Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS14385

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Metal_ion_mix_sitestressplate 2 x
3,172,381	-				-0.5
3,172,381	-				+0.5
3,172,381	-				+1.4
3,172,381	-				+0.1
3,172,381	-				+0.9
3,172,393	+				-0.1
3,172,394	-				-0.8
3,172,394	-				+0.4
3,172,444	+				+0.6
3,172,444	+				-0.5
3,172,470	-				-0.2
3,172,486	+				+0.5
3,172,486	+				-0.5
3,172,486	+				-0.2
3,172,486	+				+1.3
3,172,487	-				-1.1
3,172,487	-				+0.7
3,172,487	-				-0.5
3,172,487	-				+1.1
3,172,487	-				-0.3
3,172,487	-				+1.1
3,172,487	-				+0.1
3,172,512	-				+0.8
3,172,580	+				-0.2
3,172,580	+				-3.1
3,172,580	+				-0.5
3,172,581	-				+0.6
3,172,584	+				-0.2
3,172,584	+				-1.0
3,172,584	+				+0.0
3,172,585	-				-0.7
3,172,585	-				+0.0
3,172,585	-				+0.3
3,172,585	-				+1.1
3,172,589	+				+0.2
3,172,589	+				+0.1
3,172,589	+				+0.9
3,172,589	+				+0.6
3,172,590	-				-0.8
3,172,590	-				-3.6
3,172,590	-				+0.5
3,172,590	-				-0.4
3,172,590	-				+0.3
3,172,590	-				+1.0
3,172,590	-				-0.2
3,172,718	-		LRK55_RS14380	0.26	-1.5
3,172,718	-		LRK55_RS14380	0.26	+0.1
3,172,846	+		LRK55_RS14380	0.45	-0.2
3,172,846	+		LRK55_RS14380	0.45	+0.6
3,172,846	+		LRK55_RS14380	0.45	+0.3
3,172,846	+		LRK55_RS14380	0.45	-0.2
3,172,846	+		LRK55_RS14380	0.45	+0.6
3,172,846	+		LRK55_RS14380	0.45	-0.8
3,172,847	-		LRK55_RS14380	0.46	-1.0
3,172,847	-		LRK55_RS14380	0.46	-0.8
3,172,847	-		LRK55_RS14380	0.46	-0.4
3,172,847	-		LRK55_RS14380	0.46	-0.4
3,172,864	+		LRK55_RS14380	0.48	-1.5
3,172,864	+		LRK55_RS14380	0.48	-0.8
3,172,864	+		LRK55_RS14380	0.48	+0.9
3,172,865	-		LRK55_RS14380	0.48	+0.1
3,172,865	-		LRK55_RS14380	0.48	+1.4
3,173,302	+		LRK55_RS14385	0.14	-1.8
3,173,357	+		LRK55_RS14385	0.22	+0.7
3,173,358	-		LRK55_RS14385	0.22	-2.0
3,173,358	-		LRK55_RS14385	0.22	-2.2
3,173,392	+		LRK55_RS14385	0.27	-1.1
3,173,392	+		LRK55_RS14385	0.27	-0.2
3,174,236	+		LRK55_RS14390	0.76	-0.8
3,174,236	+		LRK55_RS14390	0.76	+1.1
3,174,236	+		LRK55_RS14390	0.76	-0.8
3,174,236	+		LRK55_RS14390	0.76	+0.9
3,174,236	+		LRK55_RS14390	0.76	-1.5
3,174,236	+		LRK55_RS14390	0.76	-0.5
3,174,236	+		LRK55_RS14390	0.76	-0.1
3,174,236	+		LRK55_RS14390	0.76	+0.1
3,174,237	-		LRK55_RS14390	0.76	+0.7
3,174,237	-		LRK55_RS14390	0.76	+0.2
3,174,237	-		LRK55_RS14390	0.76	-0.5
3,174,237	-		LRK55_RS14390	0.76	-0.0
3,174,237	-		LRK55_RS14390	0.76	+0.1
3,174,384	+				+1.2
3,174,384	+				+0.7
3,174,384	+				+1.9
3,174,384	+				+1.3
3,174,384	+				+1.7
3,174,385	-				+0.2
3,174,385	-				+0.0
3,174,385	-				+0.3
3,174,385	-				-0.8
3,174,385	-				-1.7
3,174,385	-				+0.5
3,174,385	-				-0.5
3,174,459	+				-0.2
3,174,459	+				-1.0
3,174,459	+				-0.9
3,174,459	+				-0.2
3,174,459	+				+0.4
3,174,459	+				+1.1
3,174,459	+				+0.6
3,174,459	+				-1.7
3,174,459	+				-0.1
3,174,459	+				-0.2
3,174,460	-				-0.2
3,174,460	-				-0.9
3,174,460	-				+0.0
3,174,460	-				-1.0
3,174,460	-				+0.6
3,174,460	-				+0.3
3,174,460	-				-0.4
3,174,460	-				+0.8
3,174,460	-				-0.6
3,174,460	-				-0.0
3,174,460	-				-1.0
3,174,460	-				+0.6
3,174,472	+				-3.0
3,174,472	+				+1.0
3,174,473	-				+0.0
3,174,473	-				-0.4
3,174,473	-				-0.7
3,174,473	-				-1.0
3,174,530	+				-1.0
3,174,530	+				+0.8
3,174,530	+				+1.3
3,174,530	+				-0.2
3,174,530	+				-0.6
3,174,530	+				-1.0
3,174,530	+				+0.1
3,174,530	+				+0.6
3,174,531	-				+1.3
3,174,531	-				-1.5
3,174,531	-				-0.0
3,174,531	-				+0.8
3,174,716	+		LRK55_RS14395	0.15	+0.3
3,174,716	+		LRK55_RS14395	0.15	+1.3
3,174,716	+		LRK55_RS14395	0.15	-0.3
3,174,716	+		LRK55_RS14395	0.15	+1.3
3,174,716	+		LRK55_RS14395	0.15	-1.8
3,174,717	-		LRK55_RS14395	0.15	-1.2
3,174,717	-		LRK55_RS14395	0.15	+1.6
3,174,717	-		LRK55_RS14395	0.15	-2.7
3,174,717	-		LRK55_RS14395	0.15	+1.1
3,174,717	-		LRK55_RS14395	0.15	-0.5
3,174,717	-		LRK55_RS14395	0.15	-0.2
3,174,717	-		LRK55_RS14395	0.15	-2.1
3,174,762	-		LRK55_RS14395	0.19	-0.3
3,174,809	+		LRK55_RS14395	0.23	+0.2
3,174,809	+		LRK55_RS14395	0.23	+0.7