Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS17985

Experiment: R2A_PIPES pH 4.25

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.25
3,900,639	+		LRK55_RS17980	0.43	+2.0
3,900,639	+		LRK55_RS17980	0.43	-0.5
3,900,640	-		LRK55_RS17980	0.43	+0.8
3,900,640	-		LRK55_RS17980	0.43	-0.2
3,900,640	-		LRK55_RS17980	0.43	-2.5
3,900,640	-		LRK55_RS17980	0.43	-1.8
3,900,640	-		LRK55_RS17980	0.43	+0.8
3,900,640	-		LRK55_RS17980	0.43	-0.5
3,900,714	+		LRK55_RS17980	0.48	+0.2
3,900,714	+		LRK55_RS17980	0.48	-0.8
3,900,839	+		LRK55_RS17980	0.56	-1.0
3,900,840	+		LRK55_RS17980	0.56	+1.5
3,900,888	+		LRK55_RS17980	0.59	-1.4
3,900,888	+		LRK55_RS17980	0.59	-0.2
3,900,889	-		LRK55_RS17980	0.59	+0.4
3,900,889	-		LRK55_RS17980	0.59	+2.9
3,900,889	-		LRK55_RS17980	0.59	-1.6
3,900,969	+		LRK55_RS17980	0.64	+1.2
3,901,044	+		LRK55_RS17980	0.69	+0.5
3,901,044	+		LRK55_RS17980	0.69	+2.3
3,901,044	+		LRK55_RS17980	0.69	-0.5
3,901,044	+		LRK55_RS17980	0.69	+1.0
3,901,044	+		LRK55_RS17980	0.69	+1.3
3,901,044	+		LRK55_RS17980	0.69	+1.2
3,901,045	-		LRK55_RS17980	0.69	+0.2
3,901,045	-		LRK55_RS17980	0.69	+2.8
3,901,045	-		LRK55_RS17980	0.69	-0.2
3,901,045	-		LRK55_RS17980	0.69	+1.8
3,901,045	-		LRK55_RS17980	0.69	+3.3
3,901,045	-		LRK55_RS17980	0.69	-1.4
3,901,045	-		LRK55_RS17980	0.69	+1.2
3,901,045	-		LRK55_RS17980	0.69	+2.0
3,901,080	+		LRK55_RS17980	0.71	-2.7
3,901,080	+		LRK55_RS17980	0.71	+0.6
3,901,080	+		LRK55_RS17980	0.71	+1.5
3,901,081	-		LRK55_RS17980	0.71	+1.1
3,901,081	-		LRK55_RS17980	0.71	-1.2
3,901,081	-		LRK55_RS17980	0.71	+1.0
3,901,081	-		LRK55_RS17980	0.71	+0.9
3,901,081	-		LRK55_RS17980	0.71	+1.2
3,901,101	+		LRK55_RS17980	0.73	+0.2
3,901,101	+		LRK55_RS17980	0.73	+2.0
3,901,101	+		LRK55_RS17980	0.73	+2.4
3,901,101	+		LRK55_RS17980	0.73	-2.0
3,901,101	+		LRK55_RS17980	0.73	+0.3
3,901,102	-		LRK55_RS17980	0.73	-1.4
3,901,102	-		LRK55_RS17980	0.73	+2.3
3,901,102	-		LRK55_RS17980	0.73	-3.0
3,901,102	-		LRK55_RS17980	0.73	+0.6
3,901,102	-		LRK55_RS17980	0.73	+1.5
3,901,102	-		LRK55_RS17980	0.73	-1.2
3,901,102	-		LRK55_RS17980	0.73	-0.2
3,901,102	-		LRK55_RS17980	0.73	-1.9
3,901,119	+		LRK55_RS17980	0.74	-3.5
3,901,119	+		LRK55_RS17980	0.74	+2.2
3,901,119	+		LRK55_RS17980	0.74	+0.5
3,901,119	+		LRK55_RS17980	0.74	+1.7
3,901,119	+		LRK55_RS17980	0.74	+0.4
3,901,119	+		LRK55_RS17980	0.74	-0.8
3,901,119	+		LRK55_RS17980	0.74	-0.3
3,901,119	+		LRK55_RS17980	0.74	-2.8
3,901,119	+		LRK55_RS17980	0.74	+0.1
3,901,119	+		LRK55_RS17980	0.74	+1.2
3,901,119	+		LRK55_RS17980	0.74	+1.4
3,901,119	+		LRK55_RS17980	0.74	+1.5
3,901,119	+		LRK55_RS17980	0.74	-0.7
3,901,119	+		LRK55_RS17980	0.74	-2.4
3,901,119	+		LRK55_RS17980	0.74	+0.8
3,901,120	-		LRK55_RS17980	0.74	+0.3
3,901,120	-		LRK55_RS17980	0.74	-0.2
3,901,120	-		LRK55_RS17980	0.74	+1.8
3,901,120	-		LRK55_RS17980	0.74	+2.1
3,901,120	-		LRK55_RS17980	0.74	+1.2
3,901,120	-		LRK55_RS17980	0.74	+1.5
3,901,120	-		LRK55_RS17980	0.74	-0.5
3,901,120	-		LRK55_RS17980	0.74	-2.7
3,901,120	-		LRK55_RS17980	0.74	-2.1
3,901,120	-		LRK55_RS17980	0.74	-2.2
3,901,120	-		LRK55_RS17980	0.74	-0.3
3,901,120	-		LRK55_RS17980	0.74	+0.4
3,901,120	-		LRK55_RS17980	0.74	+1.6
3,901,120	-		LRK55_RS17980	0.74	+1.9
3,901,120	-		LRK55_RS17980	0.74	-1.2
3,901,120	-		LRK55_RS17980	0.74	+0.5
3,901,120	-		LRK55_RS17980	0.74	-2.6
3,901,120	-		LRK55_RS17980	0.74	+0.8
3,901,120	-		LRK55_RS17980	0.74	+2.1
3,901,120	-		LRK55_RS17980	0.74	+1.4
3,901,120	-		LRK55_RS17980	0.74	-0.2
3,901,356	+		LRK55_RS17980	0.89	+0.7
3,901,356	+		LRK55_RS17980	0.89	+0.5
3,901,356	+		LRK55_RS17980	0.89	+1.8
3,901,356	+		LRK55_RS17980	0.89	-0.0
3,901,356	+		LRK55_RS17980	0.89	-0.8
3,901,357	-		LRK55_RS17980	0.89	-2.1
3,901,357	-		LRK55_RS17980	0.89	+1.0
3,901,357	-		LRK55_RS17980	0.89	+3.0
3,901,540	+				-1.3
3,901,541	-				+1.2
3,901,669	-				+1.7
3,901,678	+				-1.7
3,901,921	+		LRK55_RS17985	0.24	-1.0
3,901,921	+		LRK55_RS17985	0.24	+1.9
3,901,922	-		LRK55_RS17985	0.24	-1.4
3,901,922	-		LRK55_RS17985	0.24	+1.5
3,901,922	-		LRK55_RS17985	0.24	-2.0
3,901,922	-		LRK55_RS17985	0.24	+0.7
3,901,922	-		LRK55_RS17985	0.24	-1.8
3,902,036	+		LRK55_RS17985	0.33	+1.2
3,902,037	-		LRK55_RS17985	0.33	-0.7
3,902,037	-		LRK55_RS17985	0.33	+1.0
3,902,165	+		LRK55_RS17985	0.43	+0.8
3,902,243	+		LRK55_RS17985	0.49	-1.8
3,902,447	+		LRK55_RS17985	0.64	-2.9
3,902,447	+		LRK55_RS17985	0.64	-1.9
3,902,447	+		LRK55_RS17985	0.64	+0.5
3,902,447	+		LRK55_RS17985	0.64	+0.0
3,902,447	+		LRK55_RS17985	0.64	+2.4
3,902,447	+		LRK55_RS17985	0.64	-0.8
3,902,447	+		LRK55_RS17985	0.64	+0.8
3,902,447	+		LRK55_RS17985	0.64	-0.2
3,902,448	-		LRK55_RS17985	0.64	+0.7
3,902,448	-		LRK55_RS17985	0.64	-0.8
3,902,448	-		LRK55_RS17985	0.64	-2.0
3,902,448	-		LRK55_RS17985	0.64	+0.3
3,902,448	-		LRK55_RS17985	0.64	-2.2
3,902,448	-		LRK55_RS17985	0.64	-2.1
3,902,448	-		LRK55_RS17985	0.64	-0.4
3,902,448	-		LRK55_RS17985	0.64	-3.3
3,902,448	-		LRK55_RS17985	0.64	+1.9
3,902,448	-		LRK55_RS17985	0.64	-1.3
3,902,448	-		LRK55_RS17985	0.64	-0.6
3,902,573	+		LRK55_RS17985	0.74	-0.8
3,902,573	+		LRK55_RS17985	0.74	+1.5
3,902,573	+		LRK55_RS17985	0.74	+0.4
3,902,573	+		LRK55_RS17985	0.74	-0.4
3,902,573	+		LRK55_RS17985	0.74	-0.5
3,902,573	+		LRK55_RS17985	0.74	+0.9
3,902,573	+		LRK55_RS17985	0.74	+3.1
3,902,573	+		LRK55_RS17985	0.74	-1.8
3,902,573	+		LRK55_RS17985	0.74	+0.3
3,902,573	+		LRK55_RS17985	0.74	+2.1
3,902,573	+		LRK55_RS17985	0.74	+0.8
3,902,573	+		LRK55_RS17985	0.74	+2.6
3,902,574	-		LRK55_RS17985	0.74	+1.4
3,902,574	-		LRK55_RS17985	0.74	-3.3
3,902,574	-		LRK55_RS17985	0.74	+2.0
3,902,574	-		LRK55_RS17985	0.74	+2.0
3,902,574	-		LRK55_RS17985	0.74	-2.5
3,902,837	+				+0.3
3,902,837	+				+1.9
3,902,837	+				-1.2
3,902,837	+				+0.5
3,902,837	+				+2.5
3,902,837	+				-1.0
3,902,837	+				+1.3
3,902,837	+				+3.5
3,902,837	+				+0.1
3,902,837	+				+0.7
3,902,837	+				+1.4
3,902,837	+				-0.2
3,902,837	+				-0.5
3,902,837	+				+1.1
3,902,837	+				+1.4
3,902,837	+				+1.7
3,902,837	+				-0.1
3,902,837	+				-1.7
3,902,837	+				-1.2
3,902,837	+				+0.4
3,902,837	+				+0.8
3,902,837	+				-0.5
3,902,837	+				-0.0
3,902,837	+				+0.6
3,902,837	+				+1.7
3,902,837	+				+0.7
3,902,837	+				-2.5
3,902,837	+				-0.7
3,902,837	+				+2.0
3,902,837	+				+0.2
3,902,837	+				-1.3
3,902,837	+				-0.0
3,902,837	+				-1.8
3,902,837	+				-0.3
3,902,837	+				+0.7
3,902,837	+				+1.1
3,902,837	+				+0.9
3,902,837	+				+3.0
3,902,837	+				-0.1
3,902,837	+				-1.7
3,902,837	+				+3.1
3,902,837	+				+1.0
3,902,837	+				+0.6
3,902,837	+				+2.2
3,902,838	-				-1.7
3,902,838	-				+1.3
3,902,838	-				-0.6
3,902,838	-				+0.3
3,902,838	-				+1.0
3,902,838	-				-1.4
3,902,838	-				-1.2
3,902,838	-				+0.4
3,902,838	-				+0.1
3,902,838	-				+1.2
3,902,838	-				-2.1
3,902,838	-				-1.2
3,902,838	-				+3.2
3,902,838	-				-0.5
3,902,838	-				+2.9
3,902,838	-				+0.8
3,902,838	-				-0.2
3,902,838	-				+1.5
3,902,838	-				-0.3
3,902,838	-				+0.6
3,902,838	-				+0.4
3,902,838	-				+0.3
3,902,838	-				-1.9
3,902,838	-				-1.4
3,902,838	-				+0.4
3,902,838	-				+0.8
3,902,838	-				-1.7
3,902,838	-				+1.8
3,902,838	-				+4.2
3,902,838	-				+0.9
3,902,838	-				-1.0
3,902,838	-				-1.7
3,902,838	-				+0.5
3,902,838	-				-1.5
3,902,838	-				+1.9
3,902,838	-				+0.6
3,902,838	-				+0.4
3,902,838	-				-1.7
3,902,838	-				-1.2
3,902,838	-				-0.9
3,902,838	-				+1.1
3,902,838	-				-0.5
3,902,838	-				+0.7
3,902,838	-				+1.2
3,902,838	-				-0.6
3,902,838	-				-0.9
3,902,838	-				-0.9
3,903,115	-				-1.4
3,903,180	+		LRK55_RS17990	0.20	+1.4
3,903,181	-		LRK55_RS17990	0.20	+0.6
3,903,181	-		LRK55_RS17990	0.20	-0.1
3,903,181	-		LRK55_RS17990	0.20	-0.3
3,903,216	+		LRK55_RS17990	0.29	-2.4
3,903,216	+		LRK55_RS17990	0.29	-1.5
3,903,216	+		LRK55_RS17990	0.29	+0.9
3,903,216	+		LRK55_RS17990	0.29	-1.9
3,903,216	+		LRK55_RS17990	0.29	+1.0
3,903,216	+		LRK55_RS17990	0.29	-1.1
3,903,216	+		LRK55_RS17990	0.29	+0.1
3,903,216	+		LRK55_RS17990	0.29	-1.4
3,903,217	-		LRK55_RS17990	0.29	-1.2
3,903,217	-		LRK55_RS17990	0.29	+1.2
3,903,217	-		LRK55_RS17990	0.29	-2.5
3,903,303	+		LRK55_RS17990	0.51	+2.9
3,903,303	+		LRK55_RS17990	0.51	+0.9
3,903,303	+		LRK55_RS17990	0.51	-0.3
3,903,304	-		LRK55_RS17990	0.51	-0.2
3,903,304	-		LRK55_RS17990	0.51	+1.3
3,903,363	+		LRK55_RS17990	0.65	+0.1
3,903,363	+		LRK55_RS17990	0.65	-0.5
3,903,364	-		LRK55_RS17990	0.66	-1.0
3,903,488	+				-1.1
3,903,488	+				+1.3
3,903,488	+				-0.5
3,903,488	+				+0.2
3,903,488	+				+0.9
3,903,489	-				+1.5
3,903,489	-				-0.3
3,903,489	-				+1.4
3,903,489	-				+2.2
3,903,532	-				+1.4
3,903,532	-				+2.5
3,903,612	+				-1.7
3,903,612	+				-0.4
3,903,612	+				+0.7
3,903,612	+				+1.9
3,903,612	+				+0.3
3,903,612	+				+1.5
3,903,612	+				+2.1
3,903,612	+				+0.1
3,903,612	+				-0.5
3,903,613	-				+0.7
3,903,613	-				-1.8
3,903,613	-				-2.1
3,903,613	-				+2.1
3,903,613	-				-3.1
3,903,613	-				+0.7
3,903,613	-				-0.7
3,903,613	-				+1.0
3,903,613	-				+1.0
3,903,613	-				+0.4