Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS11315

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Metal_ion_mix_sitestressplate 2 x
2,498,055	-		LRK55_RS11305	0.81	-0.2
2,498,069	+		LRK55_RS11305	0.83	-2.0
2,498,069	+		LRK55_RS11305	0.83	-0.3
2,498,069	+		LRK55_RS11305	0.83	+0.4
2,498,070	-		LRK55_RS11305	0.83	+0.8
2,498,186	+				+0.2
2,498,186	+				+0.7
2,498,186	+				-0.4
2,498,186	+				+1.0
2,498,187	-				+1.0
2,498,187	-				-1.6
2,498,187	-				+1.9
2,498,187	-				+0.6
2,498,187	-				+0.3
2,498,193	+				+0.1
2,498,194	-				-0.6
2,498,194	-				+0.5
2,498,613	+		LRK55_RS11310	0.57	+0.6
2,498,613	+		LRK55_RS11310	0.57	-0.1
2,498,614	-		LRK55_RS11310	0.57	-0.5
2,498,614	-		LRK55_RS11310	0.57	-1.1
2,498,614	-		LRK55_RS11310	0.57	-0.4
2,498,856	+		LRK55_RS11310	0.89	+0.4
2,498,856	+		LRK55_RS11310	0.89	+0.4
2,498,928	+				+0.7
2,498,928	+				-0.9
2,498,929	-				-0.1
2,498,985	-				+0.4
2,498,985	-				-1.0
2,499,378	+		LRK55_RS11315	0.50	+1.1
2,499,378	+		LRK55_RS11315	0.50	+1.1
2,499,378	+		LRK55_RS11315	0.50	-0.2
2,499,378	+		LRK55_RS11315	0.50	+0.3
2,499,379	-		LRK55_RS11315	0.50	+1.5
2,499,379	-		LRK55_RS11315	0.50	+1.5
2,499,379	-		LRK55_RS11315	0.50	+1.0
2,499,484	+		LRK55_RS11315	0.65	+0.5
2,499,484	+		LRK55_RS11315	0.65	+3.3
2,499,485	-		LRK55_RS11315	0.65	+0.7
2,499,486	+		LRK55_RS11315	0.65	+0.6
2,499,486	+		LRK55_RS11315	0.65	+1.1
2,499,486	+		LRK55_RS11315	0.65	-0.1
2,499,486	+		LRK55_RS11315	0.65	+0.4
2,499,486	+		LRK55_RS11315	0.65	+0.9
2,499,486	+		LRK55_RS11315	0.65	+0.9
2,499,486	+		LRK55_RS11315	0.65	+1.0
2,499,486	+		LRK55_RS11315	0.65	-0.7
2,499,486	+		LRK55_RS11315	0.65	+1.0
2,499,487	-		LRK55_RS11315	0.65	+1.3
2,499,487	-		LRK55_RS11315	0.65	-0.5
2,499,487	-		LRK55_RS11315	0.65	+1.8
2,499,487	-		LRK55_RS11315	0.65	-0.1
2,499,487	-		LRK55_RS11315	0.65	+1.5
2,499,487	-		LRK55_RS11315	0.65	+0.6
2,499,487	-		LRK55_RS11315	0.65	+1.3
2,499,552	+		LRK55_RS11315	0.75	+0.8
2,499,552	+		LRK55_RS11315	0.75	-0.3
2,499,552	+		LRK55_RS11315	0.75	+1.2
2,499,552	+		LRK55_RS11315	0.75	+0.7
2,499,552	+		LRK55_RS11315	0.75	-1.2
2,499,552	+		LRK55_RS11315	0.75	+2.2
2,499,552	+		LRK55_RS11315	0.75	+1.2
2,499,552	+		LRK55_RS11315	0.75	-0.0
2,499,552	+		LRK55_RS11315	0.75	+0.8
2,499,553	-		LRK55_RS11315	0.75	+1.1
2,499,553	-		LRK55_RS11315	0.75	-1.1
2,499,553	-		LRK55_RS11315	0.75	+0.4
2,499,553	-		LRK55_RS11315	0.75	-0.1
2,499,553	-		LRK55_RS11315	0.75	+1.3
2,499,555	+		LRK55_RS11315	0.75	+0.4
2,499,555	+		LRK55_RS11315	0.75	+1.1
2,499,555	+		LRK55_RS11315	0.75	+0.2
2,499,555	+		LRK55_RS11315	0.75	+0.1
2,499,555	+		LRK55_RS11315	0.75	-0.5
2,499,555	+		LRK55_RS11315	0.75	-0.6
2,499,555	+		LRK55_RS11315	0.75	+0.7
2,499,555	+		LRK55_RS11315	0.75	-1.1
2,499,555	+		LRK55_RS11315	0.75	+0.3
2,499,555	+		LRK55_RS11315	0.75	+0.4
2,499,555	+		LRK55_RS11315	0.75	+1.8
2,499,555	+		LRK55_RS11315	0.75	+1.2
2,499,555	+		LRK55_RS11315	0.75	+0.4
2,499,555	+		LRK55_RS11315	0.75	+0.3
2,499,555	+		LRK55_RS11315	0.75	+1.9
2,499,555	+		LRK55_RS11315	0.75	-1.2
2,499,556	-		LRK55_RS11315	0.75	+0.6
2,499,556	-		LRK55_RS11315	0.75	+0.2
2,499,556	-		LRK55_RS11315	0.75	+0.3
2,499,556	-		LRK55_RS11315	0.75	+0.4
2,499,709	-				-0.0
2,499,709	-				-0.1
2,499,709	-				+0.4
2,499,814	+				+0.6
2,499,815	-				+0.2
2,499,931	+				-0.5
2,499,931	+				+0.8
2,499,931	+				-2.4
2,499,931	+				-0.2
2,499,931	+				+0.3
2,499,931	+				-0.3