34_RS06115 0.16 -1.9
1,321,929 - ABCV34_RS06115 0.16 -1.2
1,321,929 - ABCV34_RS06115 0.16 -0.5
1,321,929 - ABCV34_RS06115 0.16 -0.4
1,321,929 - ABCV34_RS06115 0.16 -2.4
1,321,929 - ABCV34_RS06115 0.16 -2.3
1,321,929 - ABCV34_RS06115 0.16 -1.7
1,321,929 - ABCV34_RS06115 0.16 -2.8
1,321,929 - ABCV34_RS06115 0.16 -1.5
1,321,929 - ABCV34_RS06115 0.16 -1.8
1,321,929 - ABCV34_RS06115 0.16 -3.0
1,321,934 + ABCV34_RS06115 0.17 -1.7
1,321,934 + ABCV34_RS06115 0.17 -2.3
1,321,934 + ABCV34_RS06115 0.17 -2.1
1,321,934 + ABCV34_RS06115 0.17 -1.2
1,321,934 + ABCV34_RS06115 0.17 -2.7
1,321,934 + ABCV34_RS06115 0.17 -1.8
1,321,934 + ABCV34_RS06115 0.17 -1.5
1,321,934 + ABCV34_RS06115 0.17 -1.3
1,321,934 + ABCV34_RS06115 0.17 -2.4
1,321,934 + ABCV34_RS06115 0.17 -2.1
1,321,934 + ABCV34_RS06115 0.17 -1.4
1,321,935 - ABCV34_RS06115 0.17 -2.9
1,321,935 - ABCV34_RS06115 0.17 -2.5
1,321,935 - ABCV34_RS06115 0.17 -2.1
1,321,935 - ABCV34_RS06115 0.17 -0.4
1,321,935 - ABCV34_RS06115 0.17 -0.3
1,321,935 - ABCV34_RS06115 0.17 -2.1
1,321,935 - ABCV34_RS06115 0.17 -2.2
1,321,935 - ABCV34_RS06115 0.17 -1.3
1,321,935 - ABCV34_RS06115 0.17 -2.3
1,322,500 + ABCV34_RS06115 0.70 -1.2
1,322,501 - ABCV34_RS06115 0.70 -1.5
1,322,501 - ABCV34_RS06115 0.70 -1.8
1,322,917 + ABCV34_RS06120 0.13 -0.9
1,322,917 + ABCV34_RS06120 0.13 +0.1
1,322,918 - ABCV34_RS06120 0.13 -2.7
1,322,918 - ABCV34_RS06120 0.13 -2.1
1,322,918 - ABCV34_RS06120 0.13 -2.4
1,322,918 - ABCV34_RS06120 0.13 -1.4
1,322,918 - ABCV34_RS06120 0.13 -2.5
1,322,918 - ABCV34_RS06120 0.13 -1.3
1,322,918 - ABCV34_RS06120 0.13 -1.9
1,322,918 - ABCV34_RS06120 0.13 -3.1
1,322,918 - ABCV34_RS06120 0.13 -1.1
1,322,919 + ABCV34_RS06120 0.14 -1.2
1,322,920 - ABCV34_RS06120 0.14 -3.1
1,322,920 - ABCV34_RS06120 0.14 -1.7
1,322,920 - ABCV34_RS06120 0.14 -2.5
1,323,143 + ABCV34_RS06120 0.57 -1.9
1,323,143 + ABCV34_RS06120 0.57 -1.5
1,323,143 + ABCV34_RS06120 0.57 -1.8
1,323,143 + ABCV34_RS06120 0.57 -2.7
1,323,143 + ABCV34_RS06120 0.57 -2.6
1,323,144 - ABCV34_RS06120 0.58 -1.8
1,323,195 + ABCV34_RS06120 0.67 -2.3
1,323,195 + ABCV34_RS06120 0.67 -1.1
1,323,196 - ABCV34_RS06120 0.68 -2.3
1,323,196 - ABCV34_RS06120 0.68 -2.7
1,323,196 - ABCV34_RS06120 0.68 -2.3
1,323,224 - ABCV34_RS06120 0.73 -2.0
1,323,224 - ABCV34_RS06120 0.73 -1.5
1,323,232 + ABCV34_RS06120 0.75 +1.1
1,323,232 + ABCV34_RS06120 0.75 -3.1
1,323,232 + ABCV34_RS06120 0.75 -2.1
1,323,232 + ABCV34_RS06120 0.75 -0.5
1,323,232 + ABCV34_RS06120 0.75 -3.3
1,323,232 + ABCV34_RS06120 0.75 -1.5
1,323,233 - ABCV34_RS06120 0.75 -2.4
1,323,233 - ABCV34_RS06120 0.75 -2.5
1,323,233 - ABCV34_RS06120 0.75 -1.6
1,323,233 - ABCV34_RS06120 0.75 -2.3
1,323,310 + -0.7
1,323,311 - -1.5
1,323,311 - -0.7
1,323,822 + ABCV34_RS06125 0.20 -2.0
1,323,822 + ABCV34_RS06125 0.20 -0.5
1,323,823 - ABCV34_RS06125 0.20 -1.0
1,323,828 + ABCV34_RS06125 0.21 -1.7
1,323,828 + ABCV34_RS06125 0.21 -2.6
1,323,829 - ABCV34_RS06125 0.21 -1.9
1,323,829 - ABCV34_RS06125 0.21 -2.2
1,323,901 + ABCV34_RS06125 0.27 -1.7
1,323,901 + ABCV34_RS06125 0.27 -1.3
1,323,901 + ABCV34_RS06125 0.27 -2.7
1,323,901 + ABCV34_RS06125 0.27 -1.9
1,323,901 + ABCV34_RS06125 0.27 -3.7
1,323,901 + ABCV34_RS06125 0.27 -2.3
1,323,901 + ABCV34_RS06125 0.27 -2.3
1,323,901 + ABCV34_RS06125 0.27 -2.6
1,323,901 + ABCV34_RS06125 0.27 -1.6
1,323,901 + ABCV34_RS06125 0.27 -1.8
1,323,902 - ABCV34_RS06125 0.27 -1.2
1,323,902 - ABCV34_RS06125 0.27 -2.9
1,323,902 - ABCV34_RS06125 0.27 -0.9
1,323,902 - ABCV34_RS06125 0.27 -2.3
1,323,902 - ABCV34_RS06125 0.27 -2.1
1,323,902 - ABCV34_RS06125 0.27 -1.9
1,323,902 - ABCV34_RS06125 0.27 -1.1
1,324,045 - ABCV34_RS06125 0.40 -2.0
1,324,045 - ABCV34_RS06125 0.40 -0.4

Or see this region's nucleotide sequence