Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18670

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS18665 and LRK55_RS18670 are separated by 1 nucleotidesLRK55_RS18670 and LRK55_RS18675 overlap by 8 nucleotidesLRK55_RS18675 and LRK55_RS18680 overlap by 4 nucleotides LRK55_RS18665: LRK55_RS18665 - efflux RND transporter periplasmic adaptor subunit, at 68,517 to 69,578 _RS18665 LRK55_RS18670: LRK55_RS18670 - CusA/CzcA family heavy metal efflux RND transporter, at 69,580 to 72,663 _RS18670 LRK55_RS18675: LRK55_RS18675 - DUF3240 family protein, at 72,656 to 72,973 _RS18675 LRK55_RS18680: LRK55_RS18680 - TolC family protein, at 72,970 to 74,214 _RS18680 Position (kb) 69 70 71 72 73Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 68.594 kb on + strandat 68.595 kb on - strandat 68.595 kb on - strandat 68.641 kb on - strand, within LRK55_RS18665at 69.308 kb on - strand, within LRK55_RS18665at 69.408 kb on + strand, within LRK55_RS18665at 69.409 kb on - strand, within LRK55_RS18665at 69.409 kb on - strand, within LRK55_RS18665at 69.409 kb on - strand, within LRK55_RS18665at 69.490 kb on + strandat 69.491 kb on - strandat 69.745 kb on - strandat 69.745 kb on - strandat 69.745 kb on - strandat 69.841 kb on + strandat 69.842 kb on - strandat 69.889 kb on + strand, within LRK55_RS18670at 69.889 kb on + strand, within LRK55_RS18670at 69.889 kb on + strand, within LRK55_RS18670at 69.889 kb on + strand, within LRK55_RS18670at 69.889 kb on + strand, within LRK55_RS18670at 69.889 kb on + strand, within LRK55_RS18670at 69.890 kb on - strand, within LRK55_RS18670at 69.890 kb on - strand, within LRK55_RS18670at 70.133 kb on - strand, within LRK55_RS18670at 70.134 kb on - strand, within LRK55_RS18670at 70.134 kb on - strand, within LRK55_RS18670at 70.543 kb on + strand, within LRK55_RS18670at 70.544 kb on - strand, within LRK55_RS18670at 70.544 kb on - strand, within LRK55_RS18670at 70.650 kb on - strand, within LRK55_RS18670at 70.650 kb on - strand, within LRK55_RS18670at 70.650 kb on - strand, within LRK55_RS18670at 70.650 kb on - strand, within LRK55_RS18670at 70.925 kb on + strand, within LRK55_RS18670at 71.435 kb on + strand, within LRK55_RS18670at 71.501 kb on + strand, within LRK55_RS18670at 71.527 kb on + strand, within LRK55_RS18670at 71.527 kb on + strand, within LRK55_RS18670at 71.528 kb on - strand, within LRK55_RS18670at 71.528 kb on - strand, within LRK55_RS18670at 71.689 kb on + strand, within LRK55_RS18670at 71.690 kb on - strand, within LRK55_RS18670at 71.716 kb on + strand, within LRK55_RS18670at 71.717 kb on - strand, within LRK55_RS18670at 71.717 kb on - strand, within LRK55_RS18670at 71.769 kb on - strand, within LRK55_RS18670at 72.231 kb on - strand, within LRK55_RS18670at 72.310 kb on + strand, within LRK55_RS18670at 72.310 kb on + strand, within LRK55_RS18670at 72.311 kb on - strand, within LRK55_RS18670at 72.388 kb on + strandat 72.388 kb on + strandat 72.389 kb on - strandat 72.389 kb on - strandat 72.619 kb on + strandat 72.620 kb on - strandat 72.620 kb on - strandat 72.650 kb on + strandat 72.650 kb on + strandat 72.651 kb on - strandat 72.651 kb on - strandat 72.651 kb on - strandat 72.651 kb on - strandat 72.661 kb on + strandat 72.661 kb on + strandat 72.661 kb on + strandat 72.662 kb on - strandat 72.848 kb on + strand, within LRK55_RS18675at 72.849 kb on - strand, within LRK55_RS18675at 73.541 kb on + strand, within LRK55_RS18680at 73.623 kb on + strand, within LRK55_RS18680

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x
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68,594 + +2.0
68,595 - -0.4
68,595 - +0.2
68,641 - LRK55_RS18665 0.12 -0.7
69,308 - LRK55_RS18665 0.74 -0.6
69,408 + LRK55_RS18665 0.84 -0.3
69,409 - LRK55_RS18665 0.84 +0.5
69,409 - LRK55_RS18665 0.84 +0.7
69,409 - LRK55_RS18665 0.84 +0.5
69,490 + +0.2
69,491 - -2.4
69,745 - +0.8
69,745 - -2.4
69,745 - -0.8
69,841 + -1.6
69,842 - -1.1
69,889 + LRK55_RS18670 0.10 -0.4
69,889 + LRK55_RS18670 0.10 -0.5
69,889 + LRK55_RS18670 0.10 +1.6
69,889 + LRK55_RS18670 0.10 -0.2
69,889 + LRK55_RS18670 0.10 -0.6
69,889 + LRK55_RS18670 0.10 -0.2
69,890 - LRK55_RS18670 0.10 +0.1
69,890 - LRK55_RS18670 0.10 -1.0
70,133 - LRK55_RS18670 0.18 +0.2
70,134 - LRK55_RS18670 0.18 -0.0
70,134 - LRK55_RS18670 0.18 -0.6
70,543 + LRK55_RS18670 0.31 -1.3
70,544 - LRK55_RS18670 0.31 -0.0
70,544 - LRK55_RS18670 0.31 +0.2
70,650 - LRK55_RS18670 0.35 -0.5
70,650 - LRK55_RS18670 0.35 +0.1
70,650 - LRK55_RS18670 0.35 -0.8
70,650 - LRK55_RS18670 0.35 -0.8
70,925 + LRK55_RS18670 0.44 +0.2
71,435 + LRK55_RS18670 0.60 +0.3
71,501 + LRK55_RS18670 0.62 -1.3
71,527 + LRK55_RS18670 0.63 -0.3
71,527 + LRK55_RS18670 0.63 -0.1
71,528 - LRK55_RS18670 0.63 -1.8
71,528 - LRK55_RS18670 0.63 +0.3
71,689 + LRK55_RS18670 0.68 -1.3
71,690 - LRK55_RS18670 0.68 -0.5
71,716 + LRK55_RS18670 0.69 -0.6
71,717 - LRK55_RS18670 0.69 -0.3
71,717 - LRK55_RS18670 0.69 -0.0
71,769 - LRK55_RS18670 0.71 -0.7
72,231 - LRK55_RS18670 0.86 -1.5
72,310 + LRK55_RS18670 0.89 -0.6
72,310 + LRK55_RS18670 0.89 -1.9
72,311 - LRK55_RS18670 0.89 -0.6
72,388 + -0.1
72,388 + -1.3
72,389 - -0.8
72,389 - +1.2
72,619 + +0.2
72,620 - +0.4
72,620 - -0.2
72,650 + -0.3
72,650 + -0.9
72,651 - -0.5
72,651 - -2.6
72,651 - -0.9
72,651 - +0.1
72,661 + -4.0
72,661 + +0.9
72,661 + +0.3
72,662 - +0.1
72,848 + LRK55_RS18675 0.60 +1.2
72,849 - LRK55_RS18675 0.61 -2.8
73,541 + LRK55_RS18680 0.46 -0.2
73,623 + LRK55_RS18680 0.52 +0.0

Or see this region's nucleotide sequence