Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS04920

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS04915 and LRK55_RS04920 are separated by 158 nucleotidesLRK55_RS04920 and LRK55_RS04925 are separated by 10 nucleotides LRK55_RS04915: LRK55_RS04915 - class I SAM-dependent methyltransferase, at 1,058,669 to 1,059,553 _RS04915 LRK55_RS04920: LRK55_RS04920 - Wzz/FepE/Etk N-terminal domain-containing protein, at 1,059,712 to 1,060,530 _RS04920 LRK55_RS04925: LRK55_RS04925 - hypothetical protein, at 1,060,541 to 1,061,689 _RS04925 Position (kb) 1059 1060 1061Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1058.787 kb on + strand, within LRK55_RS04915at 1058.787 kb on + strand, within LRK55_RS04915at 1058.787 kb on + strand, within LRK55_RS04915at 1058.787 kb on + strand, within LRK55_RS04915at 1058.787 kb on + strand, within LRK55_RS04915at 1058.787 kb on + strand, within LRK55_RS04915at 1058.787 kb on + strand, within LRK55_RS04915at 1058.788 kb on - strand, within LRK55_RS04915at 1058.788 kb on - strand, within LRK55_RS04915at 1058.788 kb on - strand, within LRK55_RS04915at 1058.788 kb on - strand, within LRK55_RS04915at 1058.788 kb on - strand, within LRK55_RS04915at 1058.788 kb on - strand, within LRK55_RS04915at 1058.788 kb on - strand, within LRK55_RS04915at 1058.799 kb on + strand, within LRK55_RS04915at 1058.868 kb on + strand, within LRK55_RS04915at 1058.868 kb on + strand, within LRK55_RS04915at 1058.868 kb on + strand, within LRK55_RS04915at 1058.869 kb on - strand, within LRK55_RS04915at 1058.869 kb on - strand, within LRK55_RS04915at 1058.869 kb on - strand, within LRK55_RS04915at 1058.869 kb on - strand, within LRK55_RS04915at 1058.886 kb on + strand, within LRK55_RS04915at 1058.887 kb on - strand, within LRK55_RS04915at 1058.887 kb on - strand, within LRK55_RS04915at 1058.887 kb on - strand, within LRK55_RS04915at 1058.887 kb on - strand, within LRK55_RS04915at 1058.887 kb on - strand, within LRK55_RS04915at 1058.889 kb on + strand, within LRK55_RS04915at 1058.890 kb on - strand, within LRK55_RS04915at 1058.890 kb on - strand, within LRK55_RS04915at 1058.890 kb on - strand, within LRK55_RS04915at 1058.890 kb on - strand, within LRK55_RS04915at 1058.890 kb on - strand, within LRK55_RS04915at 1058.890 kb on - strand, within LRK55_RS04915at 1058.983 kb on - strand, within LRK55_RS04915at 1059.117 kb on + strand, within LRK55_RS04915at 1059.117 kb on + strand, within LRK55_RS04915at 1059.117 kb on + strand, within LRK55_RS04915at 1059.117 kb on + strand, within LRK55_RS04915at 1059.117 kb on + strand, within LRK55_RS04915at 1059.118 kb on - strand, within LRK55_RS04915at 1059.118 kb on - strand, within LRK55_RS04915at 1059.118 kb on - strand, within LRK55_RS04915at 1059.414 kb on + strand, within LRK55_RS04915at 1059.833 kb on + strand, within LRK55_RS04920at 1059.834 kb on - strand, within LRK55_RS04920at 1059.834 kb on - strand, within LRK55_RS04920at 1059.834 kb on - strand, within LRK55_RS04920at 1059.860 kb on + strand, within LRK55_RS04920at 1059.860 kb on + strand, within LRK55_RS04920at 1059.860 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.866 kb on + strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1059.867 kb on - strand, within LRK55_RS04920at 1060.004 kb on + strand, within LRK55_RS04920at 1060.430 kb on + strand, within LRK55_RS04920at 1060.430 kb on + strand, within LRK55_RS04920at 1060.430 kb on + strand, within LRK55_RS04920at 1060.430 kb on + strand, within LRK55_RS04920at 1060.430 kb on + strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.431 kb on - strand, within LRK55_RS04920at 1060.512 kb on - strandat 1060.512 kb on - strandat 1060.656 kb on + strand, within LRK55_RS04925at 1060.692 kb on + strand, within LRK55_RS04925at 1060.692 kb on + strand, within LRK55_RS04925at 1060.692 kb on + strand, within LRK55_RS04925at 1060.693 kb on - strand, within LRK55_RS04925at 1060.693 kb on - strand, within LRK55_RS04925at 1060.773 kb on + strand, within LRK55_RS04925at 1060.773 kb on + strand, within LRK55_RS04925at 1060.773 kb on + strand, within LRK55_RS04925at 1060.773 kb on + strand, within LRK55_RS04925at 1060.773 kb on + strand, within LRK55_RS04925at 1060.773 kb on + strand, within LRK55_RS04925at 1060.774 kb on - strand, within LRK55_RS04925at 1060.774 kb on - strand, within LRK55_RS04925at 1060.774 kb on - strand, within LRK55_RS04925at 1060.774 kb on - strand, within LRK55_RS04925at 1060.774 kb on - strand, within LRK55_RS04925at 1060.975 kb on - strand, within LRK55_RS04925at 1060.975 kb on - strand, within LRK55_RS04925at 1060.992 kb on + strand, within LRK55_RS04925at 1060.992 kb on + strand, within LRK55_RS04925at 1061.031 kb on + strand, within LRK55_RS04925at 1061.032 kb on - strand, within LRK55_RS04925at 1061.058 kb on + strand, within LRK55_RS04925at 1061.059 kb on - strand, within LRK55_RS04925at 1061.485 kb on - strand, within LRK55_RS04925at 1061.485 kb on - strand, within LRK55_RS04925

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x
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1,058,787 + LRK55_RS04915 0.13 -1.2
1,058,787 + LRK55_RS04915 0.13 +0.2
1,058,787 + LRK55_RS04915 0.13 +0.3
1,058,787 + LRK55_RS04915 0.13 -0.3
1,058,787 + LRK55_RS04915 0.13 +0.6
1,058,787 + LRK55_RS04915 0.13 -0.2
1,058,787 + LRK55_RS04915 0.13 +0.5
1,058,788 - LRK55_RS04915 0.13 -0.2
1,058,788 - LRK55_RS04915 0.13 +0.8
1,058,788 - LRK55_RS04915 0.13 +1.4
1,058,788 - LRK55_RS04915 0.13 +0.7
1,058,788 - LRK55_RS04915 0.13 +0.5
1,058,788 - LRK55_RS04915 0.13 -0.0
1,058,788 - LRK55_RS04915 0.13 -0.9
1,058,799 + LRK55_RS04915 0.15 +1.4
1,058,868 + LRK55_RS04915 0.22 +1.0
1,058,868 + LRK55_RS04915 0.22 +0.6
1,058,868 + LRK55_RS04915 0.22 -0.1
1,058,869 - LRK55_RS04915 0.23 +0.5
1,058,869 - LRK55_RS04915 0.23 -0.7
1,058,869 - LRK55_RS04915 0.23 -0.1
1,058,869 - LRK55_RS04915 0.23 +2.2
1,058,886 + LRK55_RS04915 0.25 -2.2
1,058,887 - LRK55_RS04915 0.25 +0.8
1,058,887 - LRK55_RS04915 0.25 -1.2
1,058,887 - LRK55_RS04915 0.25 +0.6
1,058,887 - LRK55_RS04915 0.25 -0.9
1,058,887 - LRK55_RS04915 0.25 -0.4
1,058,889 + LRK55_RS04915 0.25 +0.3
1,058,890 - LRK55_RS04915 0.25 -0.0
1,058,890 - LRK55_RS04915 0.25 +0.7
1,058,890 - LRK55_RS04915 0.25 +0.4
1,058,890 - LRK55_RS04915 0.25 +1.1
1,058,890 - LRK55_RS04915 0.25 +0.7
1,058,890 - LRK55_RS04915 0.25 -0.3
1,058,983 - LRK55_RS04915 0.35 +0.5
1,059,117 + LRK55_RS04915 0.51 -2.6
1,059,117 + LRK55_RS04915 0.51 -1.2
1,059,117 + LRK55_RS04915 0.51 -0.2
1,059,117 + LRK55_RS04915 0.51 +0.8
1,059,117 + LRK55_RS04915 0.51 +0.0
1,059,118 - LRK55_RS04915 0.51 -1.6
1,059,118 - LRK55_RS04915 0.51 -0.1
1,059,118 - LRK55_RS04915 0.51 -0.7
1,059,414 + LRK55_RS04915 0.84 -0.9
1,059,833 + LRK55_RS04920 0.15 -0.9
1,059,834 - LRK55_RS04920 0.15 +1.1
1,059,834 - LRK55_RS04920 0.15 -0.7
1,059,834 - LRK55_RS04920 0.15 +0.5
1,059,860 + LRK55_RS04920 0.18 +0.2
1,059,860 + LRK55_RS04920 0.18 +1.0
1,059,860 + LRK55_RS04920 0.18 -1.6
1,059,866 + LRK55_RS04920 0.19 +0.1
1,059,866 + LRK55_RS04920 0.19 -1.0
1,059,866 + LRK55_RS04920 0.19 -0.3
1,059,866 + LRK55_RS04920 0.19 +0.2
1,059,866 + LRK55_RS04920 0.19 +0.3
1,059,866 + LRK55_RS04920 0.19 +1.1
1,059,866 + LRK55_RS04920 0.19 +0.9
1,059,866 + LRK55_RS04920 0.19 +0.5
1,059,866 + LRK55_RS04920 0.19 -0.2
1,059,866 + LRK55_RS04920 0.19 +3.1
1,059,866 + LRK55_RS04920 0.19 +0.4
1,059,866 + LRK55_RS04920 0.19 +0.7
1,059,866 + LRK55_RS04920 0.19 +0.2
1,059,866 + LRK55_RS04920 0.19 +0.1
1,059,867 - LRK55_RS04920 0.19 -1.4
1,059,867 - LRK55_RS04920 0.19 +0.5
1,059,867 - LRK55_RS04920 0.19 +0.7
1,059,867 - LRK55_RS04920 0.19 +2.1
1,059,867 - LRK55_RS04920 0.19 -0.9
1,059,867 - LRK55_RS04920 0.19 -0.1
1,059,867 - LRK55_RS04920 0.19 -0.2
1,059,867 - LRK55_RS04920 0.19 -0.4
1,059,867 - LRK55_RS04920 0.19 -0.5
1,060,004 + LRK55_RS04920 0.36 +0.7
1,060,430 + LRK55_RS04920 0.88 +0.1
1,060,430 + LRK55_RS04920 0.88 -0.3
1,060,430 + LRK55_RS04920 0.88 +0.3
1,060,430 + LRK55_RS04920 0.88 -0.9
1,060,430 + LRK55_RS04920 0.88 +0.6
1,060,431 - LRK55_RS04920 0.88 +0.8
1,060,431 - LRK55_RS04920 0.88 -0.0
1,060,431 - LRK55_RS04920 0.88 +0.1
1,060,431 - LRK55_RS04920 0.88 -0.4
1,060,431 - LRK55_RS04920 0.88 -0.6
1,060,431 - LRK55_RS04920 0.88 +0.9
1,060,431 - LRK55_RS04920 0.88 -0.4
1,060,431 - LRK55_RS04920 0.88 +0.8
1,060,431 - LRK55_RS04920 0.88 -1.2
1,060,431 - LRK55_RS04920 0.88 +1.5
1,060,431 - LRK55_RS04920 0.88 -0.6
1,060,431 - LRK55_RS04920 0.88 -1.1
1,060,431 - LRK55_RS04920 0.88 +0.1
1,060,431 - LRK55_RS04920 0.88 -0.2
1,060,512 - -0.7
1,060,512 - +0.2
1,060,656 + LRK55_RS04925 0.10 +0.3
1,060,692 + LRK55_RS04925 0.13 -0.2
1,060,692 + LRK55_RS04925 0.13 +0.4
1,060,692 + LRK55_RS04925 0.13 -0.4
1,060,693 - LRK55_RS04925 0.13 -1.7
1,060,693 - LRK55_RS04925 0.13 -0.1
1,060,773 + LRK55_RS04925 0.20 -0.5
1,060,773 + LRK55_RS04925 0.20 -1.4
1,060,773 + LRK55_RS04925 0.20 +0.4
1,060,773 + LRK55_RS04925 0.20 -1.4
1,060,773 + LRK55_RS04925 0.20 +1.1
1,060,773 + LRK55_RS04925 0.20 +0.9
1,060,774 - LRK55_RS04925 0.20 -1.0
1,060,774 - LRK55_RS04925 0.20 -1.2
1,060,774 - LRK55_RS04925 0.20 -1.7
1,060,774 - LRK55_RS04925 0.20 +0.4
1,060,774 - LRK55_RS04925 0.20 -0.6
1,060,975 - LRK55_RS04925 0.38 -0.8
1,060,975 - LRK55_RS04925 0.38 -0.9
1,060,992 + LRK55_RS04925 0.39 -0.1
1,060,992 + LRK55_RS04925 0.39 -0.4
1,061,031 + LRK55_RS04925 0.43 -0.6
1,061,032 - LRK55_RS04925 0.43 +0.6
1,061,058 + LRK55_RS04925 0.45 +0.5
1,061,059 - LRK55_RS04925 0.45 -2.2
1,061,485 - LRK55_RS04925 0.82 -1.6
1,061,485 - LRK55_RS04925 0.82 -1.9

Or see this region's nucleotide sequence