Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18615 and LRK55_RS18620 are separated by 512 nucleotides LRK55_RS18620 and LRK55_RS18625 are separated by 562 nucleotides
LRK55_RS18615: LRK55_RS18615 - replicative DNA helicase, at 57,128 to 58,531
_RS18615
LRK55_RS18620: LRK55_RS18620 - DUF3761 domain-containing protein, at 59,044 to 59,652
_RS18620
LRK55_RS18625: LRK55_RS18625 - hypothetical protein, at 60,215 to 60,817
_RS18625
Position (kb) 59
60 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 58.133 kb on + strand, within LRK55_RS18615 at 58.134 kb on - strand, within LRK55_RS18615 at 58.134 kb on - strand, within LRK55_RS18615 at 58.354 kb on + strand, within LRK55_RS18615 at 58.354 kb on + strand, within LRK55_RS18615 at 58.355 kb on - strand, within LRK55_RS18615 at 58.355 kb on - strand, within LRK55_RS18615 at 58.355 kb on - strand, within LRK55_RS18615 at 58.355 kb on - strand, within LRK55_RS18615 at 58.355 kb on - strand, within LRK55_RS18615 at 58.355 kb on - strand, within LRK55_RS18615 at 58.358 kb on + strand, within LRK55_RS18615 at 58.358 kb on + strand, within LRK55_RS18615 at 58.371 kb on - strand, within LRK55_RS18615 at 58.373 kb on + strand, within LRK55_RS18615 at 58.373 kb on + strand, within LRK55_RS18615 at 58.373 kb on + strand, within LRK55_RS18615 at 58.374 kb on - strand, within LRK55_RS18615 at 58.374 kb on - strand, within LRK55_RS18615 at 58.529 kb on + strand at 58.529 kb on + strand at 58.530 kb on - strand at 58.530 kb on - strand at 58.605 kb on + strand at 58.606 kb on - strand at 58.608 kb on + strand at 58.608 kb on + strand at 58.608 kb on + strand at 58.608 kb on + strand at 58.608 kb on + strand at 58.608 kb on + strand at 58.609 kb on - strand at 58.609 kb on - strand at 58.609 kb on - strand at 58.609 kb on - strand at 58.637 kb on + strand at 58.637 kb on + strand at 58.638 kb on - strand at 58.638 kb on - strand at 58.638 kb on - strand at 58.638 kb on - strand at 58.638 kb on - strand at 58.675 kb on + strand at 58.675 kb on + strand at 58.675 kb on + strand at 58.675 kb on + strand at 58.748 kb on + strand at 58.748 kb on + strand at 58.748 kb on + strand at 58.748 kb on + strand at 58.748 kb on + strand at 58.749 kb on - strand at 58.749 kb on - strand at 58.749 kb on - strand at 58.749 kb on - strand at 58.841 kb on + strand at 58.906 kb on + strand at 58.906 kb on + strand at 58.906 kb on + strand at 58.907 kb on - strand at 58.907 kb on - strand at 58.907 kb on - strand at 58.907 kb on - strand at 58.909 kb on + strand at 58.909 kb on + strand at 58.909 kb on + strand at 58.909 kb on + strand at 58.909 kb on + strand at 58.909 kb on + strand at 58.909 kb on + strand at 58.909 kb on + strand at 58.909 kb on + strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.910 kb on - strand at 58.927 kb on + strand at 58.927 kb on + strand at 58.934 kb on - strand at 58.934 kb on - strand at 58.957 kb on + strand at 59.039 kb on + strand at 59.040 kb on - strand at 59.055 kb on + strand at 59.091 kb on - strand at 59.098 kb on - strand at 59.098 kb on - strand at 59.098 kb on - strand at 59.098 kb on - strand at 59.100 kb on + strand at 59.100 kb on + strand at 59.100 kb on + strand at 59.101 kb on - strand at 59.101 kb on - strand at 59.117 kb on + strand, within LRK55_RS18620 at 59.279 kb on - strand, within LRK55_RS18620 at 59.369 kb on + strand, within LRK55_RS18620 at 59.370 kb on - strand, within LRK55_RS18620 at 59.422 kb on + strand, within LRK55_RS18620 at 59.422 kb on + strand, within LRK55_RS18620 at 59.422 kb on + strand, within LRK55_RS18620 at 59.423 kb on - strand, within LRK55_RS18620 at 59.423 kb on - strand, within LRK55_RS18620 at 59.467 kb on + strand, within LRK55_RS18620 at 59.522 kb on + strand, within LRK55_RS18620 at 59.667 kb on + strand at 59.697 kb on + strand at 59.698 kb on - strand at 59.698 kb on - strand at 59.698 kb on - strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.710 kb on - strand at 59.710 kb on - strand at 59.710 kb on - strand at 59.711 kb on + strand at 59.711 kb on + strand at 59.712 kb on - strand at 59.712 kb on - strand at 59.723 kb on - strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.752 kb on - strand at 59.752 kb on - strand at 59.752 kb on - strand at 59.752 kb on - strand at 59.759 kb on - strand at 59.859 kb on + strand at 59.859 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.913 kb on + strand at 59.977 kb on + strand at 59.978 kb on - strand at 59.978 kb on - strand at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.560 kb on + strand, within LRK55_RS18625
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 58,133 + LRK55_RS18615 0.72 +1.9 58,134 - LRK55_RS18615 0.72 -1.9 58,134 - LRK55_RS18615 0.72 -0.0 58,354 + LRK55_RS18615 0.87 -0.2 58,354 + LRK55_RS18615 0.87 +0.3 58,355 - LRK55_RS18615 0.87 +0.3 58,355 - LRK55_RS18615 0.87 +0.6 58,355 - LRK55_RS18615 0.87 +0.8 58,355 - LRK55_RS18615 0.87 +1.5 58,355 - LRK55_RS18615 0.87 +0.7 58,355 - LRK55_RS18615 0.87 -1.5 58,358 + LRK55_RS18615 0.88 +0.6 58,358 + LRK55_RS18615 0.88 +0.7 58,371 - LRK55_RS18615 0.89 +1.7 58,373 + LRK55_RS18615 0.89 -0.0 58,373 + LRK55_RS18615 0.89 +0.5 58,373 + LRK55_RS18615 0.89 -1.3 58,374 - LRK55_RS18615 0.89 +1.7 58,374 - LRK55_RS18615 0.89 +0.1 58,529 + +1.1 58,529 + +1.8 58,530 - +0.5 58,530 - +1.3 58,605 + +1.9 58,606 - -0.6 58,608 + -0.6 58,608 + +0.2 58,608 + -1.9 58,608 + +1.7 58,608 + +0.0 58,608 + +0.9 58,609 - -0.1 58,609 - -1.1 58,609 - -3.9 58,609 - -1.8 58,637 + +0.4 58,637 + +1.3 58,638 - +0.4 58,638 - -1.5 58,638 - -0.7 58,638 - -1.3 58,638 - +0.3 58,675 + +0.8 58,675 + +1.3 58,675 + -1.4 58,675 + +0.5 58,748 + +0.8 58,748 + +1.3 58,748 + +1.2 58,748 + -1.3 58,748 + -1.6 58,749 - +1.4 58,749 - -0.8 58,749 - +0.1 58,749 - +1.2 58,841 + +0.4 58,906 + -1.2 58,906 + +1.3 58,906 + -0.7 58,907 - -1.9 58,907 - -0.5 58,907 - +2.3 58,907 - -1.5 58,909 + -2.5 58,909 + +0.8 58,909 + +0.4 58,909 + -1.6 58,909 + +1.3 58,909 + +1.1 58,909 + +0.1 58,909 + -2.2 58,909 + -0.1 58,910 - -1.6 58,910 - -0.8 58,910 - -3.5 58,910 - +1.0 58,910 - +0.9 58,910 - +1.2 58,910 - +0.7 58,910 - -2.3 58,910 - -1.3 58,910 - +0.1 58,927 + -2.2 58,927 + -0.8 58,934 - +0.3 58,934 - +0.9 58,957 + -1.6 59,039 + +0.3 59,040 - -0.7 59,055 + -2.7 59,091 - +1.1 59,098 - +1.8 59,098 - +0.3 59,098 - -1.3 59,098 - -2.4 59,100 + +0.7 59,100 + +0.4 59,100 + -1.8 59,101 - +0.2 59,101 - +2.0 59,117 + LRK55_RS18620 0.12 +1.4 59,279 - LRK55_RS18620 0.39 +2.1 59,369 + LRK55_RS18620 0.53 +0.9 59,370 - LRK55_RS18620 0.54 +1.8 59,422 + LRK55_RS18620 0.62 +0.3 59,422 + LRK55_RS18620 0.62 -0.1 59,422 + LRK55_RS18620 0.62 -1.7 59,423 - LRK55_RS18620 0.62 +1.5 59,423 - LRK55_RS18620 0.62 +1.4 59,467 + LRK55_RS18620 0.69 -3.1 59,522 + LRK55_RS18620 0.78 -0.6 59,667 + +1.2 59,697 + +2.4 59,698 - +1.3 59,698 - +1.2 59,698 - +1.1 59,709 + -0.2 59,709 + -1.9 59,709 + +2.0 59,709 + +0.6 59,710 - +1.3 59,710 - -2.8 59,710 - -1.7 59,711 + -3.5 59,711 + -0.1 59,712 - +1.4 59,712 - -0.3 59,723 - +1.1 59,751 + -1.3 59,751 + -0.4 59,751 + +2.2 59,751 + +0.1 59,751 + +0.7 59,751 + -2.5 59,752 - +1.7 59,752 - -2.8 59,752 - +2.4 59,752 - +0.2 59,759 - -0.3 59,859 + +0.1 59,859 + -2.3 59,911 + -0.4 59,911 + +2.4 59,911 + -0.2 59,911 + -0.1 59,911 + +2.1 59,911 + -1.1 59,913 + +1.0 59,977 + +1.2 59,978 - -0.2 59,978 - -0.8 60,287 + LRK55_RS18625 0.12 +1.4 60,287 + LRK55_RS18625 0.12 -3.0 60,287 + LRK55_RS18625 0.12 -1.9 60,287 + LRK55_RS18625 0.12 +1.0 60,287 + LRK55_RS18625 0.12 -1.7 60,287 + LRK55_RS18625 0.12 -0.1 60,287 + LRK55_RS18625 0.12 -1.7 60,287 + LRK55_RS18625 0.12 -2.2 60,287 + LRK55_RS18625 0.12 +0.6 60,288 - LRK55_RS18625 0.12 +3.4 60,288 - LRK55_RS18625 0.12 -2.1 60,288 - LRK55_RS18625 0.12 +0.7 60,288 - LRK55_RS18625 0.12 +2.5 60,288 - LRK55_RS18625 0.12 -0.0 60,288 - LRK55_RS18625 0.12 -2.1 60,288 - LRK55_RS18625 0.12 +1.3 60,288 - LRK55_RS18625 0.12 -0.7 60,288 - LRK55_RS18625 0.12 +1.3 60,288 - LRK55_RS18625 0.12 -0.2 60,288 - LRK55_RS18625 0.12 -4.2 60,347 + LRK55_RS18625 0.22 +0.4 60,347 + LRK55_RS18625 0.22 +2.2 60,347 + LRK55_RS18625 0.22 +0.2 60,347 + LRK55_RS18625 0.22 +1.9 60,347 + LRK55_RS18625 0.22 +0.7 60,347 + LRK55_RS18625 0.22 -0.9 60,347 + LRK55_RS18625 0.22 +1.1 60,347 + LRK55_RS18625 0.22 -3.3 60,347 + LRK55_RS18625 0.22 -2.3 60,348 - LRK55_RS18625 0.22 -0.0 60,348 - LRK55_RS18625 0.22 +4.2 60,348 - LRK55_RS18625 0.22 -0.9 60,348 - LRK55_RS18625 0.22 -3.3 60,348 - LRK55_RS18625 0.22 -1.4 60,348 - LRK55_RS18625 0.22 +0.3 60,348 - LRK55_RS18625 0.22 +1.0 60,348 - LRK55_RS18625 0.22 -0.7 60,348 - LRK55_RS18625 0.22 +1.0 60,348 - LRK55_RS18625 0.22 -1.9 60,348 - LRK55_RS18625 0.22 -2.1 60,348 - LRK55_RS18625 0.22 -1.6 60,560 + LRK55_RS18625 0.57 -0.1
Or see this region's nucleotide sequence