Experiment: R2A with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS08830 and LRK55_RS08835 are separated by 11 nucleotides LRK55_RS08835 and LRK55_RS08840 are separated by 45 nucleotides LRK55_RS08840 and LRK55_RS08845 overlap by 14 nucleotides LRK55_RS08845 and LRK55_RS08850 are separated by 106 nucleotides LRK55_RS08850 and LRK55_RS08855 are separated by 128 nucleotides LRK55_RS08855 and LRK55_RS08860 are separated by 65 nucleotides
LRK55_RS08830: LRK55_RS08830 - NAD(+) diphosphatase, at 1,939,973 to 1,940,947
_RS08830
LRK55_RS08835: LRK55_RS08835 - iron-sulfur cluster insertion protein ErpA, at 1,940,959 to 1,941,327
_RS08835
LRK55_RS08840: LRK55_RS08840 - polymer-forming cytoskeletal protein, at 1,941,373 to 1,941,804
_RS08840
LRK55_RS08845: LRK55_RS08845 - hypothetical protein, at 1,941,791 to 1,942,546
_RS08845
LRK55_RS08850: LRK55_RS08850 - bacterioferritin, at 1,942,653 to 1,943,123
_RS08850
LRK55_RS08855: LRK55_RS08855 - (2Fe-2S)-binding protein, at 1,943,252 to 1,943,449
_RS08855
LRK55_RS08860: LRK55_RS08860 - RNA pyrophosphohydrolase, at 1,943,515 to 1,944,075
_RS08860
Position (kb) 1941
1942
1943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1941.335 kb on + strand at 1941.335 kb on + strand at 1941.335 kb on + strand at 1941.335 kb on + strand at 1941.335 kb on + strand at 1941.335 kb on + strand at 1941.335 kb on + strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.336 kb on - strand at 1941.366 kb on + strand at 1941.366 kb on + strand at 1941.367 kb on - strand at 1941.495 kb on - strand, within LRK55_RS08840 at 1941.793 kb on - strand at 1941.793 kb on - strand at 1941.963 kb on + strand, within LRK55_RS08845 at 1941.963 kb on + strand, within LRK55_RS08845 at 1941.963 kb on + strand, within LRK55_RS08845 at 1941.963 kb on + strand, within LRK55_RS08845 at 1941.964 kb on - strand, within LRK55_RS08845 at 1941.964 kb on - strand, within LRK55_RS08845 at 1941.964 kb on - strand, within LRK55_RS08845 at 1941.964 kb on - strand, within LRK55_RS08845 at 1942.215 kb on + strand, within LRK55_RS08845 at 1942.215 kb on + strand, within LRK55_RS08845 at 1942.215 kb on + strand, within LRK55_RS08845 at 1942.215 kb on + strand, within LRK55_RS08845 at 1942.216 kb on - strand, within LRK55_RS08845 at 1942.216 kb on - strand, within LRK55_RS08845 at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.574 kb on + strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.575 kb on - strand at 1942.576 kb on + strand at 1942.576 kb on + strand at 1942.577 kb on - strand at 1942.577 kb on - strand at 1942.577 kb on - strand at 1942.577 kb on - strand at 1942.577 kb on - strand at 1942.577 kb on - strand at 1942.577 kb on - strand at 1942.678 kb on + strand at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.783 kb on + strand, within LRK55_RS08850 at 1942.784 kb on - strand, within LRK55_RS08850 at 1942.784 kb on - strand, within LRK55_RS08850 at 1942.784 kb on - strand, within LRK55_RS08850 at 1942.830 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.990 kb on + strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1942.991 kb on - strand, within LRK55_RS08850 at 1943.050 kb on + strand, within LRK55_RS08850 at 1943.050 kb on + strand, within LRK55_RS08850 at 1943.050 kb on + strand, within LRK55_RS08850 at 1943.050 kb on + strand, within LRK55_RS08850 at 1943.050 kb on + strand, within LRK55_RS08850 at 1943.051 kb on - strand, within LRK55_RS08850 at 1943.051 kb on - strand, within LRK55_RS08850 at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.077 kb on + strand at 1943.078 kb on - strand at 1943.078 kb on - strand at 1943.078 kb on - strand at 1943.078 kb on - strand at 1943.078 kb on - strand at 1943.078 kb on - strand at 1943.078 kb on - strand at 1943.078 kb on - strand at 1943.155 kb on + strand at 1943.156 kb on - strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.157 kb on + strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.158 kb on - strand at 1943.207 kb on + strand at 1943.207 kb on + strand at 1943.207 kb on + strand at 1943.207 kb on + strand at 1943.208 kb on - strand at 1943.208 kb on - strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.445 kb on + strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.446 kb on - strand at 1943.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x remove 1,941,335 + +0.2 1,941,335 + -0.8 1,941,335 + -1.4 1,941,335 + -1.2 1,941,335 + +0.6 1,941,335 + -1.8 1,941,335 + -1.2 1,941,336 - +1.4 1,941,336 - -0.3 1,941,336 - +1.9 1,941,336 - -2.5 1,941,336 - -1.9 1,941,336 - -0.3 1,941,336 - +0.0 1,941,336 - -0.6 1,941,336 - -0.8 1,941,336 - +0.2 1,941,336 - +0.2 1,941,336 - +0.6 1,941,336 - -0.3 1,941,336 - +1.4 1,941,336 - +0.2 1,941,336 - +0.3 1,941,366 + -0.5 1,941,366 + -0.5 1,941,367 - +0.2 1,941,495 - LRK55_RS08840 0.28 +1.2 1,941,793 - +1.6 1,941,793 - -1.1 1,941,963 + LRK55_RS08845 0.23 +0.1 1,941,963 + LRK55_RS08845 0.23 +1.3 1,941,963 + LRK55_RS08845 0.23 +0.2 1,941,963 + LRK55_RS08845 0.23 +1.3 1,941,964 - LRK55_RS08845 0.23 +0.5 1,941,964 - LRK55_RS08845 0.23 -0.2 1,941,964 - LRK55_RS08845 0.23 -0.9 1,941,964 - LRK55_RS08845 0.23 +1.0 1,942,215 + LRK55_RS08845 0.56 +0.4 1,942,215 + LRK55_RS08845 0.56 +1.6 1,942,215 + LRK55_RS08845 0.56 +0.3 1,942,215 + LRK55_RS08845 0.56 +0.5 1,942,216 - LRK55_RS08845 0.56 -0.1 1,942,216 - LRK55_RS08845 0.56 +0.3 1,942,574 + +1.0 1,942,574 + +0.2 1,942,574 + +0.2 1,942,574 + -0.6 1,942,574 + -0.0 1,942,574 + +0.0 1,942,574 + +0.9 1,942,574 + +0.8 1,942,574 + +0.3 1,942,574 + +0.6 1,942,574 + -0.6 1,942,574 + +0.7 1,942,574 + -1.1 1,942,574 + +1.6 1,942,574 + +1.0 1,942,574 + +1.8 1,942,574 + -0.1 1,942,574 + -1.7 1,942,574 + +0.3 1,942,574 + +0.1 1,942,574 + +0.8 1,942,575 - +0.7 1,942,575 - +0.4 1,942,575 - +0.6 1,942,575 - +0.0 1,942,575 - +1.2 1,942,575 - +0.5 1,942,575 - -1.1 1,942,575 - +0.3 1,942,575 - -0.9 1,942,575 - -0.3 1,942,575 - +0.5 1,942,575 - +0.2 1,942,575 - -0.8 1,942,575 - +0.5 1,942,575 - +0.4 1,942,575 - -0.2 1,942,575 - -0.9 1,942,575 - +0.1 1,942,575 - +0.1 1,942,575 - +0.9 1,942,575 - +0.7 1,942,575 - -0.8 1,942,575 - -2.8 1,942,576 + -0.4 1,942,576 + +0.0 1,942,577 - -0.3 1,942,577 - -0.1 1,942,577 - -2.2 1,942,577 - -0.3 1,942,577 - -0.9 1,942,577 - +0.3 1,942,577 - +1.0 1,942,678 + +0.2 1,942,783 + LRK55_RS08850 0.28 +0.6 1,942,783 + LRK55_RS08850 0.28 -0.1 1,942,783 + LRK55_RS08850 0.28 +0.5 1,942,783 + LRK55_RS08850 0.28 +1.0 1,942,783 + LRK55_RS08850 0.28 +0.3 1,942,783 + LRK55_RS08850 0.28 -0.7 1,942,783 + LRK55_RS08850 0.28 +0.4 1,942,783 + LRK55_RS08850 0.28 -1.2 1,942,783 + LRK55_RS08850 0.28 -0.3 1,942,783 + LRK55_RS08850 0.28 -0.7 1,942,784 - LRK55_RS08850 0.28 +0.3 1,942,784 - LRK55_RS08850 0.28 -1.0 1,942,784 - LRK55_RS08850 0.28 -0.6 1,942,830 + LRK55_RS08850 0.38 -0.7 1,942,990 + LRK55_RS08850 0.72 +0.2 1,942,990 + LRK55_RS08850 0.72 -0.1 1,942,990 + LRK55_RS08850 0.72 +0.2 1,942,990 + LRK55_RS08850 0.72 -0.8 1,942,990 + LRK55_RS08850 0.72 -0.3 1,942,990 + LRK55_RS08850 0.72 +0.1 1,942,990 + LRK55_RS08850 0.72 +0.3 1,942,990 + LRK55_RS08850 0.72 +0.4 1,942,990 + LRK55_RS08850 0.72 +0.5 1,942,990 + LRK55_RS08850 0.72 +0.1 1,942,990 + LRK55_RS08850 0.72 -1.4 1,942,991 - LRK55_RS08850 0.72 +0.3 1,942,991 - LRK55_RS08850 0.72 -1.0 1,942,991 - LRK55_RS08850 0.72 -1.0 1,942,991 - LRK55_RS08850 0.72 -0.7 1,942,991 - LRK55_RS08850 0.72 -1.2 1,942,991 - LRK55_RS08850 0.72 -1.8 1,942,991 - LRK55_RS08850 0.72 -0.2 1,942,991 - LRK55_RS08850 0.72 -0.7 1,942,991 - LRK55_RS08850 0.72 -0.3 1,942,991 - LRK55_RS08850 0.72 -0.7 1,942,991 - LRK55_RS08850 0.72 +0.4 1,942,991 - LRK55_RS08850 0.72 -0.5 1,942,991 - LRK55_RS08850 0.72 +0.9 1,943,050 + LRK55_RS08850 0.84 -0.2 1,943,050 + LRK55_RS08850 0.84 -1.3 1,943,050 + LRK55_RS08850 0.84 -0.8 1,943,050 + LRK55_RS08850 0.84 -0.2 1,943,050 + LRK55_RS08850 0.84 -0.6 1,943,051 - LRK55_RS08850 0.85 -2.3 1,943,051 - LRK55_RS08850 0.85 +0.5 1,943,077 + -1.2 1,943,077 + -0.5 1,943,077 + +0.1 1,943,077 + -0.2 1,943,077 + -2.3 1,943,077 + -1.2 1,943,077 + -0.8 1,943,077 + +1.6 1,943,077 + -0.1 1,943,077 + -0.7 1,943,077 + +1.3 1,943,077 + -0.3 1,943,077 + +1.5 1,943,077 + +0.4 1,943,078 - +0.8 1,943,078 - +1.6 1,943,078 - +0.0 1,943,078 - +0.8 1,943,078 - -0.4 1,943,078 - -0.1 1,943,078 - -2.2 1,943,078 - -0.1 1,943,155 + +0.5 1,943,156 - -1.2 1,943,157 + -0.6 1,943,157 + -0.7 1,943,157 + +0.4 1,943,157 + +0.6 1,943,157 + +1.3 1,943,157 + +0.7 1,943,157 + -1.0 1,943,157 + +0.3 1,943,157 + +0.3 1,943,157 + +0.4 1,943,158 - +0.4 1,943,158 - -1.4 1,943,158 - -0.2 1,943,158 - -1.4 1,943,158 - +1.1 1,943,158 - +2.2 1,943,158 - +1.2 1,943,158 - +0.8 1,943,158 - +1.6 1,943,158 - +1.0 1,943,158 - +0.5 1,943,207 + +0.2 1,943,207 + -0.0 1,943,207 + +0.9 1,943,207 + -0.0 1,943,208 - -0.7 1,943,208 - -1.4 1,943,445 + -0.3 1,943,445 + -1.4 1,943,445 + -0.0 1,943,445 + -0.8 1,943,445 + +0.3 1,943,445 + -0.9 1,943,445 + -1.9 1,943,445 + -0.5 1,943,445 + +0.9 1,943,445 + +1.8 1,943,445 + +2.0 1,943,445 + -0.5 1,943,445 + +0.4 1,943,445 + +0.1 1,943,445 + +0.6 1,943,445 + -0.0 1,943,445 + +0.7 1,943,445 + -1.1 1,943,445 + -0.2 1,943,445 + -2.1 1,943,445 + -0.7 1,943,445 + -1.2 1,943,446 - +0.8 1,943,446 - +2.0 1,943,446 - +0.5 1,943,446 - +0.1 1,943,446 - +0.1 1,943,446 - +0.1 1,943,446 - -0.4 1,943,446 - -0.8 1,943,446 - +0.4 1,943,446 - -0.7 1,943,446 - -0.2 1,943,446 - +0.2 1,943,446 - -0.1 1,943,446 - -0.3 1,943,446 - +1.4 1,943,446 - +0.8 1,943,446 - -0.3 1,943,446 - -1.7 1,943,446 - -1.0 1,943,446 - +0.4 1,943,446 - -1.1 1,943,446 - -1.2 1,943,446 - +0.2 1,943,446 - -1.8 1,943,446 - -0.1 1,943,446 - -0.6 1,943,446 - -1.6 1,943,446 - -0.9 1,943,446 - +0.4 1,943,446 - -0.5 1,943,477 + -1.2
Or see this region's nucleotide sequence