Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS17440

Experiment: R2A_PIPES pH 4.25

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.25
3,787,126	+		LRK55_RS17430	0.70	+3.6
3,787,126	+		LRK55_RS17430	0.70	+1.9
3,787,127	-		LRK55_RS17430	0.71	-1.2
3,787,127	-		LRK55_RS17430	0.71	+3.3
3,787,174	+		LRK55_RS17430	0.73	+0.4
3,787,174	+		LRK55_RS17430	0.73	-1.8
3,787,174	+		LRK55_RS17430	0.73	-0.6
3,787,175	-		LRK55_RS17430	0.73	+0.3
3,787,175	-		LRK55_RS17430	0.73	+1.2
3,787,175	-		LRK55_RS17430	0.73	+2.1
3,787,175	-		LRK55_RS17430	0.73	-0.2
3,787,175	-		LRK55_RS17430	0.73	-2.1
3,787,175	-		LRK55_RS17430	0.73	+1.8
3,787,175	-		LRK55_RS17430	0.73	+1.6
3,787,175	-		LRK55_RS17430	0.73	+1.5
3,787,315	+		LRK55_RS17430	0.79	+2.2
3,787,315	+		LRK55_RS17430	0.79	+2.8
3,787,315	+		LRK55_RS17430	0.79	-0.6
3,787,315	+		LRK55_RS17430	0.79	-1.4
3,787,316	-		LRK55_RS17430	0.79	+1.3
3,787,316	-		LRK55_RS17430	0.79	-1.2
3,787,402	+		LRK55_RS17430	0.83	+3.3
3,787,402	+		LRK55_RS17430	0.83	+0.1
3,787,403	-		LRK55_RS17430	0.83	+2.3
3,787,403	-		LRK55_RS17430	0.83	+1.5
3,787,403	-		LRK55_RS17430	0.83	+3.0
3,787,403	-		LRK55_RS17430	0.83	+0.9
3,787,403	-		LRK55_RS17430	0.83	-2.9
3,787,403	-		LRK55_RS17430	0.83	-0.6
3,787,417	+		LRK55_RS17430	0.83	+2.1
3,787,417	+		LRK55_RS17430	0.83	+0.8
3,787,417	+		LRK55_RS17430	0.83	-0.4
3,787,417	+		LRK55_RS17430	0.83	+2.9
3,787,417	+		LRK55_RS17430	0.83	+2.7
3,787,417	+		LRK55_RS17430	0.83	+1.5
3,787,417	+		LRK55_RS17430	0.83	-1.1
3,787,418	-		LRK55_RS17430	0.83	+1.3
3,787,418	-		LRK55_RS17430	0.83	+1.3
3,787,418	-		LRK55_RS17430	0.83	+3.0
3,787,418	-		LRK55_RS17430	0.83	+0.3
3,787,418	-		LRK55_RS17430	0.83	-1.9
3,787,418	-		LRK55_RS17430	0.83	+1.0
3,787,562	+		LRK55_RS17430	0.90	+3.5
3,787,563	-		LRK55_RS17430	0.90	+2.7
3,787,784	-				+1.5
3,787,784	-				+1.3
3,787,879	+		LRK55_RS17435	0.37	+1.4
3,787,879	+		LRK55_RS17435	0.37	+0.3
3,787,879	+		LRK55_RS17435	0.37	+1.5
3,787,879	+		LRK55_RS17435	0.37	+2.3
3,787,879	+		LRK55_RS17435	0.37	-1.2
3,787,879	+		LRK55_RS17435	0.37	+1.8
3,787,880	-		LRK55_RS17435	0.37	+0.1
3,787,880	-		LRK55_RS17435	0.37	+1.3
3,787,947	-		LRK55_RS17435	0.65	+0.2
3,787,947	-		LRK55_RS17435	0.65	-1.4
3,787,986	+		LRK55_RS17435	0.81	-1.8
3,788,053	+				-1.7
3,788,053	+				+1.8
3,788,053	+				+3.7
3,788,053	+				+2.4
3,788,053	+				+1.4
3,788,053	+				+2.5
3,788,053	+				+0.7
3,788,053	+				+2.5
3,788,054	-				+2.2
3,788,054	-				+2.3
3,788,054	-				+4.2
3,788,054	-				-0.2
3,788,054	-				+3.6
3,788,059	+				+3.0
3,788,059	+				+2.5
3,788,059	+				+2.3
3,788,059	+				+2.3
3,788,059	+				-1.4
3,788,059	+				+4.4
3,788,059	+				+0.0
3,788,059	+				+1.8
3,788,059	+				+1.3
3,788,060	-				+3.6
3,788,060	-				+0.8
3,788,060	-				+1.8
3,788,060	-				-1.2
3,788,060	-				+3.2
3,788,060	-				-1.1
3,788,060	-				+1.8
3,788,320	+		LRK55_RS17440	0.33	+0.6
3,788,320	+		LRK55_RS17440	0.33	+4.9
3,788,320	+		LRK55_RS17440	0.33	+1.3
3,788,320	+		LRK55_RS17440	0.33	+1.6
3,788,320	+		LRK55_RS17440	0.33	+0.1
3,788,320	+		LRK55_RS17440	0.33	+1.3
3,788,320	+		LRK55_RS17440	0.33	+1.9
3,788,320	+		LRK55_RS17440	0.33	+1.6
3,788,321	-		LRK55_RS17440	0.34	+3.1
3,788,321	-		LRK55_RS17440	0.34	+2.1
3,788,321	-		LRK55_RS17440	0.34	-1.4
3,788,428	+		LRK55_RS17440	0.45	-0.3
3,788,428	+		LRK55_RS17440	0.45	-1.8
3,788,523	+		LRK55_RS17440	0.56	-1.4
3,788,523	+		LRK55_RS17440	0.56	+2.5
3,788,523	+		LRK55_RS17440	0.56	+0.4
3,788,523	+		LRK55_RS17440	0.56	-2.0
3,788,523	+		LRK55_RS17440	0.56	-0.2
3,788,523	+		LRK55_RS17440	0.56	-2.3
3,788,524	-		LRK55_RS17440	0.56	+2.0
3,788,524	-		LRK55_RS17440	0.56	+2.6
3,788,524	-		LRK55_RS17440	0.56	+2.9
3,788,524	-		LRK55_RS17440	0.56	+3.6
3,788,524	-		LRK55_RS17440	0.56	-0.8
3,788,524	-		LRK55_RS17440	0.56	+2.7
3,788,524	-		LRK55_RS17440	0.56	+2.2
3,788,524	-		LRK55_RS17440	0.56	+1.3
3,788,524	-		LRK55_RS17440	0.56	+4.4
3,788,524	-		LRK55_RS17440	0.56	+3.0
3,788,524	-		LRK55_RS17440	0.56	+2.0
3,788,524	-		LRK55_RS17440	0.56	-0.1
3,788,575	+		LRK55_RS17440	0.61	+1.2
3,788,576	-		LRK55_RS17440	0.62	+0.7
3,788,664	+		LRK55_RS17440	0.71	-1.4
3,788,664	+		LRK55_RS17440	0.71	-1.2
3,788,664	+		LRK55_RS17440	0.71	-2.1
3,788,664	+		LRK55_RS17440	0.71	+0.5
3,788,664	+		LRK55_RS17440	0.71	+2.9
3,788,665	-		LRK55_RS17440	0.71	+1.9
3,788,704	+		LRK55_RS17440	0.76	+0.2
3,788,704	+		LRK55_RS17440	0.76	-1.6
3,788,704	+		LRK55_RS17440	0.76	-1.0
3,788,704	+		LRK55_RS17440	0.76	-1.2
3,788,704	+		LRK55_RS17440	0.76	+3.1
3,788,704	+		LRK55_RS17440	0.76	+1.0
3,788,704	+		LRK55_RS17440	0.76	+2.9
3,788,704	+		LRK55_RS17440	0.76	+0.2
3,788,705	-		LRK55_RS17440	0.76	+4.1
3,788,705	-		LRK55_RS17440	0.76	+3.9
3,788,705	-		LRK55_RS17440	0.76	+4.6
3,788,705	-		LRK55_RS17440	0.76	+3.1
3,788,705	-		LRK55_RS17440	0.76	+5.0
3,788,705	-		LRK55_RS17440	0.76	+3.0
3,788,705	-		LRK55_RS17440	0.76	+1.8
3,788,705	-		LRK55_RS17440	0.76	+2.3
3,788,705	-		LRK55_RS17440	0.76	+2.1
3,788,705	-		LRK55_RS17440	0.76	+2.9
3,788,705	-		LRK55_RS17440	0.76	+2.0
3,788,705	-		LRK55_RS17440	0.76	+2.2
3,788,705	-		LRK55_RS17440	0.76	-1.2
3,788,854	+				-1.7
3,788,854	+				+1.6
3,788,854	+				+2.5
3,788,854	+				+2.8
3,788,854	+				+1.4
3,788,855	-				+2.9
3,788,855	-				+3.5
3,788,855	-				+2.1
3,788,886	+				-1.9
3,788,886	+				-2.4
3,788,886	+				+1.5
3,788,886	+				-2.8
3,788,887	-				+0.0
3,788,887	-				+0.2
3,789,003	+		LRK55_RS17445	0.45	+3.1
3,789,003	+		LRK55_RS17445	0.45	+1.7
3,789,003	+		LRK55_RS17445	0.45	-1.7
3,789,003	+		LRK55_RS17445	0.45	+3.3
3,789,004	-		LRK55_RS17445	0.45	+3.2
3,789,004	-		LRK55_RS17445	0.45	+1.6
3,789,004	-		LRK55_RS17445	0.45	+1.4
3,789,004	-		LRK55_RS17445	0.45	+1.8
3,789,004	-		LRK55_RS17445	0.45	+2.1
3,789,004	-		LRK55_RS17445	0.45	+0.7
3,789,004	-		LRK55_RS17445	0.45	+1.4
3,789,004	-		LRK55_RS17445	0.45	+0.2
3,789,185	+		LRK55_RS17450	0.13	+2.0
3,789,185	+		LRK55_RS17450	0.13	+1.1
3,789,185	+		LRK55_RS17450	0.13	+2.1
3,789,186	-		LRK55_RS17450	0.13	+1.8
3,789,186	-		LRK55_RS17450	0.13	+3.7
3,789,257	+		LRK55_RS17450	0.24	-3.2
3,789,258	-		LRK55_RS17450	0.24	+2.1
3,789,410	+		LRK55_RS17450	0.47	+2.0
3,789,410	+		LRK55_RS17450	0.47	+1.8
3,789,410	+		LRK55_RS17450	0.47	+2.8
3,789,410	+		LRK55_RS17450	0.47	+0.8
3,789,411	-		LRK55_RS17450	0.47	+4.2
3,789,411	-		LRK55_RS17450	0.47	+0.5
3,789,411	-		LRK55_RS17450	0.47	+2.2
3,789,411	-		LRK55_RS17450	0.47	+0.4
3,789,411	-		LRK55_RS17450	0.47	-0.0
3,789,411	-		LRK55_RS17450	0.47	+1.9
3,789,411	-		LRK55_RS17450	0.47	-0.1
3,789,411	-		LRK55_RS17450	0.47	-1.4
3,789,476	+		LRK55_RS17450	0.57	+1.5
3,789,476	+		LRK55_RS17450	0.57	+3.4
3,789,476	+		LRK55_RS17450	0.57	-0.5
3,789,476	+		LRK55_RS17450	0.57	+1.0
3,789,477	-		LRK55_RS17450	0.57	+0.7
3,789,477	-		LRK55_RS17450	0.57	+2.4
3,789,509	+		LRK55_RS17450	0.62	+2.2
3,789,509	+		LRK55_RS17450	0.62	-0.1
3,789,560	+		LRK55_RS17450	0.69	+0.2
3,789,560	+		LRK55_RS17450	0.69	+0.5
3,789,560	+		LRK55_RS17450	0.69	-0.2
3,789,560	+		LRK55_RS17450	0.69	+0.1
3,789,561	-		LRK55_RS17450	0.70	+4.2
3,789,561	-		LRK55_RS17450	0.70	+0.8
3,789,561	-		LRK55_RS17450	0.70	+0.0
3,789,561	-		LRK55_RS17450	0.70	+2.3
3,789,561	-		LRK55_RS17450	0.70	+2.4
3,789,561	-		LRK55_RS17450	0.70	-2.6
3,789,578	+		LRK55_RS17450	0.72	+1.4
3,789,578	+		LRK55_RS17450	0.72	-1.4
3,789,578	+		LRK55_RS17450	0.72	+1.1
3,789,578	+		LRK55_RS17450	0.72	+1.8
3,789,578	+		LRK55_RS17450	0.72	+0.1
3,789,579	-		LRK55_RS17450	0.72	-0.7
3,789,579	-		LRK55_RS17450	0.72	+1.8
3,789,579	-		LRK55_RS17450	0.72	+2.9
3,789,579	-		LRK55_RS17450	0.72	-2.0
3,789,579	-		LRK55_RS17450	0.72	+2.1
3,789,579	-		LRK55_RS17450	0.72	+3.0
3,789,579	-		LRK55_RS17450	0.72	+1.0
3,789,579	-		LRK55_RS17450	0.72	+2.1
3,789,579	-		LRK55_RS17450	0.72	+0.4
3,789,611	+		LRK55_RS17450	0.77	-0.6
3,789,611	+		LRK55_RS17450	0.77	+3.1
3,789,755	+				-0.3
3,789,755	+				-0.8
3,789,755	+				+1.2
3,789,755	+				+2.4
3,789,755	+				+3.0
3,789,755	+				+3.6
3,789,755	+				+1.5
3,789,756	-				+2.5
3,789,756	-				+3.0
3,789,756	-				+3.0
3,789,756	-				+2.6
3,789,756	-				+3.1
3,789,756	-				+1.9
3,789,756	-				+5.2
3,789,756	-				+1.0
3,789,756	-				+0.8
3,789,774	+				+1.2
3,789,774	+				+0.2
3,789,774	+				+0.8
3,789,774	+				-0.2
3,789,774	+				+0.3
3,789,774	+				-1.0
3,789,774	+				-1.6
3,789,774	+				+1.6
3,789,774	+				-0.5
3,789,774	+				-1.9
3,789,775	-				-1.7
3,789,775	-				-2.2
3,789,775	-				+0.2
3,789,775	-				+1.1
3,789,775	-				-3.8
3,789,775	-				-1.8
3,789,775	-				+1.7