Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS17165

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Metal_ion_mix_sitestressplate 2 x
3,725,815	+				+1.6
3,725,820	+				+0.5
3,725,820	+				-1.7
3,725,821	-				+0.9
3,725,927	+				+0.6
3,725,928	-				-0.5
3,725,928	-				+0.4
3,725,948	+				-0.9
3,726,308	+		LRK55_RS17160	0.57	+1.4
3,726,308	+		LRK55_RS17160	0.57	-0.0
3,726,309	-		LRK55_RS17160	0.57	-0.0
3,726,467	+		LRK55_RS17160	0.80	+0.7
3,726,467	+		LRK55_RS17160	0.80	+1.4
3,726,468	-		LRK55_RS17160	0.80	-1.1
3,726,468	-		LRK55_RS17160	0.80	-0.2
3,726,468	-		LRK55_RS17160	0.80	-1.2
3,726,468	-		LRK55_RS17160	0.80	-0.6
3,726,558	-				-0.3
3,726,625	+				-0.4
3,726,625	+				+0.3
3,726,626	-				-1.2
3,726,626	-				+1.0
3,726,626	-				+0.6
3,726,626	-				-0.7
3,726,626	-				+0.1
3,726,626	-				+0.2
3,726,662	+				+0.1
3,726,662	+				-0.7
3,726,662	+				-0.3
3,726,662	+				-0.6
3,726,662	+				-0.3
3,726,663	-				+2.1
3,726,673	+				-0.3
3,726,674	-				-0.1
3,726,757	+				-1.7
3,726,797	+		LRK55_RS17165	0.15	-0.8
3,726,797	+		LRK55_RS17165	0.15	-0.6
3,726,797	+		LRK55_RS17165	0.15	-0.2
3,726,797	+		LRK55_RS17165	0.15	-0.5
3,726,798	-		LRK55_RS17165	0.15	+0.4
3,726,798	-		LRK55_RS17165	0.15	-2.0
3,726,798	-		LRK55_RS17165	0.15	-0.8
3,726,798	-		LRK55_RS17165	0.15	-0.4
3,726,818	+		LRK55_RS17165	0.19	-1.1
3,726,818	+		LRK55_RS17165	0.19	-0.4
3,726,818	+		LRK55_RS17165	0.19	+0.1
3,726,818	+		LRK55_RS17165	0.19	+0.3
3,726,830	+		LRK55_RS17165	0.21	+0.6
3,726,830	+		LRK55_RS17165	0.21	+0.1
3,726,879	-		LRK55_RS17165	0.30	+1.0
3,726,920	-		LRK55_RS17165	0.37	+1.0
3,726,948	-		LRK55_RS17165	0.43	+0.4
3,726,948	-		LRK55_RS17165	0.43	+0.6
3,726,948	-		LRK55_RS17165	0.43	-1.0
3,727,016	+		LRK55_RS17165	0.55	+0.8
3,727,271	-				-0.8
3,727,352	+				+0.4
3,727,353	-				-0.6
3,727,353	-				+0.6
3,727,410	+				-1.6
3,727,410	+				-0.2
3,727,411	-				+0.4
3,727,411	-				+0.1
3,727,456	+				+0.1
3,727,456	+				+0.4
3,727,457	-				+0.2
3,727,507	+				+0.9
3,727,507	+				+0.1
3,727,507	+				-0.1
3,727,507	+				+0.4
3,727,508	-				-2.3
3,727,508	-				+0.1
3,727,520	+				-0.6
3,727,520	+				+0.5
3,727,520	+				-1.6
3,727,520	+				+0.1
3,727,521	-				+0.8
3,727,571	+				+0.2
3,727,597	+				+0.1
3,727,597	+				-0.2
3,727,597	+				-0.3
3,727,597	+				-2.1
3,727,598	-				+0.7
3,727,598	-				-1.4
3,727,651	+		LRK55_RS17170	0.14	+0.3
3,727,652	-		LRK55_RS17170	0.14	-0.8
3,727,652	-		LRK55_RS17170	0.14	+0.0
3,727,652	-		LRK55_RS17170	0.14	-1.2
3,727,652	-		LRK55_RS17170	0.14	-0.1
3,727,792	+		LRK55_RS17170	0.30	-3.8
3,727,793	-		LRK55_RS17170	0.30	-1.2
3,727,793	-		LRK55_RS17170	0.30	-0.6
3,727,793	-		LRK55_RS17170	0.30	+1.6
3,727,796	-		LRK55_RS17170	0.31	+1.7
3,727,938	+		LRK55_RS17170	0.46	+0.4
3,727,938	+		LRK55_RS17170	0.46	-1.2
3,728,034	+		LRK55_RS17170	0.57	+1.1
3,728,034	+		LRK55_RS17170	0.57	-1.8
3,728,034	+		LRK55_RS17170	0.57	+0.0
3,728,035	-		LRK55_RS17170	0.57	+0.1
3,728,068	-		LRK55_RS17170	0.61	-0.2
3,728,196	-		LRK55_RS17170	0.75	-1.1