Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS13935

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Metal_ion_mix_sitestressplate 2 x
3,089,326	-		LRK55_RS13925	0.68	-1.8
3,089,326	-		LRK55_RS13925	0.68	+0.3
3,090,641	-		LRK55_RS13935	0.13	+0.9
3,090,641	-		LRK55_RS13935	0.13	-1.3
3,090,641	-		LRK55_RS13935	0.13	+0.2
3,090,786	-		LRK55_RS13935	0.19	+0.3
3,090,944	+		LRK55_RS13935	0.25	+0.3
3,090,944	+		LRK55_RS13935	0.25	+0.3
3,090,944	+		LRK55_RS13935	0.25	-0.6
3,090,945	-		LRK55_RS13935	0.25	+0.5
3,090,945	-		LRK55_RS13935	0.25	+0.0
3,090,945	-		LRK55_RS13935	0.25	+0.3
3,091,668	-		LRK55_RS13935	0.54	+0.2
3,091,668	-		LRK55_RS13935	0.54	-0.8
3,092,123	+		LRK55_RS13935	0.72	+0.6
3,092,123	+		LRK55_RS13935	0.72	-0.3
3,092,123	+		LRK55_RS13935	0.72	+1.0
3,092,124	-		LRK55_RS13935	0.72	+0.3
3,092,482	+		LRK55_RS13935	0.86	+0.6
3,092,596	+				+1.7
3,092,596	+				-0.1
3,092,596	+				-2.1
3,092,597	-				+0.3
3,092,597	-				-0.4
3,092,597	-				-0.4
3,092,645	+				+0.0
3,092,645	+				-0.7
3,093,019	-		LRK55_RS13940	0.35	-1.9
3,093,096	+		LRK55_RS13940	0.52	-0.7
3,093,097	-		LRK55_RS13940	0.53	-0.2
3,093,129	+		LRK55_RS13940	0.60	-2.9
3,093,129	+		LRK55_RS13940	0.60	+0.7
3,093,129	+		LRK55_RS13940	0.60	-1.3
3,093,129	+		LRK55_RS13940	0.60	-0.8
3,093,129	+		LRK55_RS13940	0.60	-0.4
3,093,129	+		LRK55_RS13940	0.60	-2.6
3,093,129	+		LRK55_RS13940	0.60	-0.2
3,093,130	-		LRK55_RS13940	0.60	+1.3
3,093,165	+		LRK55_RS13940	0.68	+0.0
3,093,166	-		LRK55_RS13940	0.68	+0.2
3,093,204	+		LRK55_RS13940	0.77	-0.7
3,093,205	-		LRK55_RS13940	0.77	-0.1
3,093,341	+				+0.6
3,093,341	+				+1.5
3,093,341	+				+0.3
3,093,341	+				-0.2
3,093,342	-				-0.4
3,093,342	-				+0.4
3,093,344	-				-0.3
3,093,403	+				+1.5
3,093,404	-				-0.3
3,093,580	+		LRK55_RS13945	0.33	-0.1
3,093,581	-		LRK55_RS13945	0.33	-1.2
3,093,667	+		LRK55_RS13945	0.44	-0.3
3,093,744	+		LRK55_RS13945	0.54	-1.4
3,093,769	-		LRK55_RS13945	0.58	-0.8