Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02875

Experiment: R2A_PIPES pH 4.25

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK55_RS02870 and LRK55_RS02875 are separated by 111 nucleotidesLRK55_RS02875 and LRK55_RS02880 are separated by 159 nucleotides LRK55_RS02870: LRK55_RS02870 - protein translocase subunit SecD, at 620,445 to 622,328 _RS02870 LRK55_RS02875: LRK55_RS02875 - preprotein translocase subunit YajC, at 622,440 to 622,772 _RS02875 LRK55_RS02880: LRK55_RS02880 - tRNA guanosine(34) transglycosylase Tgt, at 622,932 to 624,059 _RS02880 Position (kb) 622 623Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 622.667 kb on - strand, within LRK55_RS02875at 622.791 kb on - strandat 622.791 kb on - strandat 622.791 kb on - strandat 622.841 kb on - strandat 622.841 kb on - strandat 622.841 kb on - strandat 622.933 kb on + strandat 622.933 kb on + strandat 622.934 kb on - strandat 622.934 kb on - strandat 622.934 kb on - strandat 622.963 kb on + strandat 622.963 kb on + strandat 622.963 kb on + strandat 622.963 kb on + strandat 622.963 kb on + strandat 622.963 kb on + strandat 622.963 kb on + strandat 622.964 kb on - strandat 622.964 kb on - strandat 622.964 kb on - strandat 622.964 kb on - strandat 623.035 kb on + strandat 623.036 kb on - strandat 623.036 kb on - strandat 623.036 kb on - strandat 623.036 kb on - strandat 623.036 kb on - strandat 623.036 kb on - strandat 623.036 kb on - strandat 623.036 kb on - strandat 623.036 kb on - strandat 623.038 kb on + strandat 623.038 kb on + strandat 623.038 kb on + strandat 623.038 kb on + strandat 623.038 kb on + strandat 623.039 kb on - strandat 623.039 kb on - strandat 623.039 kb on - strandat 623.107 kb on + strand, within LRK55_RS02880at 623.108 kb on - strand, within LRK55_RS02880at 623.108 kb on - strand, within LRK55_RS02880at 623.108 kb on - strand, within LRK55_RS02880at 623.137 kb on + strand, within LRK55_RS02880at 623.137 kb on + strand, within LRK55_RS02880at 623.138 kb on - strand, within LRK55_RS02880at 623.138 kb on - strand, within LRK55_RS02880at 623.138 kb on - strand, within LRK55_RS02880at 623.138 kb on - strand, within LRK55_RS02880at 623.138 kb on - strand, within LRK55_RS02880at 623.138 kb on - strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.204 kb on + strand, within LRK55_RS02880at 623.246 kb on + strand, within LRK55_RS02880at 623.247 kb on - strand, within LRK55_RS02880at 623.267 kb on + strand, within LRK55_RS02880at 623.267 kb on + strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.327 kb on - strand, within LRK55_RS02880at 623.423 kb on - strand, within LRK55_RS02880at 623.479 kb on + strand, within LRK55_RS02880

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
remove
622,667 - LRK55_RS02875 0.68 -1.8
622,791 - -0.0
622,791 - -0.6
622,791 - -0.4
622,841 - -1.4
622,841 - +0.1
622,841 - -2.4
622,933 + -1.8
622,933 + -1.4
622,934 - +1.4
622,934 - +0.1
622,934 - +0.5
622,963 + +1.4
622,963 + -0.9
622,963 + +0.5
622,963 + -2.8
622,963 + -2.8
622,963 + -0.6
622,963 + -1.8
622,964 - -2.5
622,964 - +0.9
622,964 - -1.0
622,964 - -3.3
623,035 + -1.2
623,036 - -1.9
623,036 - +0.3
623,036 - -2.4
623,036 - +1.6
623,036 - -3.4
623,036 - -0.9
623,036 - -0.9
623,036 - +3.3
623,036 - -0.3
623,038 + -3.5
623,038 + -3.1
623,038 + -0.4
623,038 + -2.7
623,038 + -3.1
623,039 - +0.3
623,039 - +0.8
623,039 - -1.8
623,107 + LRK55_RS02880 0.16 -2.9
623,108 - LRK55_RS02880 0.16 +0.1
623,108 - LRK55_RS02880 0.16 -1.8
623,108 - LRK55_RS02880 0.16 -1.1
623,137 + LRK55_RS02880 0.18 +1.6
623,137 + LRK55_RS02880 0.18 -3.6
623,138 - LRK55_RS02880 0.18 +0.6
623,138 - LRK55_RS02880 0.18 +1.4
623,138 - LRK55_RS02880 0.18 -0.9
623,138 - LRK55_RS02880 0.18 -0.7
623,138 - LRK55_RS02880 0.18 -0.9
623,138 - LRK55_RS02880 0.18 +1.3
623,179 + LRK55_RS02880 0.22 -0.2
623,179 + LRK55_RS02880 0.22 +1.4
623,179 + LRK55_RS02880 0.22 -2.4
623,179 + LRK55_RS02880 0.22 +0.6
623,179 + LRK55_RS02880 0.22 -1.5
623,179 + LRK55_RS02880 0.22 +0.2
623,179 + LRK55_RS02880 0.22 +1.4
623,179 + LRK55_RS02880 0.22 -0.3
623,179 + LRK55_RS02880 0.22 +0.6
623,179 + LRK55_RS02880 0.22 -1.2
623,179 + LRK55_RS02880 0.22 +0.1
623,180 - LRK55_RS02880 0.22 -0.3
623,180 - LRK55_RS02880 0.22 +0.4
623,180 - LRK55_RS02880 0.22 -3.3
623,180 - LRK55_RS02880 0.22 -1.5
623,180 - LRK55_RS02880 0.22 -2.9
623,180 - LRK55_RS02880 0.22 -0.2
623,180 - LRK55_RS02880 0.22 -2.8
623,204 + LRK55_RS02880 0.24 -0.6
623,246 + LRK55_RS02880 0.28 +2.7
623,247 - LRK55_RS02880 0.28 +1.6
623,267 + LRK55_RS02880 0.30 -0.4
623,267 + LRK55_RS02880 0.30 -2.7
623,268 - LRK55_RS02880 0.30 -0.2
623,268 - LRK55_RS02880 0.30 +1.0
623,268 - LRK55_RS02880 0.30 -0.8
623,268 - LRK55_RS02880 0.30 -3.1
623,268 - LRK55_RS02880 0.30 -2.1
623,268 - LRK55_RS02880 0.30 -1.5
623,268 - LRK55_RS02880 0.30 -2.3
623,268 - LRK55_RS02880 0.30 -3.8
623,327 - LRK55_RS02880 0.35 -0.4
623,423 - LRK55_RS02880 0.44 -2.4
623,479 + LRK55_RS02880 0.48 -4.1

Or see this region's nucleotide sequence