Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02345

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02335 and LRK55_RS02340 overlap by 4 nucleotidesLRK55_RS02340 and LRK55_RS02345 are separated by 84 nucleotidesLRK55_RS02345 and LRK55_RS02350 are separated by 188 nucleotides LRK55_RS02335: LRK55_RS02335 - carbonate dehydratase, at 506,427 to 507,092 _RS02335 LRK55_RS02340: LRK55_RS02340 - Rid family hydrolase, at 507,089 to 507,520 _RS02340 LRK55_RS02345: LRK55_RS02345 - hypothetical protein, at 507,605 to 507,862 _RS02345 LRK55_RS02350: LRK55_RS02350 - N-formylglutamate deformylase, at 508,051 to 508,830 _RS02350 Position (kb) 507 508Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 507.258 kb on - strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.389 kb on + strand, within LRK55_RS02340at 507.390 kb on - strand, within LRK55_RS02340at 507.390 kb on - strand, within LRK55_RS02340at 507.390 kb on - strand, within LRK55_RS02340at 507.390 kb on - strand, within LRK55_RS02340at 507.402 kb on - strand, within LRK55_RS02340at 507.402 kb on - strand, within LRK55_RS02340at 507.410 kb on + strand, within LRK55_RS02340at 507.411 kb on - strand, within LRK55_RS02340at 507.411 kb on - strand, within LRK55_RS02340at 507.411 kb on - strand, within LRK55_RS02340at 507.411 kb on - strand, within LRK55_RS02340at 507.595 kb on + strandat 507.595 kb on + strandat 507.595 kb on + strandat 507.853 kb on + strandat 507.853 kb on + strandat 507.854 kb on - strandat 507.854 kb on - strandat 507.854 kb on - strandat 507.854 kb on - strandat 507.889 kb on - strandat 507.958 kb on - strandat 508.118 kb on + strandat 508.119 kb on - strandat 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.142 kb on + strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.143 kb on - strand, within LRK55_RS02350at 508.200 kb on - strand, within LRK55_RS02350at 508.214 kb on + strand, within LRK55_RS02350at 508.214 kb on + strand, within LRK55_RS02350at 508.214 kb on + strand, within LRK55_RS02350at 508.214 kb on + strand, within LRK55_RS02350at 508.214 kb on + strand, within LRK55_RS02350at 508.214 kb on + strand, within LRK55_RS02350at 508.215 kb on - strand, within LRK55_RS02350at 508.215 kb on - strand, within LRK55_RS02350at 508.215 kb on - strand, within LRK55_RS02350at 508.215 kb on - strand, within LRK55_RS02350at 508.215 kb on - strand, within LRK55_RS02350at 508.215 kb on - strand, within LRK55_RS02350at 508.457 kb on + strand, within LRK55_RS02350at 508.457 kb on + strand, within LRK55_RS02350at 508.457 kb on + strand, within LRK55_RS02350at 508.457 kb on + strand, within LRK55_RS02350at 508.458 kb on - strand, within LRK55_RS02350at 508.458 kb on - strand, within LRK55_RS02350at 508.458 kb on - strand, within LRK55_RS02350at 508.458 kb on - strand, within LRK55_RS02350at 508.458 kb on - strand, within LRK55_RS02350at 508.477 kb on + strand, within LRK55_RS02350at 508.533 kb on + strand, within LRK55_RS02350at 508.533 kb on + strand, within LRK55_RS02350at 508.533 kb on + strand, within LRK55_RS02350at 508.533 kb on + strand, within LRK55_RS02350at 508.533 kb on + strand, within LRK55_RS02350at 508.534 kb on - strand, within LRK55_RS02350at 508.534 kb on - strand, within LRK55_RS02350at 508.583 kb on + strand, within LRK55_RS02350at 508.625 kb on + strand, within LRK55_RS02350at 508.625 kb on + strand, within LRK55_RS02350at 508.625 kb on + strand, within LRK55_RS02350at 508.625 kb on + strand, within LRK55_RS02350at 508.626 kb on - strand, within LRK55_RS02350at 508.626 kb on - strand, within LRK55_RS02350at 508.682 kb on + strand, within LRK55_RS02350at 508.683 kb on - strand, within LRK55_RS02350at 508.683 kb on - strand, within LRK55_RS02350at 508.841 kb on + strandat 508.841 kb on + strandat 508.841 kb on + strandat 508.842 kb on - strandat 508.842 kb on - strandat 508.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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507,258 - LRK55_RS02340 0.39 +2.1
507,389 + LRK55_RS02340 0.69 -0.6
507,389 + LRK55_RS02340 0.69 -0.2
507,389 + LRK55_RS02340 0.69 +0.4
507,389 + LRK55_RS02340 0.69 -0.8
507,389 + LRK55_RS02340 0.69 -2.1
507,389 + LRK55_RS02340 0.69 +1.2
507,389 + LRK55_RS02340 0.69 -0.6
507,389 + LRK55_RS02340 0.69 +1.8
507,389 + LRK55_RS02340 0.69 -0.1
507,390 - LRK55_RS02340 0.70 +0.7
507,390 - LRK55_RS02340 0.70 +0.0
507,390 - LRK55_RS02340 0.70 -2.9
507,390 - LRK55_RS02340 0.70 +1.4
507,402 - LRK55_RS02340 0.72 -0.2
507,402 - LRK55_RS02340 0.72 +1.8
507,410 + LRK55_RS02340 0.74 +0.5
507,411 - LRK55_RS02340 0.75 -0.6
507,411 - LRK55_RS02340 0.75 +0.5
507,411 - LRK55_RS02340 0.75 -1.8
507,411 - LRK55_RS02340 0.75 -2.7
507,595 + -2.6
507,595 + -3.3
507,595 + -0.3
507,853 + -0.5
507,853 + -0.8
507,854 - -2.5
507,854 - -1.0
507,854 - -0.5
507,854 - -0.3
507,889 - -4.1
507,958 - +0.9
508,118 + -0.9
508,119 - -1.6
508,142 + LRK55_RS02350 0.12 +1.0
508,142 + LRK55_RS02350 0.12 +0.7
508,142 + LRK55_RS02350 0.12 -1.2
508,142 + LRK55_RS02350 0.12 -1.2
508,142 + LRK55_RS02350 0.12 +2.0
508,142 + LRK55_RS02350 0.12 +2.9
508,142 + LRK55_RS02350 0.12 -1.3
508,142 + LRK55_RS02350 0.12 +1.1
508,142 + LRK55_RS02350 0.12 +1.1
508,142 + LRK55_RS02350 0.12 -0.5
508,142 + LRK55_RS02350 0.12 +1.0
508,142 + LRK55_RS02350 0.12 -2.3
508,142 + LRK55_RS02350 0.12 +1.2
508,143 - LRK55_RS02350 0.12 -0.9
508,143 - LRK55_RS02350 0.12 +0.6
508,143 - LRK55_RS02350 0.12 -1.2
508,143 - LRK55_RS02350 0.12 +2.2
508,143 - LRK55_RS02350 0.12 -0.5
508,143 - LRK55_RS02350 0.12 -1.6
508,143 - LRK55_RS02350 0.12 +0.0
508,143 - LRK55_RS02350 0.12 +1.4
508,143 - LRK55_RS02350 0.12 +1.0
508,143 - LRK55_RS02350 0.12 +0.6
508,143 - LRK55_RS02350 0.12 +0.3
508,143 - LRK55_RS02350 0.12 +0.3
508,143 - LRK55_RS02350 0.12 +0.4
508,143 - LRK55_RS02350 0.12 +1.0
508,200 - LRK55_RS02350 0.19 -0.4
508,214 + LRK55_RS02350 0.21 +0.3
508,214 + LRK55_RS02350 0.21 +0.2
508,214 + LRK55_RS02350 0.21 -2.1
508,214 + LRK55_RS02350 0.21 -0.7
508,214 + LRK55_RS02350 0.21 -0.1
508,214 + LRK55_RS02350 0.21 +1.8
508,215 - LRK55_RS02350 0.21 +0.7
508,215 - LRK55_RS02350 0.21 -2.0
508,215 - LRK55_RS02350 0.21 +0.5
508,215 - LRK55_RS02350 0.21 -0.1
508,215 - LRK55_RS02350 0.21 -0.7
508,215 - LRK55_RS02350 0.21 -2.2
508,457 + LRK55_RS02350 0.52 +0.6
508,457 + LRK55_RS02350 0.52 +0.2
508,457 + LRK55_RS02350 0.52 +0.6
508,457 + LRK55_RS02350 0.52 -0.2
508,458 - LRK55_RS02350 0.52 -0.6
508,458 - LRK55_RS02350 0.52 +1.7
508,458 - LRK55_RS02350 0.52 -1.8
508,458 - LRK55_RS02350 0.52 +0.0
508,458 - LRK55_RS02350 0.52 -0.1
508,477 + LRK55_RS02350 0.55 +0.4
508,533 + LRK55_RS02350 0.62 +0.9
508,533 + LRK55_RS02350 0.62 -1.9
508,533 + LRK55_RS02350 0.62 -2.1
508,533 + LRK55_RS02350 0.62 -3.9
508,533 + LRK55_RS02350 0.62 -1.6
508,534 - LRK55_RS02350 0.62 -3.3
508,534 - LRK55_RS02350 0.62 -0.5
508,583 + LRK55_RS02350 0.68 -2.8
508,625 + LRK55_RS02350 0.74 -2.8
508,625 + LRK55_RS02350 0.74 +1.2
508,625 + LRK55_RS02350 0.74 +2.1
508,625 + LRK55_RS02350 0.74 +1.1
508,626 - LRK55_RS02350 0.74 +4.6
508,626 - LRK55_RS02350 0.74 -0.8
508,682 + LRK55_RS02350 0.81 +0.1
508,683 - LRK55_RS02350 0.81 -0.4
508,683 - LRK55_RS02350 0.81 -2.2
508,841 + +1.1
508,841 + -1.0
508,841 + -0.6
508,842 - -1.2
508,842 - +2.4
508,842 - -4.1

Or see this region's nucleotide sequence