Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02390

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02385 and LRK55_RS02390 are separated by 105 nucleotidesLRK55_RS02390 and LRK55_RS02395 are separated by 168 nucleotides LRK55_RS02385: LRK55_RS02385 - MFS transporter, at 514,274 to 515,506 _RS02385 LRK55_RS02390: LRK55_RS02390 - class I SAM-dependent methyltransferase, at 515,612 to 516,268 _RS02390 LRK55_RS02395: LRK55_RS02395 - DEAD/DEAH box helicase, at 516,437 to 517,765 _RS02395 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 514.687 kb on - strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.788 kb on + strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.789 kb on - strand, within LRK55_RS02385at 514.845 kb on + strand, within LRK55_RS02385at 514.845 kb on + strand, within LRK55_RS02385at 514.846 kb on - strand, within LRK55_RS02385at 514.846 kb on - strand, within LRK55_RS02385at 514.846 kb on - strand, within LRK55_RS02385at 514.846 kb on - strand, within LRK55_RS02385at 514.846 kb on - strand, within LRK55_RS02385at 514.846 kb on - strand, within LRK55_RS02385at 514.923 kb on - strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.953 kb on + strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 514.954 kb on - strand, within LRK55_RS02385at 515.343 kb on + strand, within LRK55_RS02385at 515.343 kb on + strand, within LRK55_RS02385at 515.343 kb on + strand, within LRK55_RS02385at 515.344 kb on - strand, within LRK55_RS02385at 515.558 kb on + strandat 515.558 kb on + strandat 515.558 kb on + strandat 515.558 kb on + strandat 515.558 kb on + strandat 515.559 kb on - strandat 515.559 kb on - strandat 515.578 kb on + strandat 515.578 kb on + strandat 515.578 kb on + strandat 515.579 kb on - strandat 515.579 kb on - strandat 515.579 kb on - strandat 515.648 kb on + strandat 515.648 kb on + strandat 515.648 kb on + strandat 515.649 kb on - strandat 515.649 kb on - strandat 515.649 kb on - strandat 515.649 kb on - strandat 515.672 kb on + strandat 515.672 kb on + strandat 515.672 kb on + strandat 515.672 kb on + strandat 515.673 kb on - strandat 515.673 kb on - strandat 515.705 kb on + strand, within LRK55_RS02390at 515.705 kb on + strand, within LRK55_RS02390at 515.706 kb on - strand, within LRK55_RS02390at 515.786 kb on + strand, within LRK55_RS02390at 515.786 kb on + strand, within LRK55_RS02390at 515.786 kb on + strand, within LRK55_RS02390at 515.787 kb on - strand, within LRK55_RS02390at 515.787 kb on - strand, within LRK55_RS02390at 515.787 kb on - strand, within LRK55_RS02390at 515.787 kb on - strand, within LRK55_RS02390at 515.787 kb on - strand, within LRK55_RS02390at 515.817 kb on - strand, within LRK55_RS02390at 515.817 kb on - strand, within LRK55_RS02390at 515.817 kb on - strand, within LRK55_RS02390at 515.961 kb on + strand, within LRK55_RS02390at 515.961 kb on + strand, within LRK55_RS02390at 515.961 kb on + strand, within LRK55_RS02390at 515.961 kb on + strand, within LRK55_RS02390at 515.961 kb on + strand, within LRK55_RS02390at 515.961 kb on + strand, within LRK55_RS02390at 515.961 kb on + strand, within LRK55_RS02390at 515.962 kb on - strand, within LRK55_RS02390at 515.962 kb on - strand, within LRK55_RS02390at 515.962 kb on - strand, within LRK55_RS02390at 515.962 kb on - strand, within LRK55_RS02390at 515.962 kb on - strand, within LRK55_RS02390at 515.969 kb on + strand, within LRK55_RS02390at 515.969 kb on + strand, within LRK55_RS02390at 515.969 kb on + strand, within LRK55_RS02390at 515.969 kb on + strand, within LRK55_RS02390at 515.969 kb on + strand, within LRK55_RS02390at 515.969 kb on + strand, within LRK55_RS02390at 515.969 kb on + strand, within LRK55_RS02390at 515.970 kb on - strand, within LRK55_RS02390at 515.970 kb on - strand, within LRK55_RS02390at 515.970 kb on - strand, within LRK55_RS02390at 516.239 kb on + strandat 516.239 kb on + strandat 516.239 kb on + strandat 516.239 kb on + strandat 516.239 kb on + strandat 516.239 kb on + strandat 516.239 kb on + strandat 516.239 kb on + strandat 516.240 kb on - strandat 516.240 kb on - strandat 516.240 kb on - strandat 516.240 kb on - strandat 516.240 kb on - strandat 516.240 kb on - strandat 516.240 kb on - strandat 516.332 kb on + strandat 516.332 kb on + strandat 516.333 kb on - strandat 516.333 kb on - strandat 516.333 kb on - strandat 516.334 kb on + strandat 516.334 kb on + strandat 516.334 kb on + strandat 516.334 kb on + strandat 516.334 kb on + strandat 516.335 kb on - strandat 516.335 kb on - strandat 516.335 kb on - strandat 516.335 kb on - strandat 516.390 kb on + strandat 516.390 kb on + strandat 516.391 kb on - strandat 516.391 kb on - strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.497 kb on + strandat 516.497 kb on + strandat 516.497 kb on + strandat 516.722 kb on + strand, within LRK55_RS02395at 516.722 kb on + strand, within LRK55_RS02395at 516.723 kb on - strand, within LRK55_RS02395

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x
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514,687 - LRK55_RS02385 0.33 +0.2
514,788 + LRK55_RS02385 0.42 -1.0
514,788 + LRK55_RS02385 0.42 +0.3
514,788 + LRK55_RS02385 0.42 -0.3
514,788 + LRK55_RS02385 0.42 +0.5
514,788 + LRK55_RS02385 0.42 +0.2
514,788 + LRK55_RS02385 0.42 -2.0
514,788 + LRK55_RS02385 0.42 -0.5
514,788 + LRK55_RS02385 0.42 -1.0
514,788 + LRK55_RS02385 0.42 +0.1
514,788 + LRK55_RS02385 0.42 -0.3
514,788 + LRK55_RS02385 0.42 -1.1
514,788 + LRK55_RS02385 0.42 +0.8
514,788 + LRK55_RS02385 0.42 +1.0
514,788 + LRK55_RS02385 0.42 -0.2
514,788 + LRK55_RS02385 0.42 -2.7
514,788 + LRK55_RS02385 0.42 -1.9
514,788 + LRK55_RS02385 0.42 +0.0
514,789 - LRK55_RS02385 0.42 -0.3
514,789 - LRK55_RS02385 0.42 -2.0
514,789 - LRK55_RS02385 0.42 +0.1
514,789 - LRK55_RS02385 0.42 +1.0
514,789 - LRK55_RS02385 0.42 -0.4
514,789 - LRK55_RS02385 0.42 -0.1
514,789 - LRK55_RS02385 0.42 +0.1
514,789 - LRK55_RS02385 0.42 -1.1
514,789 - LRK55_RS02385 0.42 +0.2
514,789 - LRK55_RS02385 0.42 +0.8
514,789 - LRK55_RS02385 0.42 +0.1
514,789 - LRK55_RS02385 0.42 -0.4
514,845 + LRK55_RS02385 0.46 +0.5
514,845 + LRK55_RS02385 0.46 -1.5
514,846 - LRK55_RS02385 0.46 +0.6
514,846 - LRK55_RS02385 0.46 +0.5
514,846 - LRK55_RS02385 0.46 +0.5
514,846 - LRK55_RS02385 0.46 -0.0
514,846 - LRK55_RS02385 0.46 -1.7
514,846 - LRK55_RS02385 0.46 +0.3
514,923 - LRK55_RS02385 0.53 -0.2
514,953 + LRK55_RS02385 0.55 +0.3
514,953 + LRK55_RS02385 0.55 +0.8
514,953 + LRK55_RS02385 0.55 -0.6
514,953 + LRK55_RS02385 0.55 -0.7
514,953 + LRK55_RS02385 0.55 +0.1
514,953 + LRK55_RS02385 0.55 -0.8
514,953 + LRK55_RS02385 0.55 +0.8
514,953 + LRK55_RS02385 0.55 +0.4
514,953 + LRK55_RS02385 0.55 +0.8
514,953 + LRK55_RS02385 0.55 -3.5
514,953 + LRK55_RS02385 0.55 -0.0
514,953 + LRK55_RS02385 0.55 -0.4
514,953 + LRK55_RS02385 0.55 -1.9
514,954 - LRK55_RS02385 0.55 -1.5
514,954 - LRK55_RS02385 0.55 -3.0
514,954 - LRK55_RS02385 0.55 +0.5
514,954 - LRK55_RS02385 0.55 -1.0
514,954 - LRK55_RS02385 0.55 +0.2
514,954 - LRK55_RS02385 0.55 -0.5
514,954 - LRK55_RS02385 0.55 -1.7
514,954 - LRK55_RS02385 0.55 -0.6
514,954 - LRK55_RS02385 0.55 -1.5
514,954 - LRK55_RS02385 0.55 +0.5
514,954 - LRK55_RS02385 0.55 +0.0
515,343 + LRK55_RS02385 0.87 +0.1
515,343 + LRK55_RS02385 0.87 +1.3
515,343 + LRK55_RS02385 0.87 +0.7
515,344 - LRK55_RS02385 0.87 +0.5
515,558 + +0.2
515,558 + -0.6
515,558 + -1.0
515,558 + -0.4
515,558 + +0.2
515,559 - -0.9
515,559 - -0.6
515,578 + +0.7
515,578 + -0.9
515,578 + +1.5
515,579 - +0.0
515,579 - +0.5
515,579 - +0.7
515,648 + +0.8
515,648 + +0.6
515,648 + -0.0
515,649 - -1.5
515,649 - +1.8
515,649 - -0.0
515,649 - -0.3
515,672 + -0.2
515,672 + -2.6
515,672 + -0.2
515,672 + +0.6
515,673 - -0.2
515,673 - +0.1
515,705 + LRK55_RS02390 0.14 -0.8
515,705 + LRK55_RS02390 0.14 -0.1
515,706 - LRK55_RS02390 0.14 -1.1
515,786 + LRK55_RS02390 0.26 -1.1
515,786 + LRK55_RS02390 0.26 -0.0
515,786 + LRK55_RS02390 0.26 +1.1
515,787 - LRK55_RS02390 0.27 +0.5
515,787 - LRK55_RS02390 0.27 +0.3
515,787 - LRK55_RS02390 0.27 +0.1
515,787 - LRK55_RS02390 0.27 +0.3
515,787 - LRK55_RS02390 0.27 +0.9
515,817 - LRK55_RS02390 0.31 +0.6
515,817 - LRK55_RS02390 0.31 +0.5
515,817 - LRK55_RS02390 0.31 +0.5
515,961 + LRK55_RS02390 0.53 +0.1
515,961 + LRK55_RS02390 0.53 +0.2
515,961 + LRK55_RS02390 0.53 +0.2
515,961 + LRK55_RS02390 0.53 -0.2
515,961 + LRK55_RS02390 0.53 -0.3
515,961 + LRK55_RS02390 0.53 +0.4
515,961 + LRK55_RS02390 0.53 -1.1
515,962 - LRK55_RS02390 0.53 -1.5
515,962 - LRK55_RS02390 0.53 -0.7
515,962 - LRK55_RS02390 0.53 -0.1
515,962 - LRK55_RS02390 0.53 +0.1
515,962 - LRK55_RS02390 0.53 +0.5
515,969 + LRK55_RS02390 0.54 -2.9
515,969 + LRK55_RS02390 0.54 -1.8
515,969 + LRK55_RS02390 0.54 -0.7
515,969 + LRK55_RS02390 0.54 -0.4
515,969 + LRK55_RS02390 0.54 +1.0
515,969 + LRK55_RS02390 0.54 -1.4
515,969 + LRK55_RS02390 0.54 -1.0
515,970 - LRK55_RS02390 0.54 +1.1
515,970 - LRK55_RS02390 0.54 -0.1
515,970 - LRK55_RS02390 0.54 -1.0
516,239 + +0.9
516,239 + +2.3
516,239 + +1.8
516,239 + -0.2
516,239 + +2.0
516,239 + +0.6
516,239 + -0.1
516,239 + +0.0
516,240 - -0.0
516,240 - +0.1
516,240 - +0.1
516,240 - +0.7
516,240 - +1.6
516,240 - -0.1
516,240 - +0.3
516,332 + -0.2
516,332 + +1.0
516,333 - -0.2
516,333 - -1.0
516,333 - +0.9
516,334 + -0.5
516,334 + -0.0
516,334 + +1.1
516,334 + +0.0
516,334 + -2.7
516,335 - +0.4
516,335 - -0.8
516,335 - +0.5
516,335 - +0.3
516,390 + -0.1
516,390 + +0.4
516,391 - -0.7
516,391 - -0.5
516,405 + -0.3
516,405 + -0.3
516,405 + -0.9
516,405 + -0.9
516,405 + +0.3
516,405 + +0.2
516,406 - -0.2
516,406 - +0.3
516,406 - -1.6
516,406 - +1.3
516,406 - -0.1
516,497 + -1.0
516,497 + -0.4
516,497 + -0.1
516,722 + LRK55_RS02395 0.21 +1.4
516,722 + LRK55_RS02395 0.21 +2.0
516,723 - LRK55_RS02395 0.22 -1.1

Or see this region's nucleotide sequence