Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS09560

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Metal_ion_mix_sitestressplate 2 x
2,090,254	+		LRK55_RS09555	0.39	-0.2
2,090,254	+		LRK55_RS09555	0.39	-0.4
2,090,255	-		LRK55_RS09555	0.39	+1.3
2,090,255	-		LRK55_RS09555	0.39	-1.2
2,090,284	+		LRK55_RS09555	0.42	-1.9
2,090,284	+		LRK55_RS09555	0.42	-0.1
2,090,284	+		LRK55_RS09555	0.42	+1.3
2,090,284	+		LRK55_RS09555	0.42	+0.5
2,090,285	-		LRK55_RS09555	0.42	+0.1
2,090,285	-		LRK55_RS09555	0.42	-0.0
2,090,285	-		LRK55_RS09555	0.42	+2.2
2,090,285	-		LRK55_RS09555	0.42	-0.1
2,090,344	+		LRK55_RS09555	0.48	+0.6
2,090,344	+		LRK55_RS09555	0.48	+0.3
2,090,344	+		LRK55_RS09555	0.48	+0.6
2,090,344	+		LRK55_RS09555	0.48	+0.1
2,090,345	-		LRK55_RS09555	0.48	+0.9
2,090,345	-		LRK55_RS09555	0.48	+0.2
2,090,345	-		LRK55_RS09555	0.48	-0.7
2,090,345	-		LRK55_RS09555	0.48	+0.1
2,090,345	-		LRK55_RS09555	0.48	-0.5
2,090,449	+		LRK55_RS09555	0.59	+0.1
2,090,449	+		LRK55_RS09555	0.59	+0.1
2,090,449	+		LRK55_RS09555	0.59	-1.0
2,090,449	+		LRK55_RS09555	0.59	+0.0
2,090,449	+		LRK55_RS09555	0.59	-0.3
2,090,449	+		LRK55_RS09555	0.59	-0.4
2,090,449	+		LRK55_RS09555	0.59	-0.2
2,090,450	-		LRK55_RS09555	0.59	+0.9
2,090,450	-		LRK55_RS09555	0.59	-0.0
2,090,450	-		LRK55_RS09555	0.59	-1.0
2,090,450	-		LRK55_RS09555	0.59	+1.1
2,090,450	-		LRK55_RS09555	0.59	+0.2
2,090,450	-		LRK55_RS09555	0.59	-1.6
2,090,450	-		LRK55_RS09555	0.59	-0.2
2,090,812	+				+0.2
2,090,813	-				+0.8
2,090,813	-				-2.6
2,090,870	+				-1.6
2,090,871	-				-1.8
2,090,871	-				-0.0
2,090,871	-				-0.6
2,091,229	-		LRK55_RS09560	0.30	-0.1
2,091,229	-		LRK55_RS09560	0.30	+0.3
2,091,261	+		LRK55_RS09560	0.33	+0.2
2,091,261	+		LRK55_RS09560	0.33	+1.1
2,091,261	+		LRK55_RS09560	0.33	-0.3
2,091,262	-		LRK55_RS09560	0.34	+0.2
2,091,264	+		LRK55_RS09560	0.34	+0.4
2,091,264	+		LRK55_RS09560	0.34	-0.2
2,091,264	+		LRK55_RS09560	0.34	+0.5
2,091,265	-		LRK55_RS09560	0.34	+0.1
2,091,265	-		LRK55_RS09560	0.34	-0.0
2,091,265	-		LRK55_RS09560	0.34	+0.5
2,091,265	-		LRK55_RS09560	0.34	+1.6
2,091,265	-		LRK55_RS09560	0.34	-0.3
2,091,265	-		LRK55_RS09560	0.34	-0.7
2,091,265	-		LRK55_RS09560	0.34	-0.5
2,091,342	+		LRK55_RS09560	0.42	+0.3
2,091,342	+		LRK55_RS09560	0.42	-0.1
2,091,342	+		LRK55_RS09560	0.42	+0.3
2,091,343	-		LRK55_RS09560	0.42	-0.4
2,091,343	-		LRK55_RS09560	0.42	-0.7
2,091,343	-		LRK55_RS09560	0.42	-0.8
2,091,343	-		LRK55_RS09560	0.42	-0.0
2,091,343	-		LRK55_RS09560	0.42	+1.3
2,091,389	+		LRK55_RS09560	0.47	-0.5
2,091,390	-		LRK55_RS09560	0.47	+1.0
2,091,528	+		LRK55_RS09560	0.62	-0.1
2,091,528	+		LRK55_RS09560	0.62	-0.4
2,091,529	-		LRK55_RS09560	0.62	-0.4
2,091,529	-		LRK55_RS09560	0.62	-0.3
2,091,529	-		LRK55_RS09560	0.62	-0.9
2,091,529	-		LRK55_RS09560	0.62	+0.4
2,091,529	-		LRK55_RS09560	0.62	+0.4
2,091,529	-		LRK55_RS09560	0.62	-0.4
2,091,529	-		LRK55_RS09560	0.62	-0.4
2,091,732	+		LRK55_RS09560	0.83	-2.0
2,091,732	+		LRK55_RS09560	0.83	+0.4
2,091,732	+		LRK55_RS09560	0.83	+1.1
2,091,732	+		LRK55_RS09560	0.83	+0.2
2,091,732	+		LRK55_RS09560	0.83	-0.1
2,091,732	+		LRK55_RS09560	0.83	-0.2
2,091,733	-		LRK55_RS09560	0.83	-0.4
2,091,733	-		LRK55_RS09560	0.83	+1.8
2,091,969	+				+0.4
2,092,246	+				+1.0
2,092,246	+				-0.0
2,092,247	-				+0.1
2,092,247	-				-0.1
2,092,275	+				+1.0
2,092,277	+				-2.1
2,092,278	-				+1.1
2,092,278	-				+1.5
2,092,561	+		LRK55_RS09570	0.27	-2.6
2,092,561	+		LRK55_RS09570	0.27	+0.8
2,092,561	+		LRK55_RS09570	0.27	-1.0
2,092,562	-		LRK55_RS09570	0.27	+1.6
2,092,562	-		LRK55_RS09570	0.27	-1.8
2,092,820	+		LRK55_RS09570	0.55	-1.6