Experiment: R2A with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS19045 and LRK55_RS19050 are separated by 414 nucleotides LRK55_RS19050 and LRK55_RS19055 are separated by 69 nucleotides LRK55_RS19055 and LRK55_RS19060 are separated by 150 nucleotides
LRK55_RS19045: LRK55_RS19045 - DNA-binding protein, at 146,887 to 147,825
_RS19045
LRK55_RS19050: LRK55_RS19050 - hypothetical protein, at 148,240 to 148,452
_RS19050
LRK55_RS19055: LRK55_RS19055 - hypothetical protein, at 148,522 to 150,288
_RS19055
LRK55_RS19060: LRK55_RS19060 - DNA-binding protein, at 150,439 to 151,425
_RS19060
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 147.878 kb on + strand at 147.878 kb on + strand at 147.878 kb on + strand at 147.879 kb on - strand at 147.879 kb on - strand at 147.879 kb on - strand at 147.879 kb on - strand at 147.924 kb on - strand at 147.924 kb on - strand at 147.924 kb on - strand at 148.046 kb on + strand at 148.046 kb on + strand at 148.046 kb on + strand at 148.046 kb on + strand at 148.046 kb on + strand at 148.047 kb on - strand at 148.047 kb on - strand at 148.186 kb on + strand at 148.186 kb on + strand at 148.186 kb on + strand at 148.187 kb on - strand at 148.187 kb on - strand at 148.187 kb on - strand at 148.187 kb on - strand at 148.315 kb on + strand, within LRK55_RS19050 at 148.316 kb on - strand, within LRK55_RS19050 at 148.316 kb on - strand, within LRK55_RS19050 at 148.427 kb on + strand, within LRK55_RS19050 at 148.478 kb on + strand at 148.479 kb on - strand at 148.479 kb on - strand at 148.533 kb on + strand at 148.533 kb on + strand at 148.533 kb on + strand at 148.533 kb on + strand at 148.533 kb on + strand at 148.534 kb on - strand at 148.534 kb on - strand at 148.534 kb on - strand at 148.534 kb on - strand at 148.534 kb on - strand at 148.563 kb on + strand at 148.576 kb on + strand at 148.576 kb on + strand at 148.576 kb on + strand at 148.576 kb on + strand at 148.576 kb on + strand at 148.576 kb on + strand at 148.576 kb on + strand at 148.577 kb on - strand at 148.577 kb on - strand at 148.577 kb on - strand at 148.598 kb on + strand at 148.598 kb on + strand at 148.598 kb on + strand at 148.598 kb on + strand at 148.598 kb on + strand at 148.598 kb on + strand at 148.598 kb on + strand at 148.599 kb on - strand at 148.599 kb on - strand at 148.677 kb on - strand at 148.677 kb on - strand at 148.677 kb on - strand at 148.677 kb on - strand at 148.677 kb on - strand at 148.689 kb on - strand at 148.746 kb on - strand, within LRK55_RS19055 at 148.746 kb on - strand, within LRK55_RS19055 at 148.746 kb on - strand, within LRK55_RS19055 at 148.746 kb on - strand, within LRK55_RS19055 at 148.746 kb on - strand, within LRK55_RS19055 at 148.814 kb on + strand, within LRK55_RS19055 at 148.825 kb on + strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 148.856 kb on - strand, within LRK55_RS19055 at 149.119 kb on + strand, within LRK55_RS19055 at 149.119 kb on + strand, within LRK55_RS19055 at 149.120 kb on - strand, within LRK55_RS19055 at 149.244 kb on + strand, within LRK55_RS19055 at 149.244 kb on + strand, within LRK55_RS19055 at 149.245 kb on - strand, within LRK55_RS19055 at 149.405 kb on + strand, within LRK55_RS19055 at 149.405 kb on + strand, within LRK55_RS19055 at 149.406 kb on - strand, within LRK55_RS19055 at 149.406 kb on - strand, within LRK55_RS19055 at 149.604 kb on + strand, within LRK55_RS19055 at 150.089 kb on + strand, within LRK55_RS19055 at 150.089 kb on + strand, within LRK55_RS19055 at 150.089 kb on + strand, within LRK55_RS19055 at 150.090 kb on - strand, within LRK55_RS19055 at 150.090 kb on - strand, within LRK55_RS19055 at 150.090 kb on - strand, within LRK55_RS19055 at 150.090 kb on - strand, within LRK55_RS19055 at 150.220 kb on + strand at 150.372 kb on + strand at 150.394 kb on - strand at 150.418 kb on + strand at 150.440 kb on + strand at 150.440 kb on + strand at 150.440 kb on + strand at 150.440 kb on + strand at 150.440 kb on + strand at 150.440 kb on + strand at 150.441 kb on - strand at 150.441 kb on - strand at 150.441 kb on - strand at 150.441 kb on - strand at 150.441 kb on - strand at 150.441 kb on - strand at 150.600 kb on + strand, within LRK55_RS19060 at 150.600 kb on + strand, within LRK55_RS19060 at 150.601 kb on - strand, within LRK55_RS19060 at 150.670 kb on + strand, within LRK55_RS19060 at 150.670 kb on + strand, within LRK55_RS19060 at 150.670 kb on + strand, within LRK55_RS19060 at 150.670 kb on + strand, within LRK55_RS19060 at 150.670 kb on + strand, within LRK55_RS19060 at 150.670 kb on + strand, within LRK55_RS19060 at 150.670 kb on + strand, within LRK55_RS19060 at 150.670 kb on + strand, within LRK55_RS19060 at 150.671 kb on - strand, within LRK55_RS19060 at 150.671 kb on - strand, within LRK55_RS19060 at 150.671 kb on - strand, within LRK55_RS19060 at 150.671 kb on - strand, within LRK55_RS19060 at 150.671 kb on - strand, within LRK55_RS19060 at 150.671 kb on - strand, within LRK55_RS19060 at 150.671 kb on - strand, within LRK55_RS19060 at 150.813 kb on + strand, within LRK55_RS19060 at 150.814 kb on - strand, within LRK55_RS19060 at 150.897 kb on + strand, within LRK55_RS19060 at 150.897 kb on + strand, within LRK55_RS19060 at 150.897 kb on + strand, within LRK55_RS19060 at 150.897 kb on + strand, within LRK55_RS19060 at 150.897 kb on + strand, within LRK55_RS19060 at 150.897 kb on + strand, within LRK55_RS19060 at 150.898 kb on - strand, within LRK55_RS19060 at 150.898 kb on - strand, within LRK55_RS19060 at 151.163 kb on - strand, within LRK55_RS19060 at 151.257 kb on + strand, within LRK55_RS19060 at 151.257 kb on + strand, within LRK55_RS19060 at 151.257 kb on + strand, within LRK55_RS19060 at 151.257 kb on + strand, within LRK55_RS19060 at 151.258 kb on - strand, within LRK55_RS19060 at 151.258 kb on - strand, within LRK55_RS19060 at 151.258 kb on - strand, within LRK55_RS19060 at 151.258 kb on - strand, within LRK55_RS19060 at 151.258 kb on - strand, within LRK55_RS19060 at 151.258 kb on - strand, within LRK55_RS19060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x remove 147,878 + -0.2 147,878 + -0.8 147,878 + +0.5 147,879 - +0.9 147,879 - -0.1 147,879 - -0.6 147,879 - +1.4 147,924 - -0.5 147,924 - +0.1 147,924 - -0.2 148,046 + -1.1 148,046 + +0.6 148,046 + -0.0 148,046 + +0.1 148,046 + +0.4 148,047 - -1.0 148,047 - -0.3 148,186 + +0.0 148,186 + -0.1 148,186 + -0.5 148,187 - -0.5 148,187 - -0.6 148,187 - -1.6 148,187 - -0.6 148,315 + LRK55_RS19050 0.35 +0.4 148,316 - LRK55_RS19050 0.36 -1.0 148,316 - LRK55_RS19050 0.36 +0.7 148,427 + LRK55_RS19050 0.88 +0.6 148,478 + -0.6 148,479 - -0.1 148,479 - -0.2 148,533 + -0.5 148,533 + -1.3 148,533 + +0.9 148,533 + -1.2 148,533 + +0.1 148,534 - +0.8 148,534 - +0.8 148,534 - -1.8 148,534 - -1.7 148,534 - +2.8 148,563 + -0.8 148,576 + +1.5 148,576 + +0.2 148,576 + -0.4 148,576 + -0.7 148,576 + +0.7 148,576 + -1.0 148,576 + -0.9 148,577 - -0.1 148,577 - -1.0 148,577 - +0.3 148,598 + +0.0 148,598 + -1.3 148,598 + -2.1 148,598 + -2.1 148,598 + +0.6 148,598 + -0.1 148,598 + -0.2 148,599 - -0.1 148,599 - -0.2 148,677 - +0.2 148,677 - -0.0 148,677 - +0.7 148,677 - -1.3 148,677 - -2.6 148,689 - -2.1 148,746 - LRK55_RS19055 0.13 +0.3 148,746 - LRK55_RS19055 0.13 -1.4 148,746 - LRK55_RS19055 0.13 -0.9 148,746 - LRK55_RS19055 0.13 -0.4 148,746 - LRK55_RS19055 0.13 -0.2 148,814 + LRK55_RS19055 0.17 -1.3 148,825 + LRK55_RS19055 0.17 -2.7 148,856 - LRK55_RS19055 0.19 -0.5 148,856 - LRK55_RS19055 0.19 +0.6 148,856 - LRK55_RS19055 0.19 +1.2 148,856 - LRK55_RS19055 0.19 -0.8 148,856 - LRK55_RS19055 0.19 -0.1 148,856 - LRK55_RS19055 0.19 -2.3 148,856 - LRK55_RS19055 0.19 +0.7 148,856 - LRK55_RS19055 0.19 -0.2 148,856 - LRK55_RS19055 0.19 +0.3 148,856 - LRK55_RS19055 0.19 -0.6 148,856 - LRK55_RS19055 0.19 +0.1 148,856 - LRK55_RS19055 0.19 -0.3 148,856 - LRK55_RS19055 0.19 -0.5 148,856 - LRK55_RS19055 0.19 +0.2 148,856 - LRK55_RS19055 0.19 -1.5 148,856 - LRK55_RS19055 0.19 -0.7 148,856 - LRK55_RS19055 0.19 -0.2 148,856 - LRK55_RS19055 0.19 +0.0 148,856 - LRK55_RS19055 0.19 -0.9 148,856 - LRK55_RS19055 0.19 -0.4 149,119 + LRK55_RS19055 0.34 -1.3 149,119 + LRK55_RS19055 0.34 -1.8 149,120 - LRK55_RS19055 0.34 -0.2 149,244 + LRK55_RS19055 0.41 -0.4 149,244 + LRK55_RS19055 0.41 -0.1 149,245 - LRK55_RS19055 0.41 -0.2 149,405 + LRK55_RS19055 0.50 +1.6 149,405 + LRK55_RS19055 0.50 +0.4 149,406 - LRK55_RS19055 0.50 -1.1 149,406 - LRK55_RS19055 0.50 +0.2 149,604 + LRK55_RS19055 0.61 +1.2 150,089 + LRK55_RS19055 0.89 +0.4 150,089 + LRK55_RS19055 0.89 -0.9 150,089 + LRK55_RS19055 0.89 +0.4 150,090 - LRK55_RS19055 0.89 -1.5 150,090 - LRK55_RS19055 0.89 +0.2 150,090 - LRK55_RS19055 0.89 +0.5 150,090 - LRK55_RS19055 0.89 +0.6 150,220 + -0.0 150,372 + -0.0 150,394 - +0.9 150,418 + +0.4 150,440 + -0.9 150,440 + -1.3 150,440 + -1.2 150,440 + -1.0 150,440 + +0.7 150,440 + +0.2 150,441 - -0.6 150,441 - +0.1 150,441 - +0.3 150,441 - -0.4 150,441 - +0.7 150,441 - -0.7 150,600 + LRK55_RS19060 0.16 -1.8 150,600 + LRK55_RS19060 0.16 -0.5 150,601 - LRK55_RS19060 0.16 +1.6 150,670 + LRK55_RS19060 0.23 -0.7 150,670 + LRK55_RS19060 0.23 +0.1 150,670 + LRK55_RS19060 0.23 +0.8 150,670 + LRK55_RS19060 0.23 -1.0 150,670 + LRK55_RS19060 0.23 +0.3 150,670 + LRK55_RS19060 0.23 -0.1 150,670 + LRK55_RS19060 0.23 -0.7 150,670 + LRK55_RS19060 0.23 -2.0 150,671 - LRK55_RS19060 0.24 -0.4 150,671 - LRK55_RS19060 0.24 -0.6 150,671 - LRK55_RS19060 0.24 -0.5 150,671 - LRK55_RS19060 0.24 -1.2 150,671 - LRK55_RS19060 0.24 -1.8 150,671 - LRK55_RS19060 0.24 -0.6 150,671 - LRK55_RS19060 0.24 -0.5 150,813 + LRK55_RS19060 0.38 -0.2 150,814 - LRK55_RS19060 0.38 -1.0 150,897 + LRK55_RS19060 0.46 -0.7 150,897 + LRK55_RS19060 0.46 +0.9 150,897 + LRK55_RS19060 0.46 -0.5 150,897 + LRK55_RS19060 0.46 +0.5 150,897 + LRK55_RS19060 0.46 -0.2 150,897 + LRK55_RS19060 0.46 -0.5 150,898 - LRK55_RS19060 0.47 +0.1 150,898 - LRK55_RS19060 0.47 -0.7 151,163 - LRK55_RS19060 0.73 +0.0 151,257 + LRK55_RS19060 0.83 -1.9 151,257 + LRK55_RS19060 0.83 -1.1 151,257 + LRK55_RS19060 0.83 +0.3 151,257 + LRK55_RS19060 0.83 -1.4 151,258 - LRK55_RS19060 0.83 -0.5 151,258 - LRK55_RS19060 0.83 -0.6 151,258 - LRK55_RS19060 0.83 -2.8 151,258 - LRK55_RS19060 0.83 -0.4 151,258 - LRK55_RS19060 0.83 +0.5 151,258 - LRK55_RS19060 0.83 -0.7
Or see this region's nucleotide sequence