Experiment: R2A with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18810 and LRK55_RS18815 are separated by 65 nucleotides LRK55_RS18815 and LRK55_RS18820 are separated by 3 nucleotides LRK55_RS18820 and LRK55_RS18825 overlap by 4 nucleotides
LRK55_RS18810: LRK55_RS18810 - DUF305 domain-containing protein, at 99,078 to 99,542
_RS18810
LRK55_RS18815: LRK55_RS18815 - copper-binding protein, at 99,608 to 99,961
_RS18815
LRK55_RS18820: LRK55_RS18820 - efflux RND transporter permease subunit, at 99,965 to 103,141
_RS18820
LRK55_RS18825: LRK55_RS18825 - efflux RND transporter periplasmic adaptor subunit, at 103,138 to 104,430
_RS18825
Position (kb) 99
100
101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.004 kb on + strand at 99.046 kb on + strand at 99.148 kb on - strand, within LRK55_RS18810 at 99.261 kb on + strand, within LRK55_RS18810 at 99.262 kb on - strand, within LRK55_RS18810 at 99.262 kb on - strand, within LRK55_RS18810 at 99.262 kb on - strand, within LRK55_RS18810 at 99.262 kb on - strand, within LRK55_RS18810 at 99.328 kb on - strand, within LRK55_RS18810 at 99.328 kb on - strand, within LRK55_RS18810 at 99.464 kb on + strand, within LRK55_RS18810 at 99.465 kb on - strand, within LRK55_RS18810 at 99.465 kb on - strand, within LRK55_RS18810 at 99.540 kb on + strand at 99.540 kb on + strand at 99.931 kb on + strand at 100.015 kb on + strand at 100.056 kb on - strand at 100.302 kb on + strand, within LRK55_RS18820 at 100.547 kb on + strand, within LRK55_RS18820 at 100.547 kb on + strand, within LRK55_RS18820 at 100.547 kb on + strand, within LRK55_RS18820 at 100.548 kb on - strand, within LRK55_RS18820 at 100.548 kb on - strand, within LRK55_RS18820 at 100.552 kb on - strand, within LRK55_RS18820 at 100.668 kb on + strand, within LRK55_RS18820 at 100.668 kb on + strand, within LRK55_RS18820 at 100.669 kb on - strand, within LRK55_RS18820 at 100.669 kb on - strand, within LRK55_RS18820 at 100.669 kb on - strand, within LRK55_RS18820 at 100.669 kb on - strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.674 kb on + strand, within LRK55_RS18820 at 100.675 kb on - strand, within LRK55_RS18820 at 100.675 kb on - strand, within LRK55_RS18820 at 100.675 kb on - strand, within LRK55_RS18820 at 100.675 kb on - strand, within LRK55_RS18820 at 100.675 kb on - strand, within LRK55_RS18820 at 100.675 kb on - strand, within LRK55_RS18820 at 100.675 kb on - strand, within LRK55_RS18820 at 100.732 kb on + strand, within LRK55_RS18820 at 100.936 kb on - strand, within LRK55_RS18820 at 100.975 kb on - strand, within LRK55_RS18820 at 101.875 kb on + strand, within LRK55_RS18820 at 101.875 kb on + strand, within LRK55_RS18820 at 102.008 kb on - strand, within LRK55_RS18820 at 102.168 kb on + strand, within LRK55_RS18820 at 102.168 kb on + strand, within LRK55_RS18820 at 102.168 kb on + strand, within LRK55_RS18820 at 102.169 kb on - strand, within LRK55_RS18820 at 102.169 kb on - strand, within LRK55_RS18820 at 102.169 kb on - strand, within LRK55_RS18820 at 102.172 kb on + strand, within LRK55_RS18820 at 102.172 kb on + strand, within LRK55_RS18820 at 102.172 kb on + strand, within LRK55_RS18820 at 102.172 kb on + strand, within LRK55_RS18820 at 102.173 kb on - strand, within LRK55_RS18820 at 102.173 kb on - strand, within LRK55_RS18820 at 102.377 kb on + strand, within LRK55_RS18820 at 102.377 kb on + strand, within LRK55_RS18820 at 102.674 kb on + strand, within LRK55_RS18820 at 102.675 kb on - strand, within LRK55_RS18820 at 102.804 kb on + strand, within LRK55_RS18820 at 102.832 kb on - strand at 102.867 kb on + strand at 102.868 kb on - strand at 102.868 kb on - strand at 102.868 kb on - strand at 102.868 kb on - strand at 102.868 kb on - strand at 102.896 kb on + strand at 102.896 kb on + strand at 102.896 kb on + strand at 102.896 kb on + strand at 102.897 kb on - strand at 102.897 kb on - strand at 102.963 kb on - strand at 102.963 kb on - strand at 103.094 kb on + strand at 103.094 kb on + strand at 103.095 kb on - strand at 103.277 kb on - strand, within LRK55_RS18825 at 103.277 kb on - strand, within LRK55_RS18825 at 103.277 kb on - strand, within LRK55_RS18825 at 103.315 kb on - strand, within LRK55_RS18825 at 103.338 kb on + strand, within LRK55_RS18825 at 103.514 kb on - strand, within LRK55_RS18825 at 103.916 kb on + strand, within LRK55_RS18825 at 103.917 kb on - strand, within LRK55_RS18825 at 103.988 kb on + strand, within LRK55_RS18825 at 103.988 kb on + strand, within LRK55_RS18825 at 103.988 kb on + strand, within LRK55_RS18825 at 103.988 kb on + strand, within LRK55_RS18825 at 103.989 kb on - strand, within LRK55_RS18825
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x remove 99,004 + -0.1 99,046 + +0.4 99,148 - LRK55_RS18810 0.15 -0.8 99,261 + LRK55_RS18810 0.39 +2.3 99,262 - LRK55_RS18810 0.40 +0.4 99,262 - LRK55_RS18810 0.40 -0.3 99,262 - LRK55_RS18810 0.40 -1.5 99,262 - LRK55_RS18810 0.40 -1.4 99,328 - LRK55_RS18810 0.54 -2.0 99,328 - LRK55_RS18810 0.54 -1.2 99,464 + LRK55_RS18810 0.83 +0.8 99,465 - LRK55_RS18810 0.83 -0.5 99,465 - LRK55_RS18810 0.83 -0.3 99,540 + +0.1 99,540 + -0.2 99,931 + -0.6 100,015 + -0.6 100,056 - +1.2 100,302 + LRK55_RS18820 0.11 -1.4 100,547 + LRK55_RS18820 0.18 -0.4 100,547 + LRK55_RS18820 0.18 +0.1 100,547 + LRK55_RS18820 0.18 +0.5 100,548 - LRK55_RS18820 0.18 +0.2 100,548 - LRK55_RS18820 0.18 -0.4 100,552 - LRK55_RS18820 0.18 -0.8 100,668 + LRK55_RS18820 0.22 -1.6 100,668 + LRK55_RS18820 0.22 +0.0 100,669 - LRK55_RS18820 0.22 -0.9 100,669 - LRK55_RS18820 0.22 -1.5 100,669 - LRK55_RS18820 0.22 -0.7 100,669 - LRK55_RS18820 0.22 +0.6 100,674 + LRK55_RS18820 0.22 -0.7 100,674 + LRK55_RS18820 0.22 -0.8 100,674 + LRK55_RS18820 0.22 -0.8 100,674 + LRK55_RS18820 0.22 +0.4 100,674 + LRK55_RS18820 0.22 -0.5 100,674 + LRK55_RS18820 0.22 +0.2 100,674 + LRK55_RS18820 0.22 -2.4 100,674 + LRK55_RS18820 0.22 -0.4 100,674 + LRK55_RS18820 0.22 -0.3 100,674 + LRK55_RS18820 0.22 -0.2 100,675 - LRK55_RS18820 0.22 -1.2 100,675 - LRK55_RS18820 0.22 +0.4 100,675 - LRK55_RS18820 0.22 -0.4 100,675 - LRK55_RS18820 0.22 -0.9 100,675 - LRK55_RS18820 0.22 +1.1 100,675 - LRK55_RS18820 0.22 +0.1 100,675 - LRK55_RS18820 0.22 -2.3 100,732 + LRK55_RS18820 0.24 +0.6 100,936 - LRK55_RS18820 0.31 -0.2 100,975 - LRK55_RS18820 0.32 -0.1 101,875 + LRK55_RS18820 0.60 +0.5 101,875 + LRK55_RS18820 0.60 -0.3 102,008 - LRK55_RS18820 0.64 -0.7 102,168 + LRK55_RS18820 0.69 -2.3 102,168 + LRK55_RS18820 0.69 -1.5 102,168 + LRK55_RS18820 0.69 +0.1 102,169 - LRK55_RS18820 0.69 +0.2 102,169 - LRK55_RS18820 0.69 -0.7 102,169 - LRK55_RS18820 0.69 -2.1 102,172 + LRK55_RS18820 0.69 +2.3 102,172 + LRK55_RS18820 0.69 -0.3 102,172 + LRK55_RS18820 0.69 -0.8 102,172 + LRK55_RS18820 0.69 -1.8 102,173 - LRK55_RS18820 0.69 -0.2 102,173 - LRK55_RS18820 0.69 +1.5 102,377 + LRK55_RS18820 0.76 +0.6 102,377 + LRK55_RS18820 0.76 -0.7 102,674 + LRK55_RS18820 0.85 +1.1 102,675 - LRK55_RS18820 0.85 +0.9 102,804 + LRK55_RS18820 0.89 -0.9 102,832 - -0.2 102,867 + +0.7 102,868 - +0.5 102,868 - -0.5 102,868 - +1.8 102,868 - -1.8 102,868 - -0.2 102,896 + +0.4 102,896 + +1.0 102,896 + +0.3 102,896 + +0.6 102,897 - -2.3 102,897 - +1.0 102,963 - -0.3 102,963 - -0.8 103,094 + -0.5 103,094 + -0.5 103,095 - -0.2 103,277 - LRK55_RS18825 0.11 +0.9 103,277 - LRK55_RS18825 0.11 -0.7 103,277 - LRK55_RS18825 0.11 -0.2 103,315 - LRK55_RS18825 0.14 -0.5 103,338 + LRK55_RS18825 0.15 +0.9 103,514 - LRK55_RS18825 0.29 +1.0 103,916 + LRK55_RS18825 0.60 -0.3 103,917 - LRK55_RS18825 0.60 -0.5 103,988 + LRK55_RS18825 0.66 +0.0 103,988 + LRK55_RS18825 0.66 +0.2 103,988 + LRK55_RS18825 0.66 +0.2 103,988 + LRK55_RS18825 0.66 -1.4 103,989 - LRK55_RS18825 0.66 -1.0
Or see this region's nucleotide sequence