Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS02400 and LRK55_RS02405 are separated by 155 nucleotides LRK55_RS02405 and LRK55_RS02410 are separated by 69 nucleotides
LRK55_RS02400: LRK55_RS02400 - S-formylglutathione hydrolase, at 517,835 to 518,683
_RS02400
LRK55_RS02405: LRK55_RS02405 - DEAD/DEAH box helicase, at 518,839 to 520,698
_RS02405
LRK55_RS02410: LRK55_RS02410 - sulfotransferase, at 520,768 to 522,384
_RS02410
Position (kb) 518
519
520
521 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 517.902 kb on + strand at 517.902 kb on + strand at 517.902 kb on + strand at 517.902 kb on + strand at 517.902 kb on + strand at 517.902 kb on + strand at 517.902 kb on + strand at 517.902 kb on + strand at 517.902 kb on + strand at 517.903 kb on - strand at 517.903 kb on - strand at 517.914 kb on + strand at 518.110 kb on - strand, within LRK55_RS02400 at 518.110 kb on - strand, within LRK55_RS02400 at 518.313 kb on + strand, within LRK55_RS02400 at 518.313 kb on + strand, within LRK55_RS02400 at 518.314 kb on - strand, within LRK55_RS02400 at 518.314 kb on - strand, within LRK55_RS02400 at 518.314 kb on - strand, within LRK55_RS02400 at 518.314 kb on - strand, within LRK55_RS02400 at 518.314 kb on - strand, within LRK55_RS02400 at 518.365 kb on - strand, within LRK55_RS02400 at 518.535 kb on + strand, within LRK55_RS02400 at 518.535 kb on + strand, within LRK55_RS02400 at 518.535 kb on + strand, within LRK55_RS02400 at 518.535 kb on + strand, within LRK55_RS02400 at 518.535 kb on + strand, within LRK55_RS02400 at 518.536 kb on - strand, within LRK55_RS02400 at 518.536 kb on - strand, within LRK55_RS02400 at 518.536 kb on - strand, within LRK55_RS02400 at 518.536 kb on - strand, within LRK55_RS02400 at 518.536 kb on - strand, within LRK55_RS02400 at 518.577 kb on + strand, within LRK55_RS02400 at 518.577 kb on + strand, within LRK55_RS02400 at 518.577 kb on + strand, within LRK55_RS02400 at 518.577 kb on + strand, within LRK55_RS02400 at 518.578 kb on - strand, within LRK55_RS02400 at 518.625 kb on + strand at 518.626 kb on - strand at 518.626 kb on - strand at 518.626 kb on - strand at 518.723 kb on - strand at 518.723 kb on - strand at 518.784 kb on + strand at 518.784 kb on + strand at 518.785 kb on - strand at 518.785 kb on - strand at 519.148 kb on + strand, within LRK55_RS02405 at 519.148 kb on + strand, within LRK55_RS02405 at 519.149 kb on - strand, within LRK55_RS02405 at 519.187 kb on + strand, within LRK55_RS02405 at 519.187 kb on + strand, within LRK55_RS02405 at 519.187 kb on + strand, within LRK55_RS02405 at 519.188 kb on - strand, within LRK55_RS02405 at 519.188 kb on - strand, within LRK55_RS02405 at 519.188 kb on - strand, within LRK55_RS02405 at 519.188 kb on - strand, within LRK55_RS02405 at 519.188 kb on - strand, within LRK55_RS02405 at 519.188 kb on - strand, within LRK55_RS02405 at 519.188 kb on - strand, within LRK55_RS02405 at 519.202 kb on + strand, within LRK55_RS02405 at 519.203 kb on - strand, within LRK55_RS02405 at 519.203 kb on - strand, within LRK55_RS02405 at 519.203 kb on - strand, within LRK55_RS02405 at 519.530 kb on - strand, within LRK55_RS02405 at 519.817 kb on + strand, within LRK55_RS02405 at 519.817 kb on + strand, within LRK55_RS02405 at 519.817 kb on + strand, within LRK55_RS02405 at 519.817 kb on + strand, within LRK55_RS02405 at 519.818 kb on - strand, within LRK55_RS02405 at 519.818 kb on - strand, within LRK55_RS02405 at 519.818 kb on - strand, within LRK55_RS02405 at 519.818 kb on - strand, within LRK55_RS02405 at 519.840 kb on - strand, within LRK55_RS02405 at 519.844 kb on + strand, within LRK55_RS02405 at 519.844 kb on + strand, within LRK55_RS02405 at 519.844 kb on + strand, within LRK55_RS02405 at 519.844 kb on + strand, within LRK55_RS02405 at 519.844 kb on + strand, within LRK55_RS02405 at 519.844 kb on + strand, within LRK55_RS02405 at 519.845 kb on - strand, within LRK55_RS02405 at 519.845 kb on - strand, within LRK55_RS02405 at 519.845 kb on - strand, within LRK55_RS02405 at 520.087 kb on + strand, within LRK55_RS02405 at 520.087 kb on + strand, within LRK55_RS02405 at 520.087 kb on + strand, within LRK55_RS02405 at 520.087 kb on + strand, within LRK55_RS02405 at 520.088 kb on - strand, within LRK55_RS02405 at 520.088 kb on - strand, within LRK55_RS02405 at 520.088 kb on - strand, within LRK55_RS02405 at 520.088 kb on - strand, within LRK55_RS02405 at 520.088 kb on - strand, within LRK55_RS02405 at 520.195 kb on + strand, within LRK55_RS02405 at 520.195 kb on + strand, within LRK55_RS02405 at 520.195 kb on + strand, within LRK55_RS02405 at 520.195 kb on + strand, within LRK55_RS02405 at 520.195 kb on + strand, within LRK55_RS02405 at 520.195 kb on + strand, within LRK55_RS02405 at 520.195 kb on + strand, within LRK55_RS02405 at 520.195 kb on + strand, within LRK55_RS02405 at 520.196 kb on - strand, within LRK55_RS02405 at 520.196 kb on - strand, within LRK55_RS02405 at 520.196 kb on - strand, within LRK55_RS02405 at 520.196 kb on - strand, within LRK55_RS02405 at 520.196 kb on - strand, within LRK55_RS02405 at 520.369 kb on + strand, within LRK55_RS02405 at 520.369 kb on + strand, within LRK55_RS02405 at 520.369 kb on + strand, within LRK55_RS02405 at 520.369 kb on + strand, within LRK55_RS02405 at 520.369 kb on + strand, within LRK55_RS02405 at 520.369 kb on + strand, within LRK55_RS02405 at 520.370 kb on - strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.456 kb on + strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.457 kb on - strand, within LRK55_RS02405 at 520.486 kb on + strand, within LRK55_RS02405 at 520.486 kb on + strand, within LRK55_RS02405 at 520.486 kb on + strand, within LRK55_RS02405 at 520.487 kb on - strand, within LRK55_RS02405 at 520.487 kb on - strand, within LRK55_RS02405 at 520.487 kb on - strand, within LRK55_RS02405 at 520.487 kb on - strand, within LRK55_RS02405 at 520.487 kb on - strand, within LRK55_RS02405 at 520.696 kb on + strand at 520.696 kb on + strand at 520.696 kb on + strand at 520.697 kb on - strand at 520.697 kb on - strand at 520.697 kb on - strand at 521.282 kb on + strand, within LRK55_RS02410 at 521.282 kb on + strand, within LRK55_RS02410 at 521.282 kb on + strand, within LRK55_RS02410 at 521.283 kb on - strand, within LRK55_RS02410 at 521.283 kb on - strand, within LRK55_RS02410 at 521.283 kb on - strand, within LRK55_RS02410 at 521.283 kb on - strand, within LRK55_RS02410 at 521.317 kb on + strand, within LRK55_RS02410 at 521.509 kb on + strand, within LRK55_RS02410 at 521.509 kb on + strand, within LRK55_RS02410
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 517,902 + +0.9 517,902 + -0.7 517,902 + +2.3 517,902 + +0.6 517,902 + +1.2 517,902 + +0.0 517,902 + +0.2 517,902 + +2.6 517,902 + -0.4 517,903 - -2.1 517,903 - +1.0 517,914 + +0.0 518,110 - LRK55_RS02400 0.32 +1.8 518,110 - LRK55_RS02400 0.32 -2.6 518,313 + LRK55_RS02400 0.56 -1.5 518,313 + LRK55_RS02400 0.56 +0.9 518,314 - LRK55_RS02400 0.56 -1.3 518,314 - LRK55_RS02400 0.56 +0.6 518,314 - LRK55_RS02400 0.56 +1.6 518,314 - LRK55_RS02400 0.56 +2.8 518,314 - LRK55_RS02400 0.56 +3.4 518,365 - LRK55_RS02400 0.62 +1.1 518,535 + LRK55_RS02400 0.82 +0.4 518,535 + LRK55_RS02400 0.82 -1.4 518,535 + LRK55_RS02400 0.82 -1.3 518,535 + LRK55_RS02400 0.82 -1.8 518,535 + LRK55_RS02400 0.82 -1.2 518,536 - LRK55_RS02400 0.83 +0.3 518,536 - LRK55_RS02400 0.83 -2.2 518,536 - LRK55_RS02400 0.83 -0.4 518,536 - LRK55_RS02400 0.83 -0.7 518,536 - LRK55_RS02400 0.83 +0.5 518,577 + LRK55_RS02400 0.87 +1.0 518,577 + LRK55_RS02400 0.87 +2.1 518,577 + LRK55_RS02400 0.87 -2.2 518,577 + LRK55_RS02400 0.87 +1.7 518,578 - LRK55_RS02400 0.88 -1.2 518,625 + -0.5 518,626 - -1.7 518,626 - +1.5 518,626 - +2.0 518,723 - +1.9 518,723 - -0.7 518,784 + +2.5 518,784 + -0.6 518,785 - -1.6 518,785 - +0.7 519,148 + LRK55_RS02405 0.17 +1.9 519,148 + LRK55_RS02405 0.17 +0.4 519,149 - LRK55_RS02405 0.17 +0.8 519,187 + LRK55_RS02405 0.19 +0.7 519,187 + LRK55_RS02405 0.19 -1.4 519,187 + LRK55_RS02405 0.19 +1.4 519,188 - LRK55_RS02405 0.19 +1.3 519,188 - LRK55_RS02405 0.19 +0.4 519,188 - LRK55_RS02405 0.19 +0.6 519,188 - LRK55_RS02405 0.19 +0.1 519,188 - LRK55_RS02405 0.19 +1.8 519,188 - LRK55_RS02405 0.19 -1.2 519,188 - LRK55_RS02405 0.19 +0.9 519,202 + LRK55_RS02405 0.20 +0.0 519,203 - LRK55_RS02405 0.20 -1.2 519,203 - LRK55_RS02405 0.20 -2.7 519,203 - LRK55_RS02405 0.20 +0.8 519,530 - LRK55_RS02405 0.37 -3.1 519,817 + LRK55_RS02405 0.53 -0.2 519,817 + LRK55_RS02405 0.53 -1.6 519,817 + LRK55_RS02405 0.53 -1.8 519,817 + LRK55_RS02405 0.53 +0.9 519,818 - LRK55_RS02405 0.53 +1.2 519,818 - LRK55_RS02405 0.53 +1.3 519,818 - LRK55_RS02405 0.53 +0.6 519,818 - LRK55_RS02405 0.53 +0.2 519,840 - LRK55_RS02405 0.54 -1.5 519,844 + LRK55_RS02405 0.54 +2.4 519,844 + LRK55_RS02405 0.54 -1.7 519,844 + LRK55_RS02405 0.54 -3.0 519,844 + LRK55_RS02405 0.54 +2.9 519,844 + LRK55_RS02405 0.54 +0.7 519,844 + LRK55_RS02405 0.54 +1.5 519,845 - LRK55_RS02405 0.54 -0.1 519,845 - LRK55_RS02405 0.54 -1.1 519,845 - LRK55_RS02405 0.54 +2.5 520,087 + LRK55_RS02405 0.67 +1.8 520,087 + LRK55_RS02405 0.67 +1.9 520,087 + LRK55_RS02405 0.67 +0.0 520,087 + LRK55_RS02405 0.67 +0.8 520,088 - LRK55_RS02405 0.67 +1.2 520,088 - LRK55_RS02405 0.67 +2.3 520,088 - LRK55_RS02405 0.67 -0.5 520,088 - LRK55_RS02405 0.67 +0.0 520,088 - LRK55_RS02405 0.67 +1.6 520,195 + LRK55_RS02405 0.73 +1.9 520,195 + LRK55_RS02405 0.73 +1.1 520,195 + LRK55_RS02405 0.73 +1.7 520,195 + LRK55_RS02405 0.73 +0.5 520,195 + LRK55_RS02405 0.73 +0.5 520,195 + LRK55_RS02405 0.73 +1.7 520,195 + LRK55_RS02405 0.73 -1.6 520,195 + LRK55_RS02405 0.73 -4.0 520,196 - LRK55_RS02405 0.73 -0.2 520,196 - LRK55_RS02405 0.73 -1.0 520,196 - LRK55_RS02405 0.73 +2.1 520,196 - LRK55_RS02405 0.73 -1.2 520,196 - LRK55_RS02405 0.73 +1.2 520,369 + LRK55_RS02405 0.82 +0.9 520,369 + LRK55_RS02405 0.82 +0.3 520,369 + LRK55_RS02405 0.82 +0.3 520,369 + LRK55_RS02405 0.82 +2.5 520,369 + LRK55_RS02405 0.82 -0.1 520,369 + LRK55_RS02405 0.82 -1.8 520,370 - LRK55_RS02405 0.82 +1.7 520,456 + LRK55_RS02405 0.87 -1.5 520,456 + LRK55_RS02405 0.87 +0.3 520,456 + LRK55_RS02405 0.87 +0.5 520,456 + LRK55_RS02405 0.87 +2.5 520,456 + LRK55_RS02405 0.87 +0.3 520,456 + LRK55_RS02405 0.87 +1.3 520,456 + LRK55_RS02405 0.87 +2.1 520,456 + LRK55_RS02405 0.87 +1.2 520,456 + LRK55_RS02405 0.87 +1.9 520,457 - LRK55_RS02405 0.87 -0.6 520,457 - LRK55_RS02405 0.87 +1.5 520,457 - LRK55_RS02405 0.87 -0.6 520,457 - LRK55_RS02405 0.87 +1.7 520,457 - LRK55_RS02405 0.87 -0.1 520,457 - LRK55_RS02405 0.87 +0.9 520,457 - LRK55_RS02405 0.87 -0.6 520,457 - LRK55_RS02405 0.87 +0.5 520,457 - LRK55_RS02405 0.87 +2.0 520,486 + LRK55_RS02405 0.89 -1.6 520,486 + LRK55_RS02405 0.89 +0.0 520,486 + LRK55_RS02405 0.89 +0.4 520,487 - LRK55_RS02405 0.89 +0.2 520,487 - LRK55_RS02405 0.89 -0.4 520,487 - LRK55_RS02405 0.89 +0.0 520,487 - LRK55_RS02405 0.89 +1.9 520,487 - LRK55_RS02405 0.89 +1.0 520,696 + -1.0 520,696 + +0.3 520,696 + -2.8 520,697 - +1.1 520,697 - +0.4 520,697 - +0.8 521,282 + LRK55_RS02410 0.32 -1.2 521,282 + LRK55_RS02410 0.32 -2.0 521,282 + LRK55_RS02410 0.32 +0.9 521,283 - LRK55_RS02410 0.32 +1.7 521,283 - LRK55_RS02410 0.32 +1.6 521,283 - LRK55_RS02410 0.32 +1.1 521,283 - LRK55_RS02410 0.32 +0.5 521,317 + LRK55_RS02410 0.34 +1.8 521,509 + LRK55_RS02410 0.46 +0.3 521,509 + LRK55_RS02410 0.46 -0.7
Or see this region's nucleotide sequence