Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS14655

Experiment: R2A_PIPES pH 4.25

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4.25
3,225,577	+				+0.7
3,225,577	+				-0.1
3,225,578	-				+2.7
3,225,596	-				+3.2
3,225,596	-				+1.5
3,225,691	+				+1.8
3,225,691	+				-0.4
3,225,691	+				-0.7
3,225,692	-				-1.8
3,225,703	+				+0.6
3,225,704	-				+0.5
3,225,763	+				+3.2
3,225,763	+				-0.4
3,225,763	+				+0.6
3,225,763	+				-1.8
3,225,764	-				+1.9
3,225,764	-				-3.3
3,225,764	-				-0.9
3,225,764	-				+2.0
3,225,764	-				-0.0
3,225,764	-				+3.0
3,225,764	-				+0.6
3,225,764	-				-1.7
3,225,854	+				+1.5
3,225,854	+				-0.9
3,225,855	-				+1.1
3,225,855	-				+0.9
3,225,855	-				-3.0
3,225,855	-				+0.4
3,225,855	-				+1.9
3,225,858	+				-1.7
3,225,858	+				+0.7
3,225,859	-				+0.7
3,225,862	+				+1.7
3,225,862	+				+1.1
3,225,863	-				-0.7
3,225,879	+				-1.8
3,225,880	-				-0.1
3,225,880	-				-1.7
3,225,880	-				+1.9
3,225,886	+				-0.1
3,225,886	+				+2.4
3,225,886	+				-2.7
3,225,886	+				-0.6
3,225,886	+				-0.5
3,225,886	+				-0.4
3,225,887	-				-0.1
3,225,887	-				+0.2
3,225,887	-				-0.4
3,225,887	-				+0.7
3,225,887	-				+0.9
3,225,887	-				+2.5
3,225,889	+				+0.9
3,225,889	+				-3.3
3,225,889	+				+0.5
3,225,889	+				-1.8
3,225,889	+				+1.1
3,225,889	+				-0.1
3,225,890	-				+1.4
3,225,890	-				-0.9
3,225,890	-				-2.1
3,225,931	+				+2.5
3,225,931	+				+0.8
3,225,931	+				-1.2
3,225,931	+				-0.2
3,225,931	+				-2.2
3,225,931	+				+1.4
3,225,931	+				-0.8
3,225,931	+				+1.1
3,225,931	+				+1.2
3,225,931	+				+1.1
3,225,932	-				-0.1
3,225,932	-				+1.4
3,225,932	-				+1.2
3,225,932	-				-1.8
3,225,932	-				+0.3
3,225,932	-				-0.9
3,225,932	-				-1.6
3,225,932	-				+2.5
3,225,932	-				+0.3
3,225,932	-				+0.4
3,225,932	-				+2.1
3,225,932	-				+1.6
3,225,932	-				+1.2
3,225,932	-				-0.1
3,225,932	-				+2.6
3,225,932	-				+0.5
3,225,932	-				+0.6
3,225,932	-				-0.5
3,225,958	+				+0.3
3,225,958	+				+0.3
3,225,959	-				+0.9
3,225,961	+				-2.4
3,225,961	+				-0.9
3,225,961	+				-0.4
3,225,962	-				-0.7
3,226,000	-				+0.1
3,226,152	+				-0.5
3,226,152	+				+2.8
3,226,152	+				+1.7
3,226,152	+				+2.4
3,226,152	+				-3.2
3,226,152	+				-1.5
3,226,153	-				-1.3
3,226,153	-				-1.7
3,226,153	-				-0.3
3,226,153	-				+0.9
3,226,205	+				+0.4
3,226,233	+				-2.1
3,226,243	+				-2.4
3,226,243	+				-2.4
3,226,243	+				-3.5
3,226,243	+				-1.5
3,226,243	+				-3.7
3,226,243	+				-0.9
3,226,244	-				-1.2
3,226,244	-				-0.4
3,226,244	-				-1.3
3,226,244	-				+1.1
3,226,324	+				-0.2
3,226,324	+				+1.0
3,226,339	+				-1.9
3,226,475	+				+0.6
3,226,475	+				+1.5
3,226,475	+				-2.1
3,226,476	-				-0.4
3,226,476	-				+1.7
3,226,476	-				-0.4
3,226,476	-				+1.4
3,226,476	-				-0.0
3,226,476	-				-0.0
3,226,477	+				-0.9
3,226,477	+				-0.1
3,226,477	+				+0.5
3,226,477	+				+1.4
3,226,477	+				-1.5
3,226,477	+				+1.3
3,226,478	-				-2.4
3,226,478	-				-1.2
3,226,478	-				+1.7
3,226,478	-				+0.1
3,226,478	-				+2.5
3,226,515	+				+0.9
3,226,515	+				-1.9
3,226,515	+				-0.0
3,226,515	+				-1.9
3,226,515	+				+0.8
3,226,516	-				+0.3
3,226,516	-				+0.7
3,226,516	-				+0.4
3,226,516	-				+0.8
3,226,516	-				+0.4
3,226,516	-				+0.3
3,226,516	-				-0.2
3,226,537	+				-1.5
3,226,537	+				-0.4
3,226,538	-				+0.2
3,226,538	-				+1.3
3,226,538	-				-0.9
3,226,538	-				-0.7
3,226,696	+				-0.6
3,226,697	-				+0.3
3,226,697	-				-0.5
3,226,697	-				+2.1
3,226,728	-				-1.7
3,226,741	+				-1.9
3,226,742	-				-0.5
3,226,742	-				-0.2
3,226,810	-		LRK55_RS14655	0.11	+1.8
3,226,810	-		LRK55_RS14655	0.11	-0.5
3,226,810	-		LRK55_RS14655	0.11	-2.2
3,226,810	-		LRK55_RS14655	0.11	+1.8
3,226,816	+		LRK55_RS14655	0.11	-0.8
3,226,816	+		LRK55_RS14655	0.11	+2.1
3,226,817	-		LRK55_RS14655	0.11	+2.4
3,226,843	+		LRK55_RS14655	0.12	+0.5
3,226,847	-		LRK55_RS14655	0.12	-0.6
3,226,847	-		LRK55_RS14655	0.12	-0.7
3,226,870	+		LRK55_RS14655	0.13	+2.2
3,226,870	+		LRK55_RS14655	0.13	-0.1
3,226,871	-		LRK55_RS14655	0.13	-1.7
3,226,871	-		LRK55_RS14655	0.13	-1.9
3,226,872	+		LRK55_RS14655	0.13	-2.7
3,226,923	+		LRK55_RS14655	0.15	-2.3
3,226,924	-		LRK55_RS14655	0.15	+0.2
3,226,939	-		LRK55_RS14655	0.16	-1.1
3,227,032	-		LRK55_RS14655	0.19	+1.0
3,227,046	-		LRK55_RS14655	0.20	+2.1
3,227,091	+		LRK55_RS14655	0.22	-2.4
3,227,092	-		LRK55_RS14655	0.22	+0.9
3,227,103	+		LRK55_RS14655	0.22	-0.1
3,227,104	-		LRK55_RS14655	0.22	+0.3
3,227,111	-		LRK55_RS14655	0.22	-1.4
3,227,273	-		LRK55_RS14655	0.28	+1.2
3,227,273	-		LRK55_RS14655	0.28	-0.4
3,227,296	+		LRK55_RS14655	0.29	+1.0
3,227,298	+		LRK55_RS14655	0.29	-0.9
3,227,299	-		LRK55_RS14655	0.29	+1.7
3,227,331	+		LRK55_RS14655	0.30	-2.6
3,227,335	-		LRK55_RS14655	0.31	-1.2
3,227,337	+		LRK55_RS14655	0.31	-2.3
3,227,337	+		LRK55_RS14655	0.31	-1.4
3,227,338	-		LRK55_RS14655	0.31	-2.3
3,227,338	-		LRK55_RS14655	0.31	-1.2
3,227,338	-		LRK55_RS14655	0.31	-2.1
3,227,352	-		LRK55_RS14655	0.31	-1.4
3,227,367	-		LRK55_RS14655	0.32	+0.8
3,227,560	+		LRK55_RS14655	0.39	-1.8
3,227,560	+		LRK55_RS14655	0.39	+1.1
3,227,560	+		LRK55_RS14655	0.39	+0.1
3,227,561	-		LRK55_RS14655	0.39	-1.5
3,227,561	-		LRK55_RS14655	0.39	-0.4
3,227,561	-		LRK55_RS14655	0.39	+1.9
3,227,561	-		LRK55_RS14655	0.39	+2.4
3,227,590	+		LRK55_RS14655	0.40	-0.6
3,227,590	+		LRK55_RS14655	0.40	+0.2
3,227,591	-		LRK55_RS14655	0.40	-0.4
3,227,591	-		LRK55_RS14655	0.40	-0.5
3,227,597	+		LRK55_RS14655	0.40	-3.2
3,227,597	+		LRK55_RS14655	0.40	+0.2
3,227,597	+		LRK55_RS14655	0.40	-2.1
3,227,598	-		LRK55_RS14655	0.40	-2.3
3,227,689	+		LRK55_RS14655	0.44	-0.8
3,227,850	+		LRK55_RS14655	0.50	-1.7
3,227,850	+		LRK55_RS14655	0.50	-2.3
3,227,850	+		LRK55_RS14655	0.50	+1.1
3,227,850	+		LRK55_RS14655	0.50	+1.6
3,227,850	+		LRK55_RS14655	0.50	-2.4
3,227,850	+		LRK55_RS14655	0.50	+0.3
3,227,850	+		LRK55_RS14655	0.50	+0.3
3,227,850	+		LRK55_RS14655	0.50	-0.2
3,227,850	+		LRK55_RS14655	0.50	+2.5
3,227,850	+		LRK55_RS14655	0.50	-0.1
3,227,850	+		LRK55_RS14655	0.50	-2.9
3,227,850	+		LRK55_RS14655	0.50	+0.6
3,227,850	+		LRK55_RS14655	0.50	+0.9
3,227,850	+		LRK55_RS14655	0.50	+1.5
3,227,850	+		LRK55_RS14655	0.50	+0.9
3,227,850	+		LRK55_RS14655	0.50	+0.8
3,227,850	+		LRK55_RS14655	0.50	-1.2
3,227,850	+		LRK55_RS14655	0.50	+1.8
3,227,851	-		LRK55_RS14655	0.50	+1.5
3,227,851	-		LRK55_RS14655	0.50	-3.0
3,227,851	-		LRK55_RS14655	0.50	-0.5
3,227,851	-		LRK55_RS14655	0.50	+0.3
3,227,851	-		LRK55_RS14655	0.50	+1.6
3,227,851	-		LRK55_RS14655	0.50	+1.8
3,227,851	-		LRK55_RS14655	0.50	+0.3
3,227,851	-		LRK55_RS14655	0.50	+0.9
3,227,851	-		LRK55_RS14655	0.50	-0.5
3,227,851	-		LRK55_RS14655	0.50	+0.1
3,227,851	-		LRK55_RS14655	0.50	-1.8
3,227,851	-		LRK55_RS14655	0.50	+1.5
3,227,851	-		LRK55_RS14655	0.50	-3.3
3,227,851	-		LRK55_RS14655	0.50	-3.4
3,227,851	-		LRK55_RS14655	0.50	-2.3
3,227,851	-		LRK55_RS14655	0.50	+1.1
3,227,851	-		LRK55_RS14655	0.50	-1.9
3,227,851	-		LRK55_RS14655	0.50	+0.1
3,227,851	-		LRK55_RS14655	0.50	-0.5
3,227,851	-		LRK55_RS14655	0.50	-3.1
3,227,851	-		LRK55_RS14655	0.50	+0.0
3,227,851	-		LRK55_RS14655	0.50	-2.8
3,227,851	-		LRK55_RS14655	0.50	+0.6
3,227,851	-		LRK55_RS14655	0.50	+0.1
3,227,851	-		LRK55_RS14655	0.50	-1.7
3,227,851	-		LRK55_RS14655	0.50	-2.9
3,227,851	-		LRK55_RS14655	0.50	-2.9
3,227,869	+		LRK55_RS14655	0.51	+4.9
3,227,869	+		LRK55_RS14655	0.51	+1.4
3,227,869	+		LRK55_RS14655	0.51	+0.5
3,227,882	+		LRK55_RS14655	0.51	+0.3
3,227,883	-		LRK55_RS14655	0.51	-1.4
3,227,883	-		LRK55_RS14655	0.51	+0.4
3,227,883	-		LRK55_RS14655	0.51	-0.4
3,228,162	+		LRK55_RS14655	0.61	-0.3
3,228,162	+		LRK55_RS14655	0.61	-0.1
3,228,162	+		LRK55_RS14655	0.61	+2.1
3,228,162	+		LRK55_RS14655	0.61	+0.3
3,228,162	+		LRK55_RS14655	0.61	-2.5
3,228,162	+		LRK55_RS14655	0.61	-0.7
3,228,163	-		LRK55_RS14655	0.61	-0.4
3,228,163	-		LRK55_RS14655	0.61	-1.5
3,228,163	-		LRK55_RS14655	0.61	-2.4
3,228,163	-		LRK55_RS14655	0.61	+1.3
3,228,163	-		LRK55_RS14655	0.61	+1.6
3,228,163	-		LRK55_RS14655	0.61	-1.2
3,228,163	-		LRK55_RS14655	0.61	+0.8
3,228,163	-		LRK55_RS14655	0.61	-1.1
3,228,183	+		LRK55_RS14655	0.62	-0.2
3,228,183	+		LRK55_RS14655	0.62	-1.0
3,228,183	+		LRK55_RS14655	0.62	-2.7
3,228,183	+		LRK55_RS14655	0.62	+1.6
3,228,183	+		LRK55_RS14655	0.62	-2.4
3,228,183	+		LRK55_RS14655	0.62	+0.2
3,228,183	+		LRK55_RS14655	0.62	-1.5
3,228,183	+		LRK55_RS14655	0.62	+0.7
3,228,184	-		LRK55_RS14655	0.62	-1.2
3,228,184	-		LRK55_RS14655	0.62	-0.7
3,228,184	-		LRK55_RS14655	0.62	+0.7
3,228,184	-		LRK55_RS14655	0.62	+1.1
3,228,184	-		LRK55_RS14655	0.62	-2.1
3,228,184	-		LRK55_RS14655	0.62	+0.9
3,228,184	-		LRK55_RS14655	0.62	-0.9
3,228,184	-		LRK55_RS14655	0.62	-1.2
3,228,184	-		LRK55_RS14655	0.62	-3.2
3,228,184	-		LRK55_RS14655	0.62	-1.4
3,228,184	-		LRK55_RS14655	0.62	+0.8
3,228,184	-		LRK55_RS14655	0.62	-0.6
3,228,184	-		LRK55_RS14655	0.62	-0.5
3,228,184	-		LRK55_RS14655	0.62	+0.7
3,228,184	-		LRK55_RS14655	0.62	-2.4
3,228,184	-		LRK55_RS14655	0.62	-2.5
3,228,184	-		LRK55_RS14655	0.62	-3.3
3,228,184	-		LRK55_RS14655	0.62	-1.3
3,228,184	-		LRK55_RS14655	0.62	+0.6
3,228,184	-		LRK55_RS14655	0.62	+0.3
3,228,237	+		LRK55_RS14655	0.64	-0.5
3,228,237	+		LRK55_RS14655	0.64	+0.9
3,228,237	+		LRK55_RS14655	0.64	-1.4
3,228,237	+		LRK55_RS14655	0.64	+3.2
3,228,238	-		LRK55_RS14655	0.64	-2.6
3,228,238	-		LRK55_RS14655	0.64	+1.6
3,228,238	-		LRK55_RS14655	0.64	-1.7
3,228,247	+		LRK55_RS14655	0.65	+0.1
3,228,307	+		LRK55_RS14655	0.67	+3.6
3,228,330	-		LRK55_RS14655	0.68	-1.7
3,228,384	+		LRK55_RS14655	0.70	+2.1
3,228,384	+		LRK55_RS14655	0.70	+0.3
3,228,384	+		LRK55_RS14655	0.70	-1.5
3,228,384	+		LRK55_RS14655	0.70	-0.8
3,228,385	-		LRK55_RS14655	0.70	-0.9
3,228,385	-		LRK55_RS14655	0.70	+0.9
3,228,529	+		LRK55_RS14655	0.75	+0.1
3,228,529	+		LRK55_RS14655	0.75	-0.4
3,228,529	+		LRK55_RS14655	0.75	+3.2
3,228,529	+		LRK55_RS14655	0.75	-3.4
3,228,529	+		LRK55_RS14655	0.75	+0.6
3,228,530	-		LRK55_RS14655	0.75	+1.9
3,228,530	-		LRK55_RS14655	0.75	-0.2
3,228,530	-		LRK55_RS14655	0.75	-1.0
3,228,550	-		LRK55_RS14655	0.76	+1.5
3,228,567	+		LRK55_RS14655	0.77	+0.5
3,228,567	+		LRK55_RS14655	0.77	-0.9
3,228,567	+		LRK55_RS14655	0.77	-1.5
3,228,567	+		LRK55_RS14655	0.77	+1.1
3,228,567	+		LRK55_RS14655	0.77	-0.0
3,228,567	+		LRK55_RS14655	0.77	-2.5
3,228,567	+		LRK55_RS14655	0.77	+1.4
3,228,567	+		LRK55_RS14655	0.77	+2.0
3,228,568	-		LRK55_RS14655	0.77	-2.4
3,228,568	-		LRK55_RS14655	0.77	-1.4
3,228,568	-		LRK55_RS14655	0.77	+0.9
3,228,568	-		LRK55_RS14655	0.77	+0.4
3,228,568	-		LRK55_RS14655	0.77	+0.3
3,228,568	-		LRK55_RS14655	0.77	+1.4
3,228,568	-		LRK55_RS14655	0.77	+0.7
3,228,728	-		LRK55_RS14655	0.83	+1.5
3,228,728	-		LRK55_RS14655	0.83	-3.6
3,228,728	-		LRK55_RS14655	0.83	+0.4
3,228,728	-		LRK55_RS14655	0.83	-1.7
3,228,728	-		LRK55_RS14655	0.83	-0.2
3,228,728	-		LRK55_RS14655	0.83	-2.6
3,228,728	-		LRK55_RS14655	0.83	-1.4
3,228,728	-		LRK55_RS14655	0.83	-1.6
3,228,728	-		LRK55_RS14655	0.83	+0.1
3,228,728	-		LRK55_RS14655	0.83	-0.8
3,228,905	+		LRK55_RS14655	0.89	+0.3
3,228,905	+		LRK55_RS14655	0.89	-2.5
3,228,905	+		LRK55_RS14655	0.89	-0.7
3,228,905	+		LRK55_RS14655	0.89	+1.2
3,228,905	+		LRK55_RS14655	0.89	+2.2
3,228,905	+		LRK55_RS14655	0.89	+1.2
3,228,905	+		LRK55_RS14655	0.89	-3.0
3,228,906	-		LRK55_RS14655	0.89	+1.7
3,228,906	-		LRK55_RS14655	0.89	-1.2
3,228,906	-		LRK55_RS14655	0.89	+0.7
3,228,906	-		LRK55_RS14655	0.89	-2.4
3,228,906	-		LRK55_RS14655	0.89	+0.6
3,228,906	-		LRK55_RS14655	0.89	+0.5
3,228,906	-		LRK55_RS14655	0.89	+0.8
3,228,906	-		LRK55_RS14655	0.89	+0.2
3,229,050	+				+1.9
3,229,050	+				+0.8
3,229,050	+				-0.8
3,229,050	+				-0.5
3,229,050	+				+1.3
3,229,051	-				-1.8
3,229,051	-				+1.3
3,229,051	-				+1.1
3,229,051	-				+0.9
3,229,051	-				+0.3
3,229,051	-				-3.5
3,229,051	-				-0.2
3,229,051	-				-1.4
3,229,058	+				-0.6
3,229,058	+				+0.9
3,229,058	+				-0.2
3,229,059	-				+1.9
3,229,059	-				+0.6
3,229,059	-				+0.9
3,229,059	-				-0.1
3,229,059	-				+0.4
3,229,059	-				+0.1
3,229,059	-				-0.6
3,229,059	-				-1.1
3,229,059	-				-0.1
3,229,059	-				-0.4
3,229,381	+				+0.2
3,229,381	+				-1.9
3,229,381	+				+2.5
3,229,382	-				-0.9
3,229,382	-				+1.0
3,229,533	+		LRK55_RS14660	0.23	-2.4
3,229,544	+		LRK55_RS14660	0.24	-1.5
3,229,544	+		LRK55_RS14660	0.24	+0.2
3,229,544	+		LRK55_RS14660	0.24	+0.6
3,229,544	+		LRK55_RS14660	0.24	+1.2
3,229,544	+		LRK55_RS14660	0.24	+0.7
3,229,544	+		LRK55_RS14660	0.24	+1.3
3,229,544	+		LRK55_RS14660	0.24	-2.4
3,229,544	+		LRK55_RS14660	0.24	-0.5
3,229,545	-		LRK55_RS14660	0.24	+0.4
3,229,545	-		LRK55_RS14660	0.24	-2.1
3,229,545	-		LRK55_RS14660	0.24	-0.1
3,229,545	-		LRK55_RS14660	0.24	-1.8
3,229,545	-		LRK55_RS14660	0.24	+2.1
3,229,545	-		LRK55_RS14660	0.24	+1.9
3,229,545	-		LRK55_RS14660	0.24	-1.9
3,229,545	-		LRK55_RS14660	0.24	+0.7
3,229,545	-		LRK55_RS14660	0.24	+2.3
3,229,545	-		LRK55_RS14660	0.24	+2.1
3,229,545	-		LRK55_RS14660	0.24	+1.4
3,229,637	+		LRK55_RS14660	0.36	-2.2
3,229,723	+		LRK55_RS14660	0.47	+0.4
3,229,723	+		LRK55_RS14660	0.47	-1.0
3,229,723	+		LRK55_RS14660	0.47	-0.3
3,229,724	-		LRK55_RS14660	0.47	+1.3
3,229,724	-		LRK55_RS14660	0.47	+0.7
3,229,755	+		LRK55_RS14660	0.51	-1.5
3,229,755	+		LRK55_RS14660	0.51	-0.3
3,229,756	-		LRK55_RS14660	0.52	+2.4
3,229,756	-		LRK55_RS14660	0.52	+0.2
3,229,756	-		LRK55_RS14660	0.52	-0.9
3,229,756	-		LRK55_RS14660	0.52	+0.0
3,229,756	-		LRK55_RS14660	0.52	-3.6
3,229,910	+		LRK55_RS14660	0.72	-1.7
3,229,910	+		LRK55_RS14660	0.72	+0.1
3,229,911	-		LRK55_RS14660	0.72	+1.1
3,229,911	-		LRK55_RS14660	0.72	-1.3
3,229,945	-		LRK55_RS14660	0.76	-0.6
3,229,953	-		LRK55_RS14660	0.77	+1.1
3,229,997	-		LRK55_RS14660	0.83	-0.7
3,229,997	-		LRK55_RS14660	0.83	-1.5
3,229,997	-		LRK55_RS14660	0.83	-2.8
3,229,997	-		LRK55_RS14660	0.83	+0.8
3,230,080	-				+1.1
3,230,080	-				-0.4
3,230,125	+				+1.7
3,230,126	-				-2.6
3,230,186	+				-1.5
3,230,187	-				+3.1
3,230,194	+				+0.6
3,230,195	-				-1.8